Gene sequences

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Trait-Related Loci

Solanum lycopersicum

CDS Sequence

CDS ID	Solyc12g094490.2.1
CDS Infomation	Pre-mRNA cleavage complex 2 Pcf11 (AHRD V3.3 *** A0A0B0PJQ4_GOSAR)
Sequence	ATGGCTTTAGCCGGCGGCTATGCAAATTCTAAGTTAATCCAAAACGACGCTGCCGTGGCG CCACCAAAACCTTTGTCATCTTCTGTAATCGAACGATATAAGTCGGCGTTGAAGGAGAGG GAAATAGAAATTAGGGCTTCTATGCAGGGAGGTGATGATGATGTTATCGTGTTGCCTCCG TCTATGAATGAGATTGTTAGGCTTTATGAAATGTTGTTGTCGGAACTGGCTTTTAATTCT AAGCCTATCATTACTGACCTTACCATCATTGCTGGCGAACAGAGAGAACATGGTGAAGGC ATTGCTCATGCGATTTGTAATCGGATTTTAGAGGTCCCAGTTGAGCAGAAACTACCTGCA TTATACCTTCTGGATAGTGTTGTAAAAAATATTGGCAAGGACTACATCAAGCATTTCTCT GCCCATTTACCTGAGGTTTTCTGTGAGGCATATAGGCAAGTGCACCCTAGCATGCATCCT GCAATGCGCCACCTCTTTGGGACATGGTCAACTGTGTTCCCAGCACCTGTTCTCCAGAAA ATTGAAACTCGTCTTCAGTTTTCACAGCCGGGGGTCCAACAATCTTCTGGCTTGACTTCG TCAAGAGCATCTGAATCACCGCGACCAGCTCATGGCATTCATGTAAATCCAAAATATTTG GAAGCAAGGCGTCAGCTTGGGCACTCCACTATTGATTCAGTAAGAGCTGAAAATTCTACA GGTCATATATCTTCAGATCTGGAAGCCAAGCAAGTTCTGTCTACATCTTCAAAGAATGCG AGATCATCCTCTCCTTATAGAGTGGGGCCTCCGAGGTCATTGTCACCCACCCTCAACGAG TTTGCCTTGGATAATCCTGCCATAGGACTCAGAGAAAGGGCCTCACCGTCTCATACTGCA CTTGACTATGGGTTTAGCAGAGTAAGAGGTAGAGATGTTGAGAGGAGTGAGTGGCAGAGA ATTTTGCCTGATGGGGCCAATCAGCAACCAGACGTTCCTCCTAAATATCGCATAAACAAG GGAATTGATCTTCAAGGACCTAGAGCTTTGATTGATGCTTATGGAATTGATGAAAGGGAA AAAGTAGCCCATCTGAGGCAGCAAAAGACTGGGAATGCCACTATTAATGGCTTAGGCAAT GGGTTAGCAGTTAAGACATGGCAAAATACCGAAGAGGAAGAGTTTAACTGGGAAGATATG AGTCCAACTTTAGCAGATCAGAGCCCGTTTAATGATTTGTCAGCATCTCTTCGCCATCCT CAGAGTATCAGGATGAGACCTTGTGTTGATTCACAACATGCTGGGCCATTGGTGGCTGAT CCTAGAAGGAACTGGGCTAATCGAGGGCAATATTCTTTAGTTCATGATTCTTCCGTGGAT GATGTTCACTCGTCTGGTCGAGGGGCGAGAAATAAAATTACTGGATATTGCGATGAGACA TCTCTGATTTCAGGTTCACATTATCTTCAAAAGCTTCCAGAAAATGTGCCACAGTTGCCT CTAAGACATTTAAAGGGTGAAGGAAGTGGAATCTCATCAGTGACCGGTGAATCAAAGCAC CCTTTGATTGGCAATTTGGCTGCTGATGGACATACTTGGAGGCCACCATATGTTCCGCCA AGAATGAATCCTACTTTTGACTCTTCAGTTCAGGATGTTCGGGTGGTTACTGGACGGGGC CCTGGTGTACCATGGCCTCCCCAAAATGTGCATACTCCCCATTCTTTGACTTCAAAACCT GTTGTTCTGCCTCATAATCACGTCAGAAGTCCTTATGAAGTAAATAATGCAAGCAATTCA GTTGTCAATCATACTTTGGACAGGCCAGTTCTTCCTGAGCAACATATTGATAATTTGAAG AGCAGCTCACATATCAAGTTTCCACAATTTCCTAGTCAACACCCCACATCATTTTCTACA AGTCATCAAAATTCTGAACAAATGGCTTCAGCAGAACCTCAGCTATTGCTTTCTCAGCGT ATTCATCAGACTATGCCTCCAAGTGCCTCACTTCCAGCCTCAAACCATTTGCTACCACCA ACTTATAGATACCCTCTACCGGGTCCTGGTTCTTCTATAGGTCCTCACTTCCCCCGTCCA GTTTCAGGTCCACAAGTGTCTATGCCATTGGTTAATGTCCCAAATACGTCATCACAGTTT TCCTCAGGAGCTTTACCACCTTTTCCCAGAGGCCCACTTCCTATGCCATCTAAATTCATG CCAGCATCCCAAAATCCAGGTCAGGTTACTCCTAACCCTCCAGCAGCAGGCTTTTCAAGC TTGATTAACTCACTCATGGCACAAGGTTTGATTTCATTGACAAATCAAGCTCCCGCTCAG GATCCTGTGGGCCTTGATTTTAATCCGGATCTTCTGAAGGTTCGTCACGATTCTGCAGTA ACTGCTTTATATGCTGATCTTCCAAGACAGTGCACAACTTGTGGCCTACGATTTAAATGC CAAGAGGCTCACAGTAGTCATATGGATTGGCATGTAACCAAGAATCGAGTATCGAAAAAT CGCAAGCAGAAGTCTTCTCGTAAGTGGTTTGTAAGCGTCAACATGTGGCTTAGTGGTACA GAGGCGTTGGGATCTGATGCAGTTCCTGGATTTCTACCGACTGAGCAAGTTGTCGAAACG AAGGATGATGAAGAATTGGCCGTCCCAGCTGACGATGAGCAGAATGCTTGTGCACTGTGT GGAGAGCCTTTTGATGATTTTTACAGCGATGAGACTGAAGAATGGATGTATAGGGGGGCT GTCTACATGAATGCACCAAGTGGGTCAACAGTTGGAATGGAAAGGTCTCAGTTGGGTCCA ATTATTCATGCGAAATGCAGATCTGAATCTAGTGCTCCACATGAGGACTCCAGAAAAGTG GATGAGGGTCCAGAAGATGAAAGTCAAAGGAAACGAATGCGGAGTTAG

