Plant GARDEN
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TOP > About the Species(Solanum lycopersicum ) > genome data >Gene sequences

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SNP Detection
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Data List

All Markers Trait-Related Loci
Solanum lycopersicum

CDS Sequence

CDS ID

Solyc12g057040.2.1
CDS Infomation

cryptochrome 1b
Sequence

ATGTCAAGTGGTGGTTGTAGTATAGTATGGTTTAGGAGGGATCTGAGGCTTGAAGATAAT
CCAGCACTGGCTGCTGCAGTGAGAGCAGGATCAGTGATTGCTGTGTTTATATGGGCACCA
GAAGAAGAAGGATACTATTGCCCTGGAAGAGTGTCAAGATGGTGGATTAAGAAAAGTTTG
GCTCATCTTGATTCATCTTTGAAGAAACTTGGCACTTCACTCATTACAAAGAGATCTAAT
GATAGTGTTTCTTCTCTTCTTCAAGTTGTCAAATCTACCGGTGCAACTCGAGTTTTTTTC
AATCATTTATATGATCCAATATCACTTGTAAGGGATAATTGCGCAAAGGAAACCTTATCA
GCTGAAGGTGTATCTGTGTGTTCTTTCAATGCTGATTTGCTATATGAACCATGGGAAGTT
GTCGATGATGAAAGCCGTCCATTCAGCACATTTTCTGATTTTTGGGAAAAATGTCTTACC
ATGCCTTATGATCCTGAAGCTCCACTTCTTCCGCCTAAAAGGATAATATCTGGTGATGCA
TCAAGATGCCCTTCAGACAACTTGGTGTTTGAGAGTGAATTAGAGAAAGGAAGCAATGCA
CTTCTTGCTCGAGCGTGGTCTCCTGGTTGGAGCAATGCTGATAAGGCACTCACTACTTTC
ATTAATGGACCGTTGATTGAGTATTCCAAGAATCGTAGTAAAGCTGATAGTGCAACAACC
TCATTTCTGTCACCGTGTTTACATTTTGGTGAAGTCAGTGTTCGTAAGGTATTCCATCGT
ATTCGTACTAAACAAACACTCTGGGCTAATGAAGGAAACAAAGCAGGTGAAGAGAGTGTC
AACTTGTTCCTCAAGTCTATCGGCCTTAGGGAGTTCTCGAGATACATGAGCTTTTATCAT
CCTTACAGTCATGAAAGGCCATTGCTTGGTCAGTTGAAGTACTTCCCTTGGTTAGTAGAC
GAGGGTTATTTTAAGGCGTGGAGGCAAGGTAGAACAGGTTATCCTTTAGTTGATGCAGGT
ATGAGAGAACTTTGGGCCACTGGCTGGTTACATGATCGTATTCGAGTTGTTGTGTCTAGT
TTCTCTGTTAAGGTTCTGCAGCTTCCTTGGACATGGGGAATGAAGTATTTCTGGGACACA
CTGTTAGATGCAGATCTCGAGAGTGATGCTCTTGGTTGGCAATTTATTACCGGTACCCTA
CCTGATGGTTGTGAGTTCCTCGGAATTGATAATCCACAGTTTGAGGGATACAAGTTTGAT
CCAAATGGGGAATATGTTCGACGATGGCTTCCTGAACTTGCTAGGCTGCCCACAGAATGG
ATACACCACCCATGGGATGCACCAGAATCTGTACTTCAAGCTGCTGGAATTGAGCTTGGT
TCCAATTATCCTTTTCCTATCGTTGAAATCGTTGCAGCAAAAGAACGACTAGAAGAAGCG
TTGTCACAAATGTGGCAGCTTGAAGCAGCTGCAAGATCTGCTATTGAGAATGGAATGGAG
GAAGGACATGGAGACTCCACTGATGAGTTTGTCCCAATAGCTTTTCCTCAGGCTATGCAG
ATAGAAATGGAAGCTAATAATGTACCGGTCAGGAACAATAATCCTACAATTACTGCTCTA
CGACGTTATGGAGATCAGATTGTTCCTAGCATGTCATCTTCCTTTTTTAGGAATGAAGAC
GAAGAAACCTCTGTTGATATTAGAAATTCAGTTGTAGATAGTAGAGCAGAAGTTCCAATA
ATATCGATGTAA

Peptide Sequence

PEP ID

Solyc12g057040.2.1
PEP Infomation

cryptochrome 1b
Sequence

MSSGGCSIVWFRRDLRLEDNPALAAAVRAGSVIAVFIWAPEEEGYYCPGRVSRWWIKKSL
AHLDSSLKKLGTSLITKRSNDSVSSLLQVVKSTGATRVFFNHLYDPISLVRDNCAKETLS
AEGVSVCSFNADLLYEPWEVVDDESRPFSTFSDFWEKCLTMPYDPEAPLLPPKRIISGDA
SRCPSDNLVFESELEKGSNALLARAWSPGWSNADKALTTFINGPLIEYSKNRSKADSATT
SFLSPCLHFGEVSVRKVFHRIRTKQTLWANEGNKAGEESVNLFLKSIGLREFSRYMSFYH
PYSHERPLLGQLKYFPWLVDEGYFKAWRQGRTGYPLVDAGMRELWATGWLHDRIRVVVSS
FSVKVLQLPWTWGMKYFWDTLLDADLESDALGWQFITGTLPDGCEFLGIDNPQFEGYKFD
PNGEYVRRWLPELARLPTEWIHHPWDAPESVLQAAGIELGSNYPFPIVEIVAAKERLEEA
LSQMWQLEAAARSAIENGMEEGHGDSTDEFVPIAFPQAMQIEMEANNVPVRNNNPTITAL
RRYGDQIVPSMSSSFFRNEDEETSVDIRNSVVDSRAEVPIISM*

