Plant GARDEN
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TOP > About the Species(Solanum lycopersicum ) > genome data >Gene sequences

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SNP Detection
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Data List

All Markers Trait-Related Loci
Solanum lycopersicum

CDS Sequence

CDS ID

Solyc12g096420.2.1
CDS Infomation

RING/U-box superfamily protein (AHRD V3.3 *** AT5G10650.2)
Sequence

ATGGATGAATATCCTGTTAAAAGAGCTGGGAATGGGCTTGTCGCCGCCAGAAGAGGTTTA
AGGGACACTGCTGAAAACAAAGATAAAAATGTTCAGTATTGTTCTAGACTTGGATGTAGT
GGCCGGGTCAATTATACTAAGAGTACCAGAGTTGGAGGCATGGAGAAACCGAGACCACTA
AGGCCTACTTTCGGTTCATCAAACGGAAAGGAAGTAGTTGGGAGTTCATCTGTGACATCC
TCTGGAATGACTACTGCAAGAAGGTCAGGCAAGGAATCTCACAAGAAGTACTCTTCTAAC
ATTGAAGATAAGCGATCAGATACCAGTTCCTTACGTAAAGAGTCACAAGTTTTAAAACAG
ATGCAGTCATCAACGGAGCGTCAATTCCAATTTGATTCAGCAAAGAGAGATACTGGATCC
AGCAAAGTTGTATTTACAGAAGTTGGTTGCTCTAGTGGAACATCGAACAGTAGACCTCGA
AAAATATTTGGTCATGGACCTGGTTCTTCCAACCAAAAGAGTCCAATGAATTCCTCTATT
TCTTCGTCGTCTAAATCCATTAGTGCTGGGACAAGGAGCAGTAGTAGTGGAGAGGGATAC
AGGTTGAGAAATCTGAAGTGCAATTCCACACCTGATGTCCTCCCATATAGTTCTTCATCA
TCAGAATCAAGTATTAGTCGAAGGGAAACAGTAAAAAGGAGAAATACTGAAGGTGAAAGC
AGTTCATCATCTAAAGGGAAAAAAATGAGTGGTGCATCGCCAAATGAAGGGCGTGCAGTT
CGTCCTGCTACTGGAATCTCCATCTCTGATTCAAGGAGTAGTAGAAGCTCGGATTTCAGT
GACGGTAATCGTGCTGTATCAGTTCGGACCCGCAGGTCAATGAATGTGAGTACTAGGTTA
AGGGGTCCTGTTCAGGATTCATTGCATACTAAGTCTTCTGGCTTAAGCCAAAATTTACCT
GAGCATGGAACTCCAAATCTAGATATGCCTAGTTCATCCAGTCAACTTTTCATGGATTCT
TCATCAAGTGATTATAGCACATATAGTTTACCTGCAAATGATTATGATGATGACGACGAA
GATGAAGATGAAGATGATGATTTACCTGGTGTAGTACCATTCACTTCAGCAGAAATCTGC
ATTAACGGTATGAACCGTGAAGCATTGCAGAGATATAACATGGATGGAGTCGCTCAGGTA
TTGCTGGCACTTGAGAGAATCGAACAAGATGAAGAGTTATCTTATGAGCGACTACTGGCG
TTGGAGTCCAATTTGTTCCTCAGTGGCCTTAACTTTTATGACCAGCATAGAGACATGAGA
CTAGATATTGATGACATGTCCTATGAGGAATTATTAGCACTTGAGGAGAGGATTGGCTCT
GTTAGTACCGCTCTGCCCGAGGAAGAACTATCAAAGTGCCTCAGGAGAAACATTTATCAG
GGTATGGCTTCAGAAACAGAAACACTAGAAGCTGATGAGGATGGAGATGACATCAAGTGC
AGCATTTGTCAGGAGGAGTACGTGATCGGAGATGAAATAGGGAACCTGGGTTGTGAACAC
GGGTATCATATGGAGTGCATAAAGCAGTGGTTTAAGCTCAAGAACTGGTGCCCTATCTGT
AAGGCTGCAGTAGAATCATCGAAACCGACATCTTAG

Peptide Sequence

PEP ID

Solyc12g096420.2.1
PEP Infomation

RING/U-box superfamily protein (AHRD V3.3 *** AT5G10650.2)
Sequence

MDEYPVKRAGNGLVAARRGLRDTAENKDKNVQYCSRLGCSGRVNYTKSTRVGGMEKPRPL
RPTFGSSNGKEVVGSSSVTSSGMTTARRSGKESHKKYSSNIEDKRSDTSSLRKESQVLKQ
MQSSTERQFQFDSAKRDTGSSKVVFTEVGCSSGTSNSRPRKIFGHGPGSSNQKSPMNSSI
SSSSKSISAGTRSSSSGEGYRLRNLKCNSTPDVLPYSSSSSESSISRRETVKRRNTEGES
SSSSKGKKMSGASPNEGRAVRPATGISISDSRSSRSSDFSDGNRAVSVRTRRSMNVSTRL
RGPVQDSLHTKSSGLSQNLPEHGTPNLDMPSSSSQLFMDSSSSDYSTYSLPANDYDDDDE
DEDEDDDLPGVVPFTSAEICINGMNREALQRYNMDGVAQVLLALERIEQDEELSYERLLA
LESNLFLSGLNFYDQHRDMRLDIDDMSYEELLALEERIGSVSTALPEEELSKCLRRNIYQ
GMASETETLEADEDGDDIKCSICQEEYVIGDEIGNLGCEHGYHMECIKQWFKLKNWCPIC
KAAVESSKPTS*

