Plant GARDEN
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TOP > About the Species(Solanum lycopersicum ) > genome data >Gene sequences

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SNP Detection
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Data List

All Markers Trait-Related Loci
Solanum lycopersicum

CDS Sequence

CDS ID

Solyc12g089090.2.1
CDS Infomation

Protein phosphatase 2c, putative (AHRD V3.3 *** B9R7R1_RICCO)
Sequence

ATGCCGAGTAACTATCTTTTTAGATTAAGCCGGGCTGCTAGACAGGGACTCCAGAAATCC
ATATCTGGGAAAGAAAGTGGGCTCCAGGATTCGGTTGAGATTTTGGTTGCCCAAGGGAGA
TTGTTGTTTGGCAATTCAAAGTGCTTCTATTCAGTACCATTTGCAAGAGCAACTGACCTG
AATGTGCTTGTCCGGCCTGGAACCTTAGCTGCCGCACAGGCGAATTTGCACGTAGCAAAC
CAGAAAAAGAATATTTCTGTAGTTGGAGCTATTTCTCGTGCAGTTTCAATTCCTTCTGTG
TCAGGACCAGCATTTCACATCTGTGGCTATCACATTGATCGCGTGATATTGGACCCGGCT
GAAAGTTTGTCTGACAGCGACTCTCACAAAGCACCTATGGAAATCTGTGGTTCTCGAACT
TGTCCTCCTGGCTGTTCCTCAAGCAAAATGACTTCAAGACATCTCAATGGTGTTCTTTCT
GTAAATAATCCTATTACCTCTTATAGCAATAAAAGCTTTGATAATTGTAGAAAAGCCAGC
ATGAGTTTGAGAAACAAAAATCAGCCCAACAACTTTTTACTTTACGGATATTTCGCATAC
AATGTGGCAAAGAGACGGGGAAATTCTAATCTATATGAAGGCTTTGGTTTGATGGGGTTC
CATACTTCATCAACTGCTTCTTCTTCTACTGGCACTGCTCATGATGTGTCATTTGGTAGC
TCTACGTGTGGGGTGCAGCTCTCAAGTTCAGCAGATTCATCTGAACAGAATATCCGCATT
GACAGAACCCTGAAACTAAATTCCGGATCATGTTACCTGCCTCATCCTGATAAAGAAGAT
ACTGGTGGAGAGGATGCTCATTTTATTTGCAGTGATGAACAAGCAATTGGTGTAGCTGAT
GGTGTTGGTGGTTGGGCTGATCTTGGTATTGATGCTGGGAAGTATGCACGAGAGCTAATG
TCGAACTCAGTGGCCGCAATTCAAGATGAGCCAAAAGGTTCAGTGGACCCAGCCAGAGTC
CTCGATAAAGCTTATACATGCACAAAAGCCAAAGGTTCCTCAACTGCCTGTATAATTGCC
CTCACAGATCAGGGTCTGCATGCTATTAATTTAGGAGATAGCGGATTCATTGTGGTCAGA
GATGGATCTACTGTTTTCAGATCCCCTGTGCAGCAGCATGATTTCAATTTCACGTATCAA
CTAGAGAGTGGTAATGCTGGTGACTTACCAAGTTCTGGAGAGGTCTTCAAAATACCAGTG
GCACAAGGAGATGTTATAATAGCTGGTACTGATGGGTTGTTTGACAATTTGTACAACAAT
GATATTAATGCAATCGTCGTTCATGCAACGAGAGCTGGCTTAGGGCCACAGGTGACAGCT
CAGAAGATAGCTGCATTAGCTCGGCAAAGAGCACAGGATAAAAACAGGCAGACCCCTTTC
TCTTCTGCAGCTCAAGAAGCTGGGTTCCGTTACTATGGAGGGAAGCTGGACGATATAACT
GTGGTTGTATCCTACATAAGCAGTGACAGAAACGAAAGATCTAACAGCTTAAAGATGTAG

