Plant GARDEN
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SNP Detection
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Data List

All Markers Trait-Related Loci
Solanum lycopersicum

CDS Sequence

CDS ID

Solyc12g095900.2.1
CDS Infomation

EARLY FLOWERING 3 (AHRD V3.3 *** A0A088PY80_9ROSI)
Sequence

ATGAAGAGAGGAAAGGGTGAAGAGAAGTTGATGGGACCTATGTTTCCAAGGCTTCATGTT
AATGATACAGAAAAGGGAGGTCCAAAAGCACCTCCAAGAAACAAAATGGCTCTTTATGAG
CAGCTCAGTATTCCTTCTCAGAGATTCAAATATGGGATTTCGAATAATCGCAACAATGCA
GATATTCAGGGAAATGGACGTGAAAATGATGATTTTTTCTCAGTACAACTTCCTCCATCA
AGACATCCTGCTGAAAATCCACATTCCTGCAGTTCAAATTCAAAAACTCCTTTGCTGCCA
GTTGAGTCTAACAAGAAAACAGAAGAGGATGACTTTAGAGTTCCTATATTTGTTAAATCC
AAGGCGAGCCAAGGAAATGGAAAGCTTTATAGTACTCTGGATGGTAGAAAGCTCTCTGCC
TCTACTGCAGTAATTTCGGGGCATTCTAGAAAAGACTTGAATGATGAGAACTTCAAACAG
ATCGCCGTAGGCAGAGAGATTTCGTGCAACTCTACCTCAATTCCATCAATGGATAAGCTA
GATGATCTTCTGAAGAAAGCTGATGTACAATTGCAATATGAACCGAGAAATGACCCTGAT
AATACTTTAGGCATATTGTGTAAGAATGATCTGCTACAACCGGAATGCAGAGTTGATCCT
CAAGTTGGTGGCACCATGCTATCTGAACCTGTTAGGGTTGTTGATATTGGTGATTCTTCT
CTTCTTGTGAAGGATGTTGCATCAAAAGAGCATATAATTCCTAATAATAATCAAAGTAAT
GATAAGGAATCAAAGGAAGACAAGGCATCTGAATCATTACAAACAAAAATTGTGAACCAG
GATGACGACTTATCAGAGACTTCCATGGTGGAATCTATATTTGGAATGTACATATCTCCT
GACGATGTTGTTGCGATAATAGGTCAAAAACATTTCTGGAATGCCAGAAGAGCTATTGCC
ACCCAGCAAAGAGCGTTTGCGGTTCAAGTTTTTGAGTTGCATCGTCTAATAAAGGTCCAG
AGACTCATAGCTAGTTCACAAAGCATGCTTGAAGATAGTGCTTATTTAAGCAAAGCGGTA
AAGGATTCATCTCCTAAAAAACTTCCATTGGAGTATATCGCAAGAGATGGTCACAATGTT
CCGAAGCAGAGGAAGAATTTTGAGAAGCCAAACACTAGGATGGAATGTTCTGCGGAAAAT
ACAGAAGGCAAACCTGTGAAGGATTCATCTGCTAAAAGACTTCTGTTGGAGTATATTCCT
AGAGATGGTCACAATGTTTCAAAGCAGAAGAAGGATTTTGAGAAGCCTAACATTAGTATG
GAATGTTCGGCTGAAAACACGGTGGGAAAGGGATCCTTCTCTTCTGTGCAAAATAATAGC
CAGTCTTCAAGCTACAGTTTGTTTTCAGGTCACCCAATAGCAAATGACTCCACCATGGGG
GGTCCTTGGAGCTTCAATCAACCCTCAGGGCACCAATGGTTGATCCCAGTCATGACTCCT
TCCGAAGGACTAGTATACAAGCCATATCTTGGACCCGGAGTCACGAGTTCAATCTGTGGA
GGTTATGGACCCCCAGGATCAACTCCAATAATCGGAAACCATTCAGCTCCATCTTATGGA
ATTCCTGCTTCTCATCATCAGTATCAAGGGGTCAGAATGCCATTTACACCTCCAGCTGGT
CACAACTACTTCCCTTCGTATGGCATACCAGCTATTAATCCAGCAATCTCATCTTCAGCT
GTCGATCAATCAAGCCTGTTTGTTGCTCAAGGTTTACAAGGTCAGTTATCAGGAGGAGGA
GCTAATTTTTCTGTTCAACGTCAGAACTCGAGTAACATGCCAAGCAATAAGAATGGAACT
TTCCCAGAGGTGAAATCTCGTTCCTGTAGAGATGCTGAAATGCAGGCCAGCACTGCAAGC
AGTCCAAGTGGAACAGCTAACAAAATAACTGTGGACAACGCCACAGAACGAAGAAACGTT
CTTCCTCTATTCCCAACTTCACCAGCTACCAAGAACCTGGATATAAGCTCCCAACCTCAA
CTGCCTAGTCATCATGCTCGAGTCATCAAAGTCGTACCGCGTAATGCAAGGTCTGCCACA
GAATCTGCTGCTCGGATTTTTCAGTCTATACAAGAAGAGAGAAAACAGTATGATTCTGTT
GTTAATTAA

