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TOP > About the Species(Solanum lycopersicum ) > genome data >Gene sequences

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SNP Detection
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Data List

All Markers Trait-Related Loci
Solanum lycopersicum

CDS Sequence

CDS ID

Solyc12g096740.1.1
CDS Infomation

Pectin lyase-like superfamily protein (AHRD V3.3 *** AT2G43870.1)
Sequence

ATGAGTCCCTTAGCAATTTTCTTCTTCTTTTTCTTCAACTTATCATTAGCAAAAAACACC
ATTTACAATGTCCAAAATTATGGAGCAAAATCCAATGGAAAAATAGATTCATCAAAAGCA
TTTTTAAGTGCATGGGGATCAGCATGTGCTTCTACGAGCGCGTCCACTATTTATGTGCCA
CGTGGAATTTACTTGATTCGTAAAATATATTTCAATGGTCAAACATGCAAAAGTAACGCT
ATTACTATACGTATCGATGGAACTCTCTTAGCTCCTTCTGATTATAATGTGATTGGCAAT
GATGGAAATTGGATAACATTTGAAAATGTCAATGGAGTTTCTATCTATGGTGGAATCTTT
GATGGTCAAGGTGCTAGTCTTTGGACTTGCAAAAAATCCCAAAAAAATTGCCCTATAGGA
ACTACAGCACTAGCTTTTTACAACTCAAACAACATTGTAATGAACGGAGTAATTGTACAA
AATAGCCAAATGTTCCATATTTTAGTAGATGGTTGCCATAACGCGATGATACAAGGAGTG
AAGGTGTTAGCCCCAGGAAATAGCCCGAATACTGATGGAATTCATGTACAATCATCTTCA
GGAGTTAGTATTAGGAACTCGAATATTGGTACTGGAGATGATTGTATCTCTATTGGCCCT
GGAAACTCGAACTTATGGATTGAAGGCATTGCTTGTGGCCCTGGCCATGGAATTAGCATT
GGAAGCTTAGGTTGGGAATCGAAAGAGCAAGGAGTACAAAATGTGACAGTTAAGACAGTT
ACCTTCACGGGTACACAGAATGGTGTGAGGGTAAAAACTTGGGCAAGGCCTAGTAGTGGC
TTTGTTAGACATGTTCTGTTTCAACATATCGTTATGTCTAACGTTCAAAACCCGATAATC
ATAGACCAAAACTACTGTCCTAATCATGAAAGTTGTCCTCATCAGGGCTCGGGTGTGAAG
ATAAGTGATGTAACGTATCAAGACATACATGGAACATCCGCTACAGAAGTTGCAGTGAAA
TTAGATTGTAGCAAAACGAATCCATGTTCTGGAATAACACTAGACAACGTAAATCTTAGT
TATAAAAATGGTCGCGCTGAATCTTCATGTGTTAATGCTGCAGGAAAAGCTTCTGGTTTC
AAAGAACTCACTAGCTGTTTATAA

Peptide Sequence

PEP ID

Solyc12g096740.1.1
PEP Infomation

Pectin lyase-like superfamily protein (AHRD V3.3 *** AT2G43870.1)
Sequence

MSPLAIFFFFFFNLSLAKNTIYNVQNYGAKSNGKIDSSKAFLSAWGSACASTSASTIYVP
RGIYLIRKIYFNGQTCKSNAITIRIDGTLLAPSDYNVIGNDGNWITFENVNGVSIYGGIF
DGQGASLWTCKKSQKNCPIGTTALAFYNSNNIVMNGVIVQNSQMFHILVDGCHNAMIQGV
KVLAPGNSPNTDGIHVQSSSGVSIRNSNIGTGDDCISIGPGNSNLWIEGIACGPGHGISI
GSLGWESKEQGVQNVTVKTVTFTGTQNGVRVKTWARPSSGFVRHVLFQHIVMSNVQNPII
IDQNYCPNHESCPHQGSGVKISDVTYQDIHGTSATEVAVKLDCSKTNPCSGITLDNVNLS
YKNGRAESSCVNAAGKASGFKELTSCL*

Transcript Sequence

Transcript ID

Solyc12g096740.1.1
Transcript Infomation

Pectin lyase-like superfamily protein (AHRD V3.3 *** AT2G43870.1)
Sequence

ATGAGTCCCTTAGCAATTTTCTTCTTCTTTTTCTTCAACTTATCATTAGCAAAAAACACC
ATTTACAATGTCCAAAATTATGGAGCAAAATCCAATGGAAAAATAGATTCATCAAAAGCA
TTTTTAAGTGCATGGGGATCAGCATGTGCTTCTACGAGCGCGTCCACTATTTATGTGCCA
CGTGGAATTTACTTGATTCGTAAAATATATTTCAATGGTCAAACATGCAAAAGTAACGCT
ATTACTATACGTATCGATGGAACTCTCTTAGCTCCTTCTGATTATAATGTGATTGGCAAT
GATGGAAATTGGATAACATTTGAAAATGTCAATGGAGTTTCTATCTATGGTGGAATCTTT
GATGGTCAAGGTGCTAGTCTTTGGACTTGCAAAAAATCCCAAAAAAATTGCCCTATAGGA
ACTACAGCACTAGCTTTTTACAACTCAAACAACATTGTAATGAACGGAGTAATTGTACAA
AATAGCCAAATGTTCCATATTTTAGTAGATGGTTGCCATAACGCGATGATACAAGGAGTG
AAGGTGTTAGCCCCAGGAAATAGCCCGAATACTGATGGAATTCATGTACAATCATCTTCA
GGAGTTAGTATTAGGAACTCGAATATTGGTACTGGAGATGATTGTATCTCTATTGGCCCT
GGAAACTCGAACTTATGGATTGAAGGCATTGCTTGTGGCCCTGGCCATGGAATTAGCATT
GGAAGCTTAGGTTGGGAATCGAAAGAGCAAGGAGTACAAAATGTGACAGTTAAGACAGTT
ACCTTCACGGGTACACAGAATGGTGTGAGGGTAAAAACTTGGGCAAGGCCTAGTAGTGGC
TTTGTTAGACATGTTCTGTTTCAACATATCGTTATGTCTAACGTTCAAAACCCGATAATC
ATAGACCAAAACTACTGTCCTAATCATGAAAGTTGTCCTCATCAGGGCTCGGGTGTGAAG
ATAAGTGATGTAACGTATCAAGACATACATGGAACATCCGCTACAGAAGTTGCAGTGAAA
TTAGATTGTAGCAAAACGAATCCATGTTCTGGAATAACACTAGACAACGTAAATCTTAGT
TATAAAAATGGTCGCGCTGAATCTTCATGTGTTAATGCTGCAGGAAAAGCTTCTGGTTTC
AAAGAACTCACTAGCTGTTTATAA