Peptide Sequence

PEP ID

Solyc12g089090.2.1
PEP Infomation

Protein phosphatase 2c, putative (AHRD V3.3 *** B9R7R1_RICCO)
Sequence

MPSNYLFRLSRAARQGLQKSISGKESGLQDSVEILVAQGRLLFGNSKCFYSVPFARATDL
NVLVRPGTLAAAQANLHVANQKKNISVVGAISRAVSIPSVSGPAFHICGYHIDRVILDPA
ESLSDSDSHKAPMEICGSRTCPPGCSSSKMTSRHLNGVLSVNNPITSYSNKSFDNCRKAS
MSLRNKNQPNNFLLYGYFAYNVAKRRGNSNLYEGFGLMGFHTSSTASSSTGTAHDVSFGS
STCGVQLSSSADSSEQNIRIDRTLKLNSGSCYLPHPDKEDTGGEDAHFICSDEQAIGVAD
GVGGWADLGIDAGKYARELMSNSVAAIQDEPKGSVDPARVLDKAYTCTKAKGSSTACIIA
LTDQGLHAINLGDSGFIVVRDGSTVFRSPVQQHDFNFTYQLESGNAGDLPSSGEVFKIPV
AQGDVIIAGTDGLFDNLYNNDINAIVVHATRAGLGPQVTAQKIAALARQRAQDKNRQTPF
SSAAQEAGFRYYGGKLDDITVVVSYISSDRNERSNSLKM*