Peptide Sequence

PEP ID

Solyc12g095900.2.1
PEP Infomation

EARLY FLOWERING 3 (AHRD V3.3 *** A0A088PY80_9ROSI)
Sequence

MKRGKGEEKLMGPMFPRLHVNDTEKGGPKAPPRNKMALYEQLSIPSQRFKYGISNNRNNA
DIQGNGRENDDFFSVQLPPSRHPAENPHSCSSNSKTPLLPVESNKKTEEDDFRVPIFVKS
KASQGNGKLYSTLDGRKLSASTAVISGHSRKDLNDENFKQIAVGREISCNSTSIPSMDKL
DDLLKKADVQLQYEPRNDPDNTLGILCKNDLLQPECRVDPQVGGTMLSEPVRVVDIGDSS
LLVKDVASKEHIIPNNNQSNDKESKEDKASESLQTKIVNQDDDLSETSMVESIFGMYISP
DDVVAIIGQKHFWNARRAIATQQRAFAVQVFELHRLIKVQRLIASSQSMLEDSAYLSKAV
KDSSPKKLPLEYIARDGHNVPKQRKNFEKPNTRMECSAENTEGKPVKDSSAKRLLLEYIP
RDGHNVSKQKKDFEKPNISMECSAENTVGKGSFSSVQNNSQSSSYSLFSGHPIANDSTMG
GPWSFNQPSGHQWLIPVMTPSEGLVYKPYLGPGVTSSICGGYGPPGSTPIIGNHSAPSYG
IPASHHQYQGVRMPFTPPAGHNYFPSYGIPAINPAISSSAVDQSSLFVAQGLQGQLSGGG
ANFSVQRQNSSNMPSNKNGTFPEVKSRSCRDAEMQASTASSPSGTANKITVDNATERRNV
LPLFPTSPATKNLDISSQPQLPSHHARVIKVVPRNARSATESAARIFQSIQEERKQYDSV
VN*