Transcript Sequence

Transcript ID

Solyc12g096420.2.1
Transcript Infomation

RING/U-box superfamily protein (AHRD V3.3 *** AT5G10650.2)
Sequence

GATTTTCAACTTTTCAATCACAATTTTGATCCAACGGTTGATATTTCTTTACAAGACTCA
ATTGGCATTACGGCATTTCAGCATTTGTTTGTTGAAGATTTGTTCGTCTTCTCTATATAG
TCTTTCTCCATTTTCATCAGCTTCGATCCTATAATCTCTCTCGTGAAAAAGGGATTTTTT
TTCTTTGGGATAAAGAAGAAGAAAACAACGAAAACAGAAGAGAAAAAGGTGGATTAATTA
AAGAAAAAAGTTTGTTTTTTTTTCGTTTTGAATGATTGTGAAACTGTAGTTTTTTCACCT
TTTTGTGATGTTTTTTGAATTGGGTTTGGGTGAAAATTGACTTTTCAGTCGTTATCTGAA
TTGGGTTTGGATAAAAAATGGATGTTTAGACTTTTTGATTCAATCGTCTTTTGGTTGATT
ATGGTGATATAGTTCAGTTTTCTGCGATTTTGCGATTTGGGTTTGGAAGTAGAGAGGCGA
AAAATGAATTTTTAGTTGTTTTCTTTCAATCGTCTTTTGGCTGATTATGGTGATATAATT
CAGTTTTCTGCGATTTTGCGAATTGGGTTTGGAAGTATTGAAGCATAAAATGAATTTTCT
GTAGTTTTTATCGATCGTCTTTTGGCTGATTATGGTGATATAGTTCAGTTTTCTGCAATT
TCTCGAATTGGGTTTGGAAGTAGAGAAGCGAAAAATGAATTTTTTCGTTGTTTTGTTTCA
ATCATCTTTTGGCTGATTATGGTGCTATAGTTCAGTTTTATGGGATTTTGGTGAATTGGG
ATTTGAAGTTAAAAGAGGCAAAACAGGATTTCTGATCGTTTTTCTTTTGGATGATTATGG
TGATATATAATTCAGTTTCCGGTGATTTGGTGAATTGGGTTTGAAGTTACATAAGAAAAT
GATATAGTTTAGTTTCCTGTGATTTTGTGAATTGGGTTTTGGAGTTGGAGAGGCAGAGAT
GAACTTTCTATTGTTTTTGCTGATTATGATACTGTTATACATCACTTTATGTGATAATTT
GAATTGACTTTGGAAGTAGAGAAGCAAAAAAATGTTTTTTTAGTAGTTTCTATCAATAGT
TTATAGCTGATTATAGTGTTATGGTTCAGTTTCCTGCGATTTCGTGAATTGAGTTTTGTA
GTAAGAGATGGGAAAAAAGATTTTCAATCAATTCTTTTGATGTGTTTTTTTACTTTCTCC
CCCATTTGATTGTTGTCTTGTTGATAAGTTTTATTGGGATTCTATGTCTATGTGTTTAAT
TTTTTTATTGAATGATGAACTTTACGTGCCTCTGATGAAAGTTTTGGTATCTACTTTTGT
TAGTTTGAAGCCACTTTACAGCTTTTTGTTACAATATTTTATGGGACAGTAGTTGAATTC
ATACGGTATTTCTCTCTTATTTTCCCTTTGTGGATGATTATTTTAGGTTGTCATTTATGT
TATATAGGGAAGTGGGTTTTAGCAAATGATTCTTGTCATTTATACTGGTTTAGCTACGGG
ATTTTCGTAGAATTTAGGGGATGTATTGATCTTTGAATTTGGTTTAAAGCTATGTGAATA
TTAGATGGGTTTATCTGGTTAAAGAAAAAGTATGTAGGGAAAAAGAATTTGGTTTTTGAT
TGCGATAGTACTATTGCCAAGGGTCTTTCGGAAACAACCTCTCTGTCTCCACGAGGCAAG
GACTCCACTTGTGGTAATACACGAGGTCTGTTGTTGTTGTTGTGATAGAACTATTGAAAA
GTTTGGATTTTTGAATGATATTTATGAGTTAGATAGAGTTATAGTCATCTACTTAGTGAA
CTGTTATGATTTATGCGTGAATCTCTTTGATGTTGATCACTTAATATGAATGAAGTTCCT
CTTAGCTAGTAATTGCTAATAGTACGAGATTACTTCAGTATTTTACTGAAATCCTGTTCT
ATCGTGAGAATTGTTGTCAGCTGCAAAAGAAATGTCTGCGTAGCCATATACAGCTTCCTT