Transcript Sequence

Transcript ID

Solyc12g089090.2.1
Transcript Infomation

Protein phosphatase 2c, putative (AHRD V3.3 *** B9R7R1_RICCO)
Sequence

TCTCCGTTTTTAATTGCTAACCATATATGTAAAACATTTCAAAATTGAAAAGTCAAAACT
CTTCATTGGTGATTATTAGGGTTTGTTGGTTGGGGAAGATTAACTGTGAGCCCTTTAAGC
TCAGCTCAAGAGAGAGAAAGAGAGAGGAGAGAGAAGCCTCTAACCTAACAAACTCTCAAG
ATTCATATGAAGGCAAATCAAGTTACATTTGGGGGCATTTAAAGAAACAAATTGTTTTGA
GCTCTTAAGTTTTTTTATTTGTTTGTTTGTGATTTTATATGGATTTTGTCATCTGGGTGT
TTGCTTCCTGCAATTATTATTCATAAAGTAGGTGTCTGGATTCTCAAAGTTATATTGGAG
AAGGAGGGTAGTGCATGAGTTGATGCTTGATATTAAATGTACTGAGCGTTATGATAGTTT
TTGTGTATAGTAGTGGTTGTTGTGTTTTTTCCTATAAAGAGGTGCAAGCCAATCAGCTGT
GGTTAATAAGCCGATATGCCGAGTAACTATCTTTTTAGATTAAGCCGGGCTGCTAGACAG
GGACTCCAGAAATCCATATCTGGGAAAGAAAGTGGGCTCCAGGATTCGGTTGAGATTTTG
GTTGCCCAAGGGAGATTGTTGTTTGGCAATTCAAAGTGCTTCTATTCAGTACCATTTGCA
AGAGCAACTGACCTGAATGTGCTTGTCCGGCCTGGAACCTTAGCTGCCGCACAGGCGAAT
TTGCACGTAGCAAACCAGAAAAAGAATATTTCTGTAGTTGGAGCTATTTCTCGTGCAGTT
TCAATTCCTTCTGTGTCAGGACCAGCATTTCACATCTGTGGCTATCACATTGATCGCGTG
ATATTGGACCCGGCTGAAAGTTTGTCTGACAGCGACTCTCACAAAGCACCTATGGAAATC
TGTGGTTCTCGAACTTGTCCTCCTGGCTGTTCCTCAAGCAAAATGACTTCAAGACATCTC
AATGGTGTTCTTTCTGTAAATAATCCTATTACCTCTTATAGCAATAAAAGCTTTGATAAT
TGTAGAAAAGCCAGCATGAGTTTGAGAAACAAAAATCAGCCCAACAACTTTTTACTTTAC
GGATATTTCGCATACAATGTGGCAAAGAGACGGGGAAATTCTAATCTATATGAAGGCTTT
GGTTTGATGGGGTTCCATACTTCATCAACTGCTTCTTCTTCTACTGGCACTGCTCATGAT
GTGTCATTTGGTAGCTCTACGTGTGGGGTGCAGCTCTCAAGTTCAGCAGATTCATCTGAA
CAGAATATCCGCATTGACAGAACCCTGAAACTAAATTCCGGATCATGTTACCTGCCTCAT
CCTGATAAAGAAGATACTGGTGGAGAGGATGCTCATTTTATTTGCAGTGATGAACAAGCA
ATTGGTGTAGCTGATGGTGTTGGTGGTTGGGCTGATCTTGGTATTGATGCTGGGAAGTAT
GCACGAGAGCTAATGTCGAACTCAGTGGCCGCAATTCAAGATGAGCCAAAAGGTTCAGTG
GACCCAGCCAGAGTCCTCGATAAAGCTTATACATGCACAAAAGCCAAAGGTTCCTCAACT
GCCTGTATAATTGCCCTCACAGATCAGGGTCTGCATGCTATTAATTTAGGAGATAGCGGA
TTCATTGTGGTCAGAGATGGATCTACTGTTTTCAGATCCCCTGTGCAGCAGCATGATTTC
AATTTCACGTATCAACTAGAGAGTGGTAATGCTGGTGACTTACCAAGTTCTGGAGAGGTC
TTCAAAATACCAGTGGCACAAGGAGATGTTATAATAGCTGGTACTGATGGGTTGTTTGAC
AATTTGTACAACAATGATATTAATGCAATCGTCGTTCATGCAACGAGAGCTGGCTTAGGG
CCACAGGTGACAGCTCAGAAGATAGCTGCATTAGCTCGGCAAAGAGCACAGGATAAAAAC
AGGCAGACCCCTTTCTCTTCTGCAGCTCAAGAAGCTGGGTTCCGTTACTATGGAGGGAAG
CTGGACGATATAACTGTGGTTGTATCCTACATAAGCAGTGACAGAAACGAAAGATCTAAC
AGCTTAAAGATGTAGTTAAGAGCTTTCGTTTCTTGCTTTGTATCGCCTGCTTCGGTCTAC
AGCCTACAGCCTACAGGTTTTAAGCTCCATTTGATGGGGATGTCAAATCTTTGCTTATAT
CGTGTGAACTGTCTCGAAGATCACTTTTACTTCTGATGTACTAGCTTCTTGGCAATTTAC
CTCCTCTTTCCCACTCAATGCATTACACACACAAGCGAAGAAGGTAGATGGCAAACCACT
TCCTCCCTCTCTCCCTCCCTCCCGTTAGCGGAAAGATCATATGAGTGCTGATCATGTATA
TGGAATAGATGTAGACAGAAAAGTGCTTGATTTAGGTTTTTTCTTTCTGGAGATTGTTGG
TTTCCCATAGAATTGCTAGTTAGGACATACAGTTACTTGCAGCATTAAGCTTTCTTCAAT
TCTTGGAAACCAAATTCTGTTATCTTTTTCCAGTGTAATAGTATTCTTGGACATGATTTT
CCCACTGGCTGTAAATAAATGAGTATTTCTCCTTTGTTCCCTATGTTTTCATCTTTTTTT
ATTTTCGGTTTCGATTTGTCTAAGACTCGATCTTGATGCTAGTACATACCGATCATCACG
ACCCTTTGTCCCAGC