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SNP Detection
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Data List

All Markers Trait-Related Loci
Solanum lycopersicum

CDS Sequence

CDS ID

Solyc12g096880.2.1
CDS Infomation

Disease resistance protein (TIR-NBS-LRR class) family (AHRD V3.3 *-* AT3G44670.2)
Sequence

ATGTCACACACTTCTTCTTCCAAAATTCAAAAGTACGATGTTTTTCTGAGTTTTAGTGGT
GCAGATGTACGTAAAACATTTGTGAGTCATCTCCATAACGCGTTAATACAAGTAGGAATT
AACGTTTTCATAGATGAACGTATAGAAACCGGAACATCAATTCCTCACGAACTACCAAAA
GCCATAAAAGAGTCTAAATTTGCTATTGTGATATTTTCTAAAAGCTATGCATGGTCAAAA
TGGTGTTTAAACGAGCTTGCAGAGATCATTAAGTGTCGAAAGGAATTGGACCAAATTGTA
ATTCCTATTTTCTATAACGTAGATCCATCAGATGTAAGCCATCAAACTCAATCTTTTGCT
GAGGCTTTTTCCAAACACGAGGAAAAATATGAAGACGAAAAGATTCAAAGATGGAGGGGT
GCATTAGCGAAGTCTGGGAAAATAAAAGGGCACCATTTGCAAAATTACAAGACTGAGGCA
GATTGCATTAAAGAGGTTGTTGACAGACTATTGCCAGTATTGCAAATTGACGATGATGAT
GATGATGATGATGTTCGTGCCTACATACGGGGCAAGGACAGTAAATCTCCGATTCTTATC
GATGGAGGCAAAATGGACCATGTCTATGTTTATCGTGTTACGTGTATGAGTGAAACTATG
AAAGTCAAGTGGACAGGGCCAGTCCAGACCGATCCAACCCAACCGGATAAGGAAGGGCCA
ATAACTATCCGGCCCCATTCATTAGGGTTGTTGGGTGGTCATGGTCTTGGCCATTCATTA
GGATTGTTGAGTGGTCTCTATAGGACCTTTTTCGATTTGATTTCTAATTTATGA

Peptide Sequence

PEP ID

Solyc12g096880.2.1
PEP Infomation

Disease resistance protein (TIR-NBS-LRR class) family (AHRD V3.3 *-* AT3G44670.2)
Sequence

MSHTSSSKIQKYDVFLSFSGADVRKTFVSHLHNALIQVGINVFIDERIETGTSIPHELPK
AIKESKFAIVIFSKSYAWSKWCLNELAEIIKCRKELDQIVIPIFYNVDPSDVSHQTQSFA
EAFSKHEEKYEDEKIQRWRGALAKSGKIKGHHLQNYKTEADCIKEVVDRLLPVLQIDDDD
DDDDVRAYIRGKDSKSPILIDGGKMDHVYVYRVTCMSETMKVKWTGPVQTDPTQPDKEGP
ITIRPHSLGLLGGHGLGHSLGLLSGLYRTFFDLISNL*

Transcript Sequence

Transcript ID

Solyc12g096880.2.1
Transcript Infomation

Disease resistance protein (TIR-NBS-LRR class) family (AHRD V3.3 *-* AT3G44670.2)
Sequence

AGACCTTTTATACATTCCGTACAAAATATTACATATATTTTCTTATATATTATACGCGGA
TTTCGAAATTACAAATCAAATATTATCCTATCAACCTAAGACCTAATACACGCATACCTA
TACTTTGATTTTTTTTTCACCTTTTTGGCCAAGGCTAAGTCAAAAGTCTTCTTAAATTAT
ATAAAAAAGAAGAAGTAGGGTACATATATTTTTTATGACTTCAATTAGGAACATGATAAG
AAGTTACCATAAAGACTATGAATAAAAAGTGAAAAAAAGGTGAAGTATTGTTCTTCATTA
AGTTGAGAATTTCCCTATTAGTTTTTAGCAATTGCGACTAATATTCTTTAACAATGTCAC
ACACTTCTTCTTCCAAAATTCAAAAGTACGATGTTTTTCTGAGTTTTAGTGGTGCAGATG
TACGTAAAACATTTGTGAGTCATCTCCATAACGCGTTAATACAAGTAGGAATTAACGTTT
TCATAGATGAACGTATAGAAACCGGAACATCAATTCCTCACGAACTACCAAAAGCCATAA
AAGAGTCTAAATTTGCTATTGTGATATTTTCTAAAAGCTATGCATGGTCAAAATGGTGTT
TAAACGAGCTTGCAGAGATCATTAAGTGTCGAAAGGAATTGGACCAAATTGTAATTCCTA
TTTTCTATAACGTAGATCCATCAGATGTAAGCCATCAAACTCAATCTTTTGCTGAGGCTT
TTTCCAAACACGAGGAAAAATATGAAGACGAAAAGATTCAAAGATGGAGGGGTGCATTAG
CGAAGTCTGGGAAAATAAAAGGGCACCATTTGCAAAATTACAAGACTGAGGCAGATTGCA
TTAAAGAGGTTGTTGACAGACTATTGCCAGTATTGCAAATTGACGATGATGATGATGATG
ATGATGTTCGTGCCTACATACGGGGCAAGGACAGTAAATCTCCGATTCTTATCGATGGAG
GCAAAATGGACCATGTCTATGTTTATCGTGTTACGTGTATGAGTGAAACTATGAAAGTCA
AGTGGACAGGGCCAGTCCAGACCGATCCAACCCAACCGGATAAGGAAGGGCCAATAACTA
TCCGGCCCCATTCATTAGGGTTGTTGGGTGGTCATGGTCTTGGCCATTCATTAGGATTGT
TGAGTGGTCTCTATAGGACCTTTTTCGATTTGATTTCTAATTTATGA