Plant GARDEN
How To ▶︎

JA

EN

TOP > About the Species(Solanum lycopersicum ) > genome data >Gene sequences

Search

By Species By Keywords Genes By Markers By Traits

Let’s Analyze!!

SNP Detection
(lang=JA only) Sequences Other Tools

Data List

All Markers Trait-Related Loci
Solanum lycopersicum

CDS Sequence

CDS ID

Solyc12g088370.2.1
CDS Infomation

Interferon-related developmental regulator family protein (AHRD V3.3 *** B9IBS1_POPTR)
Sequence

ATGGGAAAAAAGAGTTCGCAGCGAAAGAATGTTGTAATGTTGGATAATGATGACACAGAC
AGCGTGAGTTCATCGTCAACTTCTCGATCAGAGATGATTGTTTCAGGTGCAGAGGAGGTT
CATGTTGATAAGGAGACTTTGCTTGATCAATGTGTTGATGCACTCTATGAAAAAAGGGGA
TCAACAAGAGAGAAGGCCCTTGCGTCAATTATAGAAACCTTCAATAGCGACATACAACAT
GAGTTTGTTGAAAAGAAGTTTGCCACTTTGTTGCAACAATGTTTGAATTCCATTAAGAGG
GGCTCTTCCAAGGAGATAACTTTAGCATCTCATGTTCTTGGACTTCTGGCTTTAACTGCT
GGCCTGGGGGACAAAGCACATGAAATGTTGGAAGAATCAGTGTCTCCTATTACAGAGGCT
CTTAAATCTCGTTCTGACGCATCTAAGATATCTTCGCTACTGGAGTGTTTGGCCATTATC
ACTTTTGTTGGAGGCGAAGAACCTGAGGAAACAGAGAAGTCAATGCAATTGATGTGGCAA
GTCATTCATCCAAAAATTGGCCCTAATGTGGCTACTGCTAAACCTTCACCACCAATGATA
ACAGCAATGGTATCTGCTTGGTCTTTCCTACTTACTACTGTGGGTGGATCAGCACTAAAC
CCGAAAAGCTGGCAAGGGTCAATTTCCTACTTTTCAACTCTGCTGGACAAGGATGATAGA
GCTGTCCGCATTGCAGCTGGTGAAGCACTTGCTTTAATTTTTGAAGTGGGGAGTCTTGAA
AAGTTCTCTGTTGAAGATAAAGGATCTAGTGACAGCTCCACAGGCGAAGCAAACAAATCT
AAGGATATTTTACATATCCAGGGATTAAGGGCGAAGGTCCTGAATCAGGTGAGAAGTCTC
TCCGAAGAGGCTGGAGGCAAAGGGTCTGCCAAGAAGGACCTAAACAGTCAAAGAAATACA
TTTCGAGATATCTTGGAATTTCTTGAGGAAGGGTATACTCCAGAGAGCTCAATGAAGATT
GGCGGAGACTTACTTACCACAACTACTTGGTGTCAACAGATACAGTTAAATTTCCTAAAG
CACTTTCTTGGAGGAGGTTTTGTGAAACACATGCAGGAAAATGAGTTCCTTCATACTGTC
TTTGGTTTCACACCTAAGAAAAAAATGCTTTCTGGTATTGAGCATCGTATATCCGGAACT
GAAAAGAGGTTCTACAAGTCACCAAACTCGGTCGCTAACAAGGCCAGGACTCAATTTCGA
AACAAGCAAAGGATGTTAACCCAGGATAAGAATGTGGGCTACTACACGGCTGGAAATGAC
ATCTAA

Peptide Sequence

PEP ID

Solyc12g088370.2.1
PEP Infomation

Interferon-related developmental regulator family protein (AHRD V3.3 *** B9IBS1_POPTR)
Sequence

MGKKSSQRKNVVMLDNDDTDSVSSSSTSRSEMIVSGAEEVHVDKETLLDQCVDALYEKRG
STREKALASIIETFNSDIQHEFVEKKFATLLQQCLNSIKRGSSKEITLASHVLGLLALTA
GLGDKAHEMLEESVSPITEALKSRSDASKISSLLECLAIITFVGGEEPEETEKSMQLMWQ
VIHPKIGPNVATAKPSPPMITAMVSAWSFLLTTVGGSALNPKSWQGSISYFSTLLDKDDR
AVRIAAGEALALIFEVGSLEKFSVEDKGSSDSSTGEANKSKDILHIQGLRAKVLNQVRSL
SEEAGGKGSAKKDLNSQRNTFRDILEFLEEGYTPESSMKIGGDLLTTTTWCQQIQLNFLK
HFLGGGFVKHMQENEFLHTVFGFTPKKKMLSGIEHRISGTEKRFYKSPNSVANKARTQFR
NKQRMLTQDKNVGYYTAGNDI*

Transcript Sequence

Transcript ID

Solyc12g088370.2.1
Transcript Infomation

Interferon-related developmental regulator family protein (AHRD V3.3 *** B9IBS1_POPTR)
Sequence

