Gene sequences

How To ▶︎

JA

EN

TOP > About the Species(Solanum lycopersicum ) > genome data >Gene sequences

Search

By Traits

Let’s Analyze!!

SNP Detection
(lang=JA only)

Other Tools

Data List

All

Trait-Related Loci

Solanum lycopersicum

CDS Sequence

CDS ID	Solyc12g098710.2.1
CDS Infomation	15-cis-zeta-carotene isomerase (AHRD V3.3 *** A0A0A7DVN8_LYCBA)
Sequence	ATGGCAACTTCAATTTTTCTCTCACACCCTTTTTCTCATTTATTATCAAAACACCATAAA ATTCCAAGTCCTAAACAAACCATAGCCATAGCATATCACTCCACCAACAAACCCACCACC AAGACTCCATTTTTACCATTACCCACTTCCTTTTTTCCATTTCCCTCAAACCCCAGAAAG GAATTTTGGCCAATTTCAGTGGGAAGAACACAAACAGATGAAAAAGATGAAATCTTGGTG GTGGGTGAAGATTCTGCTGAATTTGAGTTATCCAAACAAAAGATTTCATCTTGGGTTTAT TTTGCTGGGGTTCTTGGTGTTGTGCTTTATGTTCTTAATGTTGTTTGGATTGACAATTCT ACTGGATTTGGAAAATCATTCATTGATTCTGTTTCTAGTATTTCAGATAGCCCTGAAATT GTAATGCTTTCCCTTACCTTGATTTTCGCTATAGTCCACAGTGGTCTTGCTAGTCTTAGA GACAAAGGTGAGGAACTCATTGGAGAGCGTGCTTTTCGTGTATTGTTTGCTGGGGTATCT CTGCCATTGGCAGTCAGCACAATTGTGTATTTCATTAACCACCGATACGATGGAGTGCAG TTATGGCAATTAAACAGTGTTGCTGGGATTCACGAACTAGTTTGGATTTCTAACTTTGTT TCCTTCTTCTTCCTATACCCGTCGACATTCAATTTACTAGAGGTAGCGGCTGTTGACAAG CCCAAGATGCATCTTTGGGAAACTGGGATTATGAGGATTACCAGGCATCCACAGCTGGTC GGGCAGGTTATATGGTGCTTAGCTCACACGCTGTGGATTGGGAATTCAGTTGCAGTGGCA GCTTCAGTAGGTTTGATAGGACATCATCTGTTTGGTGCCTGGAATGGGGACCGGAGGTTA GCCATACGATATGGTGAGGCTTTTGAAGTCGTGAAGAACAGAACGAGTATCATTCCATTT GCAGCCATTCTTGATGGTCGTCAAAAGTTGCCTGAAGATTATTACAAGGAATTTATCAGA TTGCCATATTTATCGATAACAACATTGACATTAGGTGCTTACTTCCTCCACCCCATTATG CAAGCTGCCAGTTATCGGCTACACTGGTAG

Peptide Sequence

PEP ID	Solyc12g098710.2.1
PEP Infomation	15-cis-zeta-carotene isomerase (AHRD V3.3 *** A0A0A7DVN8_LYCBA)
Sequence	MATSIFLSHPFSHLLSKHHKIPSPKQTIAIAYHSTNKPTTKTPFLPLPTSFFPFPSNPRK EFWPISVGRTQTDEKDEILVVGEDSAEFELSKQKISSWVYFAGVLGVVLYVLNVVWIDNS TGFGKSFIDSVSSISDSPEIVMLSLTLIFAIVHSGLASLRDKGEELIGERAFRVLFAGVS LPLAVSTIVYFINHRYDGVQLWQLNSVAGIHELVWISNFVSFFFLYPSTFNLLEVAAVDK PKMHLWETGIMRITRHPQLVGQVIWCLAHTLWIGNSVAVAASVGLIGHHLFGAWNGDRRL AIRYGEAFEVVKNRTSIIPFAAILDGRQKLPEDYYKEFIRLPYLSITTLTLGAYFLHPIM QAASYRLHW*