Peptide Sequence

PEP ID	Solyc12g094490.2.1
PEP Infomation	Pre-mRNA cleavage complex 2 Pcf11 (AHRD V3.3 *** A0A0B0PJQ4_GOSAR)
Sequence	MALAGGYANSKLIQNDAAVAPPKPLSSSVIERYKSALKEREIEIRASMQGGDDDVIVLPP SMNEIVRLYEMLLSELAFNSKPIITDLTIIAGEQREHGEGIAHAICNRILEVPVEQKLPA LYLLDSVVKNIGKDYIKHFSAHLPEVFCEAYRQVHPSMHPAMRHLFGTWSTVFPAPVLQK IETRLQFSQPGVQQSSGLTSSRASESPRPAHGIHVNPKYLEARRQLGHSTIDSVRAENST GHISSDLEAKQVLSTSSKNARSSSPYRVGPPRSLSPTLNEFALDNPAIGLRERASPSHTA LDYGFSRVRGRDVERSEWQRILPDGANQQPDVPPKYRINKGIDLQGPRALIDAYGIDERE KVAHLRQQKTGNATINGLGNGLAVKTWQNTEEEEFNWEDMSPTLADQSPFNDLSASLRHP QSIRMRPCVDSQHAGPLVADPRRNWANRGQYSLVHDSSVDDVHSSGRGARNKITGYCDET SLISGSHYLQKLPENVPQLPLRHLKGEGSGISSVTGESKHPLIGNLAADGHTWRPPYVPP RMNPTFDSSVQDVRVVTGRGPGVPWPPQNVHTPHSLTSKPVVLPHNHVRSPYEVNNASNS VVNHTLDRPVLPEQHIDNLKSSSHIKFPQFPSQHPTSFSTSHQNSEQMASAEPQLLLSQR IHQTMPPSASLPASNHLLPPTYRYPLPGPGSSIGPHFPRPVSGPQVSMPLVNVPNTSSQF SSGALPPFPRGPLPMPSKFMPASQNPGQVTPNPPAAGFSSLINSLMAQGLISLTNQAPAQ DPVGLDFNPDLLKVRHDSAVTALYADLPRQCTTCGLRFKCQEAHSSHMDWHVTKNRVSKN RKQKSSRKWFVSVNMWLSGTEALGSDAVPGFLPTEQVVETKDDEELAVPADDEQNACALC GEPFDDFYSDETEEWMYRGAVYMNAPSGSTVGMERSQLGPIIHAKCRSESSAPHEDSRKV DEGPEDESQRKRMRS*