Transcript Sequence

Transcript ID

Solyc12g057040.2.1
Transcript Infomation

cryptochrome 1b
Sequence

TTTTTGTAACACATCCTATTCATTAGTGAAAGTTACATGTAAAGCAATAAAGGGATAAGA
CTAATCCTAGTTCACTGATGTCCAAGAAAGACACATTAGCATGGTGGTGTTAAAGATAGG
TGACACATTGTTGGTAATATTTTGAGGCAAAAAAAAATAAAATGTCAAGTGGTGGTTGTA
GTATAGTATGGTTTAGGAGGGATCTGAGGCTTGAAGATAATCCAGCACTGGCTGCTGCAG
TGAGAGCAGGATCAGTGATTGCTGTGTTTATATGGGCACCAGAAGAAGAAGGATACTATT
GCCCTGGAAGAGTGTCAAGATGGTGGATTAAGAAAAGTTTGGCTCATCTTGATTCATCTT
TGAAGAAACTTGGCACTTCACTCATTACAAAGAGATCTAATGATAGTGTTTCTTCTCTTC
TTCAAGTTGTCAAATCTACCGGTGCAACTCGAGTTTTTTTCAATCATTTATATGATCCAA
TATCACTTGTAAGGGATAATTGCGCAAAGGAAACCTTATCAGCTGAAGGTGTATCTGTGT
GTTCTTTCAATGCTGATTTGCTATATGAACCATGGGAAGTTGTCGATGATGAAAGCCGTC
CATTCAGCACATTTTCTGATTTTTGGGAAAAATGTCTTACCATGCCTTATGATCCTGAAG
CTCCACTTCTTCCGCCTAAAAGGATAATATCTGGTGATGCATCAAGATGCCCTTCAGACA
ACTTGGTGTTTGAGAGTGAATTAGAGAAAGGAAGCAATGCACTTCTTGCTCGAGCGTGGT
CTCCTGGTTGGAGCAATGCTGATAAGGCACTCACTACTTTCATTAATGGACCGTTGATTG
AGTATTCCAAGAATCGTAGTAAAGCTGATAGTGCAACAACCTCATTTCTGTCACCGTGTT
TACATTTTGGTGAAGTCAGTGTTCGTAAGGTATTCCATCGTATTCGTACTAAACAAACAC
TCTGGGCTAATGAAGGAAACAAAGCAGGTGAAGAGAGTGTCAACTTGTTCCTCAAGTCTA
TCGGCCTTAGGGAGTTCTCGAGATACATGAGCTTTTATCATCCTTACAGTCATGAAAGGC
CATTGCTTGGTCAGTTGAAGTACTTCCCTTGGTTAGTAGACGAGGGTTATTTTAAGGCGT
GGAGGCAAGGTAGAACAGGTTATCCTTTAGTTGATGCAGGTATGAGAGAACTTTGGGCCA
CTGGCTGGTTACATGATCGTATTCGAGTTGTTGTGTCTAGTTTCTCTGTTAAGGTTCTGC
AGCTTCCTTGGACATGGGGAATGAAGTATTTCTGGGACACACTGTTAGATGCAGATCTCG
AGAGTGATGCTCTTGGTTGGCAATTTATTACCGGTACCCTACCTGATGGTTGTGAGTTCC
TCGGAATTGATAATCCACAGTTTGAGGGATACAAGTTTGATCCAAATGGGGAATATGTTC
GACGATGGCTTCCTGAACTTGCTAGGCTGCCCACAGAATGGATACACCACCCATGGGATG
CACCAGAATCTGTACTTCAAGCTGCTGGAATTGAGCTTGGTTCCAATTATCCTTTTCCTA
TCGTTGAAATCGTTGCAGCAAAAGAACGACTAGAAGAAGCGTTGTCACAAATGTGGCAGC
TTGAAGCAGCTGCAAGATCTGCTATTGAGAATGGAATGGAGGAAGGACATGGAGACTCCA
CTGATGAGTTTGTCCCAATAGCTTTTCCTCAGGCTATGCAGATAGAAATGGAAGCTAATA
ATGTACCGGTCAGGAACAATAATCCTACAATTACTGCTCTACGACGTTATGGAGATCAGA
TTGTTCCTAGCATGTCATCTTCCTTTTTTAGGAATGAAGACGAAGAAACCTCTGTTGATA
TTAGAAATTCAGTTGTAGATAGTAGAGCAGAAGTTCCAATAATATCGATGTAATGCAAGA
ACTATGGAATACGTACACTTGACCAAGCAGGAACTCCGAAGATCAAAATATCACATTTAT
ATACAGATATGATGCCTCTACTTCTCTGTACCAGACATTAGTTGAGACGATACGTAGTAG
TTATGATTTTAGTTCCAGAGGATGTCGAAGCCTCATGGAACTTTCTTAACCTGTGTGTGA
TATGCACTTGCTACAGGTGTATCGTTGTGGCCAGCATTTGGAG