Transcript Sequence

Transcript ID

Solyc12g095900.2.1
Transcript Infomation

EARLY FLOWERING 3 (AHRD V3.3 *** A0A088PY80_9ROSI)
Sequence

GAGTCACTAAATATGAACCGATACCATAGACATTCCAATAGCGAAAGAGATAAAATATAC
AATCTTACGAAATTAAAATAAAACAAACGAACTAAATTATCGGAGATAAGGATATTTTAA
TAATCCTAATGAATAAATACTCTCTTATTGGATGTTCTACATTTCTATCTGTTCTATCTA
TCCAAGAAAAAGATTACACTTTTTTGCCCCTTCCATTTTCACACAGTCGTTTGATCTTTT
GCCGACTCTTCCCTTGTTTTTTTTTCTCAACTGTAATCTCTTTCTTCATATTATTGTGCT
TACCAACAAGGCCTGTTACATGATCACAGAAAAATATAATAGTAATTTTGTGAAATTATA
CATCTTTTTTGCTTCTGTGTGCTTCAGAAATCTCTTGATTTCTATGTAAAGATTGTGTTT
TGGGTATTTGGGTCGGTAGAATTCTTGTTTTTTTAGGTGGGGTTTGCTTGGTTTTCTTCA
ATTTTGATTGGTTTTGTTGAAAAGTTCAGAAATTTGATGTAATTGTACGGATTTCTTTGA
ATTTTGGAAGTTGAATGTATGGTAAAGTTTCGTTTTTTTGGTTTAATTTAATGAATGTTG
GAGATTGGGTGAACCTGTTGAGAAGCTATTAAAGGGAAGAAATGAAGAGAGGAAAGGGTG
AAGAGAAGTTGATGGGACCTATGTTTCCAAGGCTTCATGTTAATGATACAGAAAAGGGAG
GTCCAAAAGCACCTCCAAGAAACAAAATGGCTCTTTATGAGCAGCTCAGTATTCCTTCTC
AGAGATTCAAATATGGGATTTCGAATAATCGCAACAATGCAGATATTCAGGGAAATGGAC
GTGAAAATGATGATTTTTTCTCAGTACAACTTCCTCCATCAAGACATCCTGCTGAAAATC
CACATTCCTGCAGTTCAAATTCAAAAACTCCTTTGCTGCCAGTTGAGTCTAACAAGAAAA
CAGAAGAGGATGACTTTAGAGTTCCTATATTTGTTAAATCCAAGGCGAGCCAAGGAAATG
GAAAGCTTTATAGTACTCTGGATGGTAGAAAGCTCTCTGCCTCTACTGCAGTAATTTCGG
GGCATTCTAGAAAAGACTTGAATGATGAGAACTTCAAACAGATCGCCGTAGGCAGAGAGA
TTTCGTGCAACTCTACCTCAATTCCATCAATGGATAAGCTAGATGATCTTCTGAAGAAAG
CTGATGTACAATTGCAATATGAACCGAGAAATGACCCTGATAATACTTTAGGCATATTGT
GTAAGAATGATCTGCTACAACCGGAATGCAGAGTTGATCCTCAAGTTGGTGGCACCATGC
TATCTGAACCTGTTAGGGTTGTTGATATTGGTGATTCTTCTCTTCTTGTGAAGGATGTTG
CATCAAAAGAGCATATAATTCCTAATAATAATCAAAGTAATGATAAGGAATCAAAGGAAG
ACAAGGCATCTGAATCATTACAAACAAAAATTGTGAACCAGGATGACGACTTATCAGAGA
CTTCCATGGTGGAATCTATATTTGGAATGTACATATCTCCTGACGATGTTGTTGCGATAA
TAGGTCAAAAACATTTCTGGAATGCCAGAAGAGCTATTGCCACCCAGCAAAGAGCGTTTG
CGGTTCAAGTTTTTGAGTTGCATCGTCTAATAAAGGTCCAGAGACTCATAGCTAGTTCAC
AAAGCATGCTTGAAGATAGTGCTTATTTAAGCAAAGCGGTAAAGGATTCATCTCCTAAAA
AACTTCCATTGGAGTATATCGCAAGAGATGGTCACAATGTTCCGAAGCAGAGGAAGAATT
TTGAGAAGCCAAACACTAGGATGGAATGTTCTGCGGAAAATACAGAAGGCAAACCTGTGA
AGGATTCATCTGCTAAAAGACTTCTGTTGGAGTATATTCCTAGAGATGGTCACAATGTTT
CAAAGCAGAAGAAGGATTTTGAGAAGCCTAACATTAGTATGGAATGTTCGGCTGAAAACA
CGGTGGGAAAGGGATCCTTCTCTTCTGTGCAAAATAATAGCCAGTCTTCAAGCTACAGTT
TGTTTTCAGGTCACCCAATAGCAAATGACTCCACCATGGGGGGTCCTTGGAGCTTCAATC
AACCCTCAGGGCACCAATGGTTGATCCCAGTCATGACTCCTTCCGAAGGACTAGTATACA
AGCCATATCTTGGACCCGGAGTCACGAGTTCAATCTGTGGAGGTTATGGACCCCCAGGAT
CAACTCCAATAATCGGAAACCATTCAGCTCCATCTTATGGAATTCCTGCTTCTCATCATC
AGTATCAAGGGGTCAGAATGCCATTTACACCTCCAGCTGGTCACAACTACTTCCCTTCGT
ATGGCATACCAGCTATTAATCCAGCAATCTCATCTTCAGCTGTCGATCAATCAAGCCTGT
TTGTTGCTCAAGGTTTACAAGGTCAGTTATCAGGAGGAGGAGCTAATTTTTCTGTTCAAC
GTCAGAACTCGAGTAACATGCCAAGCAATAAGAATGGAACTTTCCCAGAGGTGAAATCTC
GTTCCTGTAGAGATGCTGAAATGCAGGCCAGCACTGCAAGCAGTCCAAGTGGAACAGCTA
ACAAAATAACTGTGGACAACGCCACAGAACGAAGAAACGTTCTTCCTCTATTCCCAACTT
CACCAGCTACCAAGAACCTGGATATAAGCTCCCAACCTCAACTGCCTAGTCATCATGCTC
GAGTCATCAAAGTCGTACCGCGTAATGCAAGGTCTGCCACAGAATCTGCTGCTCGGATTT
TTCAGTCTATACAAGAAGAGAGAAAACAGTATGATTCTGTTGTTAATTAATCATCTATAG
ACAGTAGTTACTTATCTAGTCATTTAGGTGACCATTAGTTCATTATAATGTGTTTTATGT
ATAATTTCTTGTAACCTTTTAGATAACTGGAACTTATTTGGTAAGTGAGTCATTTTGTAA
ATAACATACTTACCTTATAATTATATAACTATTAAATGTTTTTTTCTGTCTTTGTTTATC
T