GCATGTATGAAAGCTTTTCCAAAATTGGAACAAACATTATATATTTAGTAAGAAACACTT
TATAAAGTCTACTTTTTCTCAAAATGGAATAAATTTTAATTCGAGTGTCTAAATAAAATT
AAACGGTTTCCATCACTCCACATCATCACCCCCATACAATTCTCGAATATTCCAAAGCAA
TATACTAAAAATACCAATTTCTTCTCTCTTTTTTTTTTCCTAAAATAAAATTTTCATATT
CTTCAGTCTTCTCATATAAATACCAAAGCTTTTCTTGTCTGATTCTCCTTTTCTTCTTCA
ATTGCTCTGTAAAACAATCTCAGAAAACTTCAATTTTCAGTCCCTAAAGTTCTCTTTATG
GATACATTGGTCCTCCATTCAAACAAGTATAAAAGTTTCTGTGTTTTTCCAAATCAATTT
CTCCCCTTTGATTCTCATCGTTTGACTTTTAGTCAACTCTGTTTTTGCTTCTAACCCTTT
GTTACCTGAAGCTTTCGCCATGGGAAAAAAGAGTTCGCAGCGAAAGAATGTTGTAATGTT
GGATAATGATGACACAGACAGCGTGAGTTCATCGTCAACTTCTCGATCAGAGATGATTGT
TTCAGGTGCAGAGGAGGTTCATGTTGATAAGGAGACTTTGCTTGATCAATGTGTTGATGC
ACTCTATGAAAAAAGGGGATCAACAAGAGAGAAGGCCCTTGCGTCAATTATAGAAACCTT
CAATAGCGACATACAACATGAGTTTGTTGAAAAGAAGTTTGCCACTTTGTTGCAACAATG
TTTGAATTCCATTAAGAGGGGCTCTTCCAAGGAGATAACTTTAGCATCTCATGTTCTTGG
ACTTCTGGCTTTAACTGCTGGCCTGGGGGACAAAGCACATGAAATGTTGGAAGAATCAGT
GTCTCCTATTACAGAGGCTCTTAAATCTCGTTCTGACGCATCTAAGATATCTTCGCTACT
GGAGTGTTTGGCCATTATCACTTTTGTTGGAGGCGAAGAACCTGAGGAAACAGAGAAGTC
AATGCAATTGATGTGGCAAGTCATTCATCCAAAAATTGGCCCTAATGTGGCTACTGCTAA
ACCTTCACCACCAATGATAACAGCAATGGTATCTGCTTGGTCTTTCCTACTTACTACTGT
GGGTGGATCAGCACTAAACCCGAAAAGCTGGCAAGGGTCAATTTCCTACTTTTCAACTCT
GCTGGACAAGGATGATAGAGCTGTCCGCATTGCAGCTGGTGAAGCACTTGCTTTAATTTT
TGAAGTGGGGAGTCTTGAAAAGTTCTCTGTTGAAGATAAAGGATCTAGTGACAGCTCCAC
AGGCGAAGCAAACAAATCTAAGGATATTTTACATATCCAGGGATTAAGGGCGAAGGTCCT
GAATCAGGTGAGAAGTCTCTCCGAAGAGGCTGGAGGCAAAGGGTCTGCCAAGAAGGACCT
AAACAGTCAAAGAAATACATTTCGAGATATCTTGGAATTTCTTGAGGAAGGGTATACTCC
AGAGAGCTCAATGAAGATTGGCGGAGACTTACTTACCACAACTACTTGGTGTCAACAGAT
ACAGTTAAATTTCCTAAAGCACTTTCTTGGAGGAGGTTTTGTGAAACACATGCAGGAAAA
TGAGTTCCTTCATACTGTCTTTGGTTTCACACCTAAGAAAAAAATGCTTTCTGGTATTGA
GCATCGTATATCCGGAACTGAAAAGAGGTTCTACAAGTCACCAAACTCGGTCGCTAACAA
GGCCAGGACTCAATTTCGAAACAAGCAAAGGATGTTAACCCAGGATAAGAATGTGGGCTA
CTACACGGCTGGAAATGACATCTAAGGAAGTATTAGTCGCGCCAGAATCACGCGCTTCAC
CAGCTGAAACATATTAGGGCATTCGTTATCGTTCCCATAGCATGAATATTTTTTGTTGGC
ACAGTTGTATAAAGAGATGGTAAAAATACAGAATATTAGTTGGTTATAACATTTGGAGAT
GGTAAAAATTACAGAATGTTAGTTGGTTGTAACATTTGTTTTAGCAGATTTCTTGCTATA
TACAATTCATTTCAAGATAGCATATTATCTACTATACATCTTCAACTATTTTGTTTCTGT
GTGTATTTTTTCTTCTTCCTATGGTCCTACCTACACACTGTATAGGTAGAAAATATTATA
TGCG