Plant GARDEN
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TOP > About the Species(Solanum lycopersicum ) > genome data >Gene sequences

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SNP Detection
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Data List

All Markers Trait-Related Loci
Solanum lycopersicum

CDS Sequence

CDS ID

Solyc12g089000.2.1
CDS Infomation

RING/U-box superfamily protein (AHRD V3.3 *** AT4G34370.1)
Sequence

ATGGAGGATTATAGCTATGGGAGCAGCGATGATGATGAATGGGACAATCAACAGTGCAAT
AATGACGATGAAGACGATGATGATGGTGAATTTCTTGATGGGTTTACGGAAATTGAACAA
GAGAGAAACGGAATCTCTGGAAAGGGTCCTTCATGCAAGGTAATCAGGAAAGAGACTCTT
TTAGCTGCACAGAAAGAAGACTTGCAAAGAGTGATGGACTTGCTATCTCTGAAGGAACAT
CATGCTCGAAGCTTGCTTATTCATTACCGATGGGAAGTTGACAAGGTCTTTGCGGTTCTT
GTTGAGAGAGGGACAGAAATGTTATATGCTGAAGCGGGTGTGACACTGGAAGGGAAAGAG
GAACATACTTCCACTCTGTCGACATCTGAAGTGACGTGTCAAATTTGCTTCGAAGATGCC
CCTGTTGAGAAGACCACTGTAATGGACTGCAACCATATATTTTGCAATGAATGTTGGACA
ACTCATTTCATTGTAAAAATAAATGAGGGTCAGAGTAAACAAGTAACTTGCATGGCCCAA
AAGTGCAATGTGATCTGTGATGAAGGAAAGATTAGGGATCTCGTCACTGCAAGAGATCCT
GCTTTAGCAGAGAAATTTGATCGTTTTCTGTTAGAGTCATATATTGATGATAACAAGAGG
GTTAAATGGTGCCCTAGTGTTCCTCATTGTGGAAATGCAATTCGTATTGAGGATGATGAT
TACTGCTGTGAAGTTGAATGTGCATGTGGTGTACAGTTCTGTTTTAATTGTTTATCAGAA
GCGCACTCACCTTGTTCATGTCTGATGTGGAAACTTTGGATGAAGAAGTGCAAGAACGAT
GGGAAGACAGTAACGTGGATAAGTGAAAATGCCAAACATTGCCCAAACTGTCACAATGCC
GTGGAGAAGAATGGGGGATGCAACCTTGTAAGATGTAGATGTGGACAGCCGTTTTGTTGG
TTGTGCGGTGGAGCTACTGGCTTAGACCACACATGGAGTAGCATTCGAGGTCACACTTGT
GGCATTTATAAGGAAGGGGAAGAGGATAAGTCGACGACTGTCAGAAATGATCTCTTGCGC
TATACTCATTATTATGAGCGCTATATGGTTCATCGTGATTCGTTGGAGGCTGAAGCAAAC
ATGAAGCAAAAACTAAAGTTTGAAGTGTTGAAACTCGAAGCAAGGGAATTGCTATCAAAG
GACTTCAGCTGGGTAGAAAATGGATGTAATAGACTCCTTGAATTGAGGCGAATTCTCTCC
TGTTCCTATCCAGTTTCATTTTACGTTTTTGATCAGACGCTGTTCAAGGATGAAATGACA
CAAAAAGATAGGGAAATAAAGAAGAACCTTTTTGAAAACCTGCAGCAGCAACTTGAAATA
AACGTTGAGAGACTTTCGATGTTCTTGGAAGAACCATTTGCTAAATATCCTGAAGATAAA
CTTTTGGAGACTAGAACGAAGATCATCACTCTCTCCGTACTAACAGACAACCTCTGCAAA
GAGTTGTACGATTGCATTGACAACGATTTACTGCTTCCTCTACAGCAGGCGAATCATACC
ATAGCTCATTATAGATCCGAGGGAGTGGCGAAAGCATCAGAACTTCCTAATTGA

Peptide Sequence

PEP ID

Solyc12g089000.2.1
PEP Infomation

RING/U-box superfamily protein (AHRD V3.3 *** AT4G34370.1)
Sequence

MEDYSYGSSDDDEWDNQQCNNDDEDDDDGEFLDGFTEIEQERNGISGKGPSCKVIRKETL
LAAQKEDLQRVMDLLSLKEHHARSLLIHYRWEVDKVFAVLVERGTEMLYAEAGVTLEGKE
EHTSTLSTSEVTCQICFEDAPVEKTTVMDCNHIFCNECWTTHFIVKINEGQSKQVTCMAQ
KCNVICDEGKIRDLVTARDPALAEKFDRFLLESYIDDNKRVKWCPSVPHCGNAIRIEDDD
YCCEVECACGVQFCFNCLSEAHSPCSCLMWKLWMKKCKNDGKTVTWISENAKHCPNCHNA
VEKNGGCNLVRCRCGQPFCWLCGGATGLDHTWSSIRGHTCGIYKEGEEDKSTTVRNDLLR
YTHYYERYMVHRDSLEAEANMKQKLKFEVLKLEARELLSKDFSWVENGCNRLLELRRILS
CSYPVSFYVFDQTLFKDEMTQKDREIKKNLFENLQQQLEINVERLSMFLEEPFAKYPEDK
LLETRTKIITLSVLTDNLCKELYDCIDNDLLLPLQQANHTIAHYRSEGVAKASELPN*

