Plant GARDEN
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TOP > About the Species(Solanum lycopersicum ) > genome data >Gene sequences

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SNP Detection
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Data List

All Markers Trait-Related Loci
Solanum lycopersicum

CDS Sequence

CDS ID

Solyc12g056600.3.1
CDS Infomation

short-chain dehydrogenase-reductase,Pfam:PF13561
Sequence

ATGGCCACCCCTTCTCTTCAATCCCCAATAGCCAAAAAGCTAGAAGGTAAGATAGCAATT
ATAACTGGTGGTGCTAGTGGCATAGGACTAGCTACAGCTAGACTTTTTATTCAACATGGT
GCAAAAGTAACAATTGCAGATATTCAGGACGACCTTGTAAATTCATTAGTAAAAGAAAAT
GAACACCTAATGTTCGTCCATTGTGATGTCGCGATTGAATCAGACGTTCAAAATGTGGTT
GATGCAACGGTTGCCAAATTTGGTAAGCTTGACATAATGTTCAGTAACGCTGGTGTAGCT
GGTAAGTCGATTTCCAGTATTTTAGACGTAGATACCGATATAATTAAAAACGTGTTCGAT
GTAAATGTCGTTGGGGCATTTTTATGCGCGAAACATGCTGCTAGAGTGATGATTTCGAGT
CATACAAAAGGTTCAATTATTTTCACGACAAGTGCGGCAACGGTAGTATATGGTATCGTC
CCACATTCTTATGCGGCATCAAAAAGTGCGGTTTTAGGGCTCTGTAAAAACATCGGAGTC
GAATTAGGAAGATACGGAATAAAAGTTAATTGCGTTTCTCCTCATTATATAAGCACAAAA
CTTGCGTTGGACGCGCTCGGAATAGACGAGAGAGAAAAGGCAGAGAGATGGTTTGGTGAA
GGGGGGAATTTGAAAGGAGTTTTATTGGAGGAACAAGATGTAGCAAATGGAGTGTTGTAT
TTGGCAAGCGATGATTCCAAATATGTGAGTGGTTTGAATTTAGTTATTGATGGTGGTTAT
AGTACTACAAATGTGGCTTTGGGTGAGGCCTACAAGAAATTGTTCCCTTCTGGTACAACC
AATCAAGTTATGCAGATTCTTATTTAA

Peptide Sequence

PEP ID

Solyc12g056600.3.1
PEP Infomation

short-chain dehydrogenase-reductase,Pfam:PF13561
Sequence

MATPSLQSPIAKKLEGKIAIITGGASGIGLATARLFIQHGAKVTIADIQDDLVNSLVKEN
EHLMFVHCDVAIESDVQNVVDATVAKFGKLDIMFSNAGVAGKSISSILDVDTDIIKNVFD
VNVVGAFLCAKHAARVMISSHTKGSIIFTTSAATVVYGIVPHSYAASKSAVLGLCKNIGV
ELGRYGIKVNCVSPHYISTKLALDALGIDEREKAERWFGEGGNLKGVLLEEQDVANGVLY
LASDDSKYVSGLNLVIDGGYSTTNVALGEAYKKLFPSGTTNQVMQILI*

Transcript Sequence

Transcript ID

Solyc12g056600.3.1
Transcript Infomation

short-chain dehydrogenase-reductase,Pfam:PF13561
Sequence

TCTCTTATAAATAGAGTCTAAATATTTTTTACAAGAACTCATTAACTCTCAAGTTTGACA
AAATGGCCACCCCTTCTCTTCAATCCCCAATAGCCAAAAAGCTAGAAGGTAAGATAGCAA
TTATAACTGGTGGTGCTAGTGGCATAGGACTAGCTACAGCTAGACTTTTTATTCAACATG
GTGCAAAAGTAACAATTGCAGATATTCAGGACGACCTTGTAAATTCATTAGTAAAAGAAA
ATGAACACCTAATGTTCGTCCATTGTGATGTCGCGATTGAATCAGACGTTCAAAATGTGG
TTGATGCAACGGTTGCCAAATTTGGTAAGCTTGACATAATGTTCAGTAACGCTGGTGTAG
CTGGTAAGTCGATTTCCAGTATTTTAGACGTAGATACCGATATAATTAAAAACGTGTTCG
ATGTAAATGTCGTTGGGGCATTTTTATGCGCGAAACATGCTGCTAGAGTGATGATTTCGA
GTCATACAAAAGGTTCAATTATTTTCACGACAAGTGCGGCAACGGTAGTATATGGTATCG
TCCCACATTCTTATGCGGCATCAAAAAGTGCGGTTTTAGGGCTCTGTAAAAACATCGGAG
TCGAATTAGGAAGATACGGAATAAAAGTTAATTGCGTTTCTCCTCATTATATAAGCACAA
AACTTGCGTTGGACGCGCTCGGAATAGACGAGAGAGAAAAGGCAGAGAGATGGTTTGGTG
AAGGGGGGAATTTGAAAGGAGTTTTATTGGAGGAACAAGATGTAGCAAATGGAGTGTTGT
ATTTGGCAAGCGATGATTCCAAATATGTGAGTGGTTTGAATTTAGTTATTGATGGTGGTT
ATAGTACTACAAATGTGGCTTTGGGTGAGGCCTACAAGAAATTGTTCCCTTCTGGTACAA
CCAATCAAGTTATGCAGATTCTTATTTAAATTTGTGAGACATTTAATCTGGTCCGTTTTG
TATTGTTTTCTAGCCTTATAATTGTCACTGTCTTACTTTATGTACACGCTCTTTTCTTTT
TTCAATTCTAATAATTATCATTGTTTTTATAATGTACTCGATTTGGAGTATTACATTACC
GTTGAATAATTTTCTTAAACTCCATTGGCTTCATTAAT