Transcript Sequence

Transcript ID	Solyc12g094490.2.1
Transcript Infomation	Pre-mRNA cleavage complex 2 Pcf11 (AHRD V3.3 *** A0A0B0PJQ4_GOSAR)
Sequence	GGGGACTCTCATTTCATCACTCTCTCTTTCTTCTTCTAACCCCCCACCCCCCTTTCTCCC CCCACCCCCACACCACCGGAGGCATAAACCCTAACTCTACTCCGATGGCTTTAGCCGGCG GCTATGCAAATTCTAAGTTAATCCAAAACGACGCTGCCGTGGCGCCACCAAAACCTTTGT CATCTTCTGTAATCGAACGATATAAGTCGGCGTTGAAGGAGAGGGAAATAGAAATTAGGG CTTCTATGCAGGGAGGTGATGATGATGTTATCGTGTTGCCTCCGTCTATGAATGAGATTG TTAGGCTTTATGAAATGTTGTTGTCGGAACTGGCTTTTAATTCTAAGCCTATCATTACTG ACCTTACCATCATTGCTGGCGAACAGAGAGAACATGGTGAAGGCATTGCTCATGCGATTT GTAATCGGATTTTAGAGGTCCCAGTTGAGCAGAAACTACCTGCATTATACCTTCTGGATA GTGTTGTAAAAAATATTGGCAAGGACTACATCAAGCATTTCTCTGCCCATTTACCTGAGG TTTTCTGTGAGGCATATAGGCAAGTGCACCCTAGCATGCATCCTGCAATGCGCCACCTCT TTGGGACATGGTCAACTGTGTTCCCAGCACCTGTTCTCCAGAAAATTGAAACTCGTCTTC AGTTTTCACAGCCGGGGGTCCAACAATCTTCTGGCTTGACTTCGTCAAGAGCATCTGAAT CACCGCGACCAGCTCATGGCATTCATGTAAATCCAAAATATTTGGAAGCAAGGCGTCAGC TTGGGCACTCCACTATTGATTCAGTAAGAGCTGAAAATTCTACAGGTCATATATCTTCAG ATCTGGAAGCCAAGCAAGTTCTGTCTACATCTTCAAAGAATGCGAGATCATCCTCTCCTT ATAGAGTGGGGCCTCCGAGGTCATTGTCACCCACCCTCAACGAGTTTGCCTTGGATAATC CTGCCATAGGACTCAGAGAAAGGGCCTCACCGTCTCATACTGCACTTGACTATGGGTTTA GCAGAGTAAGAGGTAGAGATGTTGAGAGGAGTGAGTGGCAGAGAATTTTGCCTGATGGGG CCAATCAGCAACCAGACGTTCCTCCTAAATATCGCATAAACAAGGGAATTGATCTTCAAG GACCTAGAGCTTTGATTGATGCTTATGGAATTGATGAAAGGGAAAAAGTAGCCCATCTGA GGCAGCAAAAGACTGGGAATGCCACTATTAATGGCTTAGGCAATGGGTTAGCAGTTAAGA CATGGCAAAATACCGAAGAGGAAGAGTTTAACTGGGAAGATATGAGTCCAACTTTAGCAG ATCAGAGCCCGTTTAATGATTTGTCAGCATCTCTTCGCCATCCTCAGAGTATCAGGATGA GACCTTGTGTTGATTCACAACATGCTGGGCCATTGGTGGCTGATCCTAGAAGGAACTGGG CTAATCGAGGGCAATATTCTTTAGTTCATGATTCTTCCGTGGATGATGTTCACTCGTCTG GTCGAGGGGCGAGAAATAAAATTACTGGATATTGCGATGAGACATCTCTGATTTCAGGTT CACATTATCTTCAAAAGCTTCCAGAAAATGTGCCACAGTTGCCTCTAAGACATTTAAAGG GTGAAGGAAGTGGAATCTCATCAGTGACCGGTGAATCAAAGCACCCTTTGATTGGCAATT