Transcript Sequence

Transcript ID	Solyc12g098710.2.1
Transcript Infomation	15-cis-zeta-carotene isomerase (AHRD V3.3 *** A0A0A7DVN8_LYCBA)
Sequence	AAAAAAAAAAATTAAATGTTTTTGAATAATAACATAAAAAATTATTTTTTTGAAAAGATG AAAAAAATAATTTCCTTTTAAAAATACTTGCAACAAATAAGATTTCTCAAAATAATTTTT TTTATGTCGTAATCCTCTTTTCTAGTTACTCTACCCCCAATTTTTATTTATTTGTTGAAA AAAACTAAGAACTTGGCCAAGACAGGTTTATATATTTACCAAAACTACACACTTAGAGCT CACATAATCTTGTAAAAATGGCAACTTCAATTTTTCTCTCACACCCTTTTTCTCATTTAT TATCAAAACACCATAAAATTCCAAGTCCTAAACAAACCATAGCCATAGCATATCACTCCA CCAACAAACCCACCACCAAGACTCCATTTTTACCATTACCCACTTCCTTTTTTCCATTTC CCTCAAACCCCAGAAAGGAATTTTGGCCAATTTCAGTGGGAAGAACACAAACAGATGAAA AAGATGAAATCTTGGTGGTGGGTGAAGATTCTGCTGAATTTGAGTTATCCAAACAAAAGA TTTCATCTTGGGTTTATTTTGCTGGGGTTCTTGGTGTTGTGCTTTATGTTCTTAATGTTG TTTGGATTGACAATTCTACTGGATTTGGAAAATCATTCATTGATTCTGTTTCTAGTATTT CAGATAGCCCTGAAATTGTAATGCTTTCCCTTACCTTGATTTTCGCTATAGTCCACAGTG GTCTTGCTAGTCTTAGAGACAAAGGTGAGGAACTCATTGGAGAGCGTGCTTTTCGTGTAT TGTTTGCTGGGGTATCTCTGCCATTGGCAGTCAGCACAATTGTGTATTTCATTAACCACC GATACGATGGAGTGCAGTTATGGCAATTAAACAGTGTTGCTGGGATTCACGAACTAGTTT GGATTTCTAACTTTGTTTCCTTCTTCTTCCTATACCCGTCGACATTCAATTTACTAGAGG TAGCGGCTGTTGACAAGCCCAAGATGCATCTTTGGGAAACTGGGATTATGAGGATTACCA GGCATCCACAGCTGGTCGGGCAGGTTATATGGTGCTTAGCTCACACGCTGTGGATTGGGA ATTCAGTTGCAGTGGCAGCTTCAGTAGGTTTGATAGGACATCATCTGTTTGGTGCCTGGA ATGGGGACCGGAGGTTAGCCATACGATATGGTGAGGCTTTTGAAGTCGTGAAGAACAGAA CGAGTATCATTCCATTTGCAGCCATTCTTGATGGTCGTCAAAAGTTGCCTGAAGATTATT ACAAGGAATTTATCAGATTGCCATATTTATCGATAACAACATTGACATTAGGTGCTTACT TCCTCCACCCCATTATGCAAGCTGCCAGTTATCGGCTACACTGGTAGTAGTACTGATGTT ACATAACTCGTTTCCATACAAGATATCGCGATTACGAGTTGTATATTTTTCCTCAATATA TATAGGTTACTGATGTCTATTTAACTACTGTTGGATAACAAAGAAAGAAAGAAGAGGAAT AGAGAGAATTCAGTTTAATGTGTTTGAAAGTAAAGTTCCAACTTGTATTTCCCTTCAATT TCTATATAGTGTATATCATGACATATATGTCCTTGTTATTCCAATATATATATATATGGT ACCAAAGTTTTCGAGTTTGAGTTATGTTAATGAATTATTATTTTTTATAAAACGCGATTT