GTTGTAAGGCTTAATCAAGGATTTCTAATTTAAGGTTATATGGTTTATGCAGATATAAAT
GGTGCTTCGTGTAAGACATGGATGAATATCCTGTTAAAAGAGCTGGGAATGGGCTTGTCG
CCGCCAGAAGAGGTTTAAGGGACACTGCTGAAAACAAAGATAAAAATGTTCAGTATTGTT
CTAGACTTGGATGTAGTGGCCGGGTCAATTATACTAAGAGTACCAGAGTTGGAGGCATGG
AGAAACCGAGACCACTAAGGCCTACTTTCGGTTCATCAAACGGAAAGGAAGTAGTTGGGA
GTTCATCTGTGACATCCTCTGGAATGACTACTGCAAGAAGGTCAGGCAAGGAATCTCACA
AGAAGTACTCTTCTAACATTGAAGATAAGCGATCAGATACCAGTTCCTTACGTAAAGAGT
CACAAGTTTTAAAACAGATGCAGTCATCAACGGAGCGTCAATTCCAATTTGATTCAGCAA
AGAGAGATACTGGATCCAGCAAAGTTGTATTTACAGAAGTTGGTTGCTCTAGTGGAACAT
CGAACAGTAGACCTCGAAAAATATTTGGTCATGGACCTGGTTCTTCCAACCAAAAGAGTC
CAATGAATTCCTCTATTTCTTCGTCGTCTAAATCCATTAGTGCTGGGACAAGGAGCAGTA
GTAGTGGAGAGGGATACAGGTTGAGAAATCTGAAGTGCAATTCCACACCTGATGTCCTCC
CATATAGTTCTTCATCATCAGAATCAAGTATTAGTCGAAGGGAAACAGTAAAAAGGAGAA
ATACTGAAGGTGAAAGCAGTTCATCATCTAAAGGGAAAAAAATGAGTGGTGCATCGCCAA
ATGAAGGGCGTGCAGTTCGTCCTGCTACTGGAATCTCCATCTCTGATTCAAGGAGTAGTA
GAAGCTCGGATTTCAGTGACGGTAATCGTGCTGTATCAGTTCGGACCCGCAGGTCAATGA
ATGTGAGTACTAGGTTAAGGGGTCCTGTTCAGGATTCATTGCATACTAAGTCTTCTGGCT
TAAGCCAAAATTTACCTGAGCATGGAACTCCAAATCTAGATATGCCTAGTTCATCCAGTC
AACTTTTCATGGATTCTTCATCAAGTGATTATAGCACATATAGTTTACCTGCAAATGATT
ATGATGATGACGACGAAGATGAAGATGAAGATGATGATTTACCTGGTGTAGTACCATTCA
CTTCAGCAGAAATCTGCATTAACGGTATGAACCGTGAAGCATTGCAGAGATATAACATGG
ATGGAGTCGCTCAGGTATTGCTGGCACTTGAGAGAATCGAACAAGATGAAGAGTTATCTT
ATGAGCGACTACTGGCGTTGGAGTCCAATTTGTTCCTCAGTGGCCTTAACTTTTATGACC
AGCATAGAGACATGAGACTAGATATTGATGACATGTCCTATGAGGAATTATTAGCACTTG
AGGAGAGGATTGGCTCTGTTAGTACCGCTCTGCCCGAGGAAGAACTATCAAAGTGCCTCA
GGAGAAACATTTATCAGGGTATGGCTTCAGAAACAGAAACACTAGAAGCTGATGAGGATG
GAGATGACATCAAGTGCAGCATTTGTCAGGAGGAGTACGTGATCGGAGATGAAATAGGGA
ACCTGGGTTGTGAACACGGGTATCATATGGAGTGCATAAAGCAGTGGTTTAAGCTCAAGA
ACTGGTGCCCTATCTGTAAGGCTGCAGTAGAATCATCGAAACCGACATCTTAGTTGCAAA
ATGGTTAGATACCTTAAACCCCAGATGTGGGAAAGCTGTTAAACAGTTTCCCTGTGTACA
AATTCATCTGGGGTTGGTTTTTGTGGATTCCTGCAATTCATATTTACTGTTCTCTTTTTC
CTCTATTCTCTTGAACTTTTTTTTGTCTCTTTTCTTTTGCTTAATTGCTCTCTTGCCATA
TGAACCAATAAACCCAGGCCTTCTTCTGGCTTTGTGGTGGTGAATGTTTTCATATTCATT
TCCTTCAACATTTGCTAAAGTGTTCCAATCATTTGCTTGCTCTAATAGTGTTTTTATGTC
GATAAACACATTCCTTAAACGAGTTTATGCATATCTTTTTCGACCATTAGTCCATAAAAT
ATCACC