TGGCTGCTGATGGACATACTTGGAGGCCACCATATGTTCCGCCAAGAATGAATCCTACTT TTGACTCTTCAGTTCAGGATGTTCGGGTGGTTACTGGACGGGGCCCTGGTGTACCATGGC CTCCCCAAAATGTGCATACTCCCCATTCTTTGACTTCAAAACCTGTTGTTCTGCCTCATA ATCACGTCAGAAGTCCTTATGAAGTAAATAATGCAAGCAATTCAGTTGTCAATCATACTT TGGACAGGCCAGTTCTTCCTGAGCAACATATTGATAATTTGAAGAGCAGCTCACATATCA AGTTTCCACAATTTCCTAGTCAACACCCCACATCATTTTCTACAAGTCATCAAAATTCTG AACAAATGGCTTCAGCAGAACCTCAGCTATTGCTTTCTCAGCGTATTCATCAGACTATGC CTCCAAGTGCCTCACTTCCAGCCTCAAACCATTTGCTACCACCAACTTATAGATACCCTC TACCGGGTCCTGGTTCTTCTATAGGTCCTCACTTCCCCCGTCCAGTTTCAGGTCCACAAG TGTCTATGCCATTGGTTAATGTCCCAAATACGTCATCACAGTTTTCCTCAGGAGCTTTAC CACCTTTTCCCAGAGGCCCACTTCCTATGCCATCTAAATTCATGCCAGCATCCCAAAATC CAGGTCAGGTTACTCCTAACCCTCCAGCAGCAGGCTTTTCAAGCTTGATTAACTCACTCA TGGCACAAGGTTTGATTTCATTGACAAATCAAGCTCCCGCTCAGGATCCTGTGGGCCTTG ATTTTAATCCGGATCTTCTGAAGGTTCGTCACGATTCTGCAGTAACTGCTTTATATGCTG ATCTTCCAAGACAGTGCACAACTTGTGGCCTACGATTTAAATGCCAAGAGGCTCACAGTA GTCATATGGATTGGCATGTAACCAAGAATCGAGTATCGAAAAATCGCAAGCAGAAGTCTT CTCGTAAGTGGTTTGTAAGCGTCAACATGTGGCTTAGTGGTACAGAGGCGTTGGGATCTG ATGCAGTTCCTGGATTTCTACCGACTGAGCAAGTTGTCGAAACGAAGGATGATGAAGAAT TGGCCGTCCCAGCTGACGATGAGCAGAATGCTTGTGCACTGTGTGGAGAGCCTTTTGATG ATTTTTACAGCGATGAGACTGAAGAATGGATGTATAGGGGGGCTGTCTACATGAATGCAC CAAGTGGGTCAACAGTTGGAATGGAAAGGTCTCAGTTGGGTCCAATTATTCATGCGAAAT GCAGATCTGAATCTAGTGCTCCACATGAGGACTCCAGAAAAGTGGATGAGGGTCCAGAAG ATGAAAGTCAAAGGAAACGAATGCGGAGTTAGCTTCATTAAATCAGCTTCTAGGTACCAT GCCAGAATCATGTACATGTACAGGAGTTGTAACATCAAAGCTTCTTGTCAGGAAAGGTTT CATACAGTCTCTATTTTCGTTTCCATTTCGGATCTTCTTTCATCTGTTTTCTTTTCGTGT TCACCTTTTTGAGAGGCGCACTACCAGCCAGGTGCTTTTCGTATCCTTGGAGTGTTAAAA CATTTGTGGGTTTAATCCATTTTTTTCTCCTTTCACATAGAGGTTTCTGCAGGAGGATAT GCAGGGAACGCTTCGTTGATCTTCTTCAACCTCGTGCTCTGTCAGGACAGAATAAATCTA CTGTAGGTGCAATTAGAATATCCTTCTGGTCTTATGAGATGTAAAAATATGAAAATTTTC CGTCTAAAATTCACTAGGCGATCTTCAAGCTGTTTCGATATGATATCTACTGCTTCTCTG TGTTGAATTACTCATCTGCTTCAGTGAAACATGTTGGCATTTGTTATGTGCTTGAGACAG AGAAGTCTAATACTAGTTCTTCTTTT