Transcript Sequence

Transcript ID

Solyc12g089000.2.1
Transcript Infomation

RING/U-box superfamily protein (AHRD V3.3 *** AT4G34370.1)
Sequence

TTGACAGAATTTCACTCCGATCAAAACTCTCCAAAAAAAAATCCAAAAATCTTCCTTCCC
CACGAAGGAATTTCAAGAATCGACAAACCTAGGGATCATCAAAGCGTAAAATTGCTAACT
TTTTTGGGGTTTTTCGATTTTTCTCTGTGGGGGGTTTTAGTGTATGTGAAAAATTATGGA
GGATTATAGCTATGGGAGCAGCGATGATGATGAATGGGACAATCAACAGTGCAATAATGA
CGATGAAGACGATGATGATGGTGAATTTCTTGATGGGTTTACGGAAATTGAACAAGAGAG
AAACGGAATCTCTGGAAAGGGTCCTTCATGCAAGGTAATCAGGAAAGAGACTCTTTTAGC
TGCACAGAAAGAAGACTTGCAAAGAGTGATGGACTTGCTATCTCTGAAGGAACATCATGC
TCGAAGCTTGCTTATTCATTACCGATGGGAAGTTGACAAGGTCTTTGCGGTTCTTGTTGA
GAGAGGGACAGAAATGTTATATGCTGAAGCGGGTGTGACACTGGAAGGGAAAGAGGAACA
TACTTCCACTCTGTCGACATCTGAAGTGACGTGTCAAATTTGCTTCGAAGATGCCCCTGT
TGAGAAGACCACTGTAATGGACTGCAACCATATATTTTGCAATGAATGTTGGACAACTCA
TTTCATTGTAAAAATAAATGAGGGTCAGAGTAAACAAGTAACTTGCATGGCCCAAAAGTG
CAATGTGATCTGTGATGAAGGAAAGATTAGGGATCTCGTCACTGCAAGAGATCCTGCTTT
AGCAGAGAAATTTGATCGTTTTCTGTTAGAGTCATATATTGATGATAACAAGAGGGTTAA
ATGGTGCCCTAGTGTTCCTCATTGTGGAAATGCAATTCGTATTGAGGATGATGATTACTG
CTGTGAAGTTGAATGTGCATGTGGTGTACAGTTCTGTTTTAATTGTTTATCAGAAGCGCA
CTCACCTTGTTCATGTCTGATGTGGAAACTTTGGATGAAGAAGTGCAAGAACGATGGGAA
GACAGTAACGTGGATAAGTGAAAATGCCAAACATTGCCCAAACTGTCACAATGCCGTGGA
GAAGAATGGGGGATGCAACCTTGTAAGATGTAGATGTGGACAGCCGTTTTGTTGGTTGTG
CGGTGGAGCTACTGGCTTAGACCACACATGGAGTAGCATTCGAGGTCACACTTGTGGCAT
TTATAAGGAAGGGGAAGAGGATAAGTCGACGACTGTCAGAAATGATCTCTTGCGCTATAC
TCATTATTATGAGCGCTATATGGTTCATCGTGATTCGTTGGAGGCTGAAGCAAACATGAA
GCAAAAACTAAAGTTTGAAGTGTTGAAACTCGAAGCAAGGGAATTGCTATCAAAGGACTT
CAGCTGGGTAGAAAATGGATGTAATAGACTCCTTGAATTGAGGCGAATTCTCTCCTGTTC
CTATCCAGTTTCATTTTACGTTTTTGATCAGACGCTGTTCAAGGATGAAATGACACAAAA
AGATAGGGAAATAAAGAAGAACCTTTTTGAAAACCTGCAGCAGCAACTTGAAATAAACGT
TGAGAGACTTTCGATGTTCTTGGAAGAACCATTTGCTAAATATCCTGAAGATAAACTTTT
GGAGACTAGAACGAAGATCATCACTCTCTCCGTACTAACAGACAACCTCTGCAAAGAGTT
GTACGATTGCATTGACAACGATTTACTGCTTCCTCTACAGCAGGCGAATCATACCATAGC
TCATTATAGATCCGAGGGAGTGGCGAAAGCATCAGAACTTCCTAATTGACATTCCACCAA
CACTAGGCATGTGAGCACTCTCAATCAGAGGCAAGAAAAGATGCACATTCCTTTTCTCAT
GAGCTGATCTACAATTTTATGCTAGAGGGTTTGATTACTACAGCATCTAATATTCTTTTG
CTACACTTGATATGAATTTAGTCTAGATTCTTAACTACATATAGTTTGAGTTGAAGACAA
TGTATGAACATTGGTTTTCGTTTGGCCATATC