Plant GARDEN
How To ▶︎

JA

EN

TOP > About the Species(Solanum lycopersicum ) > genome data >Gene sequences

Search

By Species By Keywords Genes By Markers By Traits

Let’s Analyze!!

SNP Detection
(lang=JA only) Sequences Other Tools

Data List

All Markers Trait-Related Loci
Solanum lycopersicum

CDS Sequence

CDS ID

Solyc12g056490.1.1
CDS Infomation

WD40 repeat-containing protein (AHRD V3.3 *** A0A103XFY3_CYNCS)
Sequence

ATGGAGAATCCAAGCTCGAATTCCATGGAACCTCAAACACCCTTTGATCCCAATTCCAAT
ATGAACCCCAAAACTCCATCAAAGACTAATTTAATCCCGGGTTTCAATTCATACCATCCT
TCCCCTTCACGTTCAATTTACAGTGACCGTTTCATACCCAGCAGAACTTCATCTAATTTT
GCGCTTTTTGGGTTGCCATTGTCGCCTAAGTCTTCTAATACGGAGGATTCTAATAGTGGG
TATACTTCTCTTCTACGTACTGCGTTGTTTGGCCCTGATTCGGGGAATGTAGTGAATCCT
GTCACACCGGAGAAGGGTGTTCGTGGGAATGGGAGGAATTTGAAGAGACCCAATTGTAAT
ATTTTTAGGTATAAAACGGAGACAAGACAAAGGTTGGATTCTTTGTTGCCTTATGAGTTT
GATGACCAGATGCGTGGTGTTAGTACTAGTCCTGTTAAGGTTCCCCGTAAAGTTCCGAAA
TCGCCTTATAAGGTACTGGATGCCCCTGCATTGCAAGACGACTTTTATCTAAATCTTGTG
GACTGGTCGTCACAGAATGTGTTAGCTGTGGGATTGGGGAGCTCTGTATATTTATGGCAT
GCATCTAATGGCAAGGTAGTGAAGTTGTGCGACTTGGAAAATGATGATAATGTTACTTCA
GTTGGCTGGGCACAGCGAGGTACACATCTTGCTGTTGGAACAAGTAATGGGAAAGTTCAG
TTATGGGATGCCTCTCATGGTAAGATGACAAGAACAATGGAGGGACATCGTTTAAGAGTT
GGTGCGTTATCTTGGAGCTCCTCCCAGTTGTCTTCAGGAAGTCGGGACAAGAGTATTCTT
CAGCGTGACATACGAGCTCAAGATGATTATGTCAGTAAGCTAAGTGGTCACAAGTCAGAG
GTTTGTGGGCTCAAATGGTCTCCGGATAGCCGTGAATTAGCTTCTGGTGGAAATGATAAC
AGACTTTTCGTATGGAACAACCATTCAACACAACCTATATTGAAATACTGTGAGCATACT
GCTGCTGTAAAGGCGATTGCATGGTCCCCCCATCTTCACGGACTTCTAGCTTCTGGTGGT
GGCACAGCTGATCGATGCATTCGATTCTGGAACACAACCACTAATACACACCTCAGCTGC
ATGGACACTGGCAGTCAGGTTTGCAATCTTGTGTGGTCGAAGAACGCAAATGAATTAGTC
AGCACTCATGGTTACTCGCAAAATCAAATAATACTTTGGAGGTATCCTACAATGACCAAG
GTAGCTACTCTGACTGGCCATACATATAGAGTCTTATATCTTGCCATATCTCCAGATGGA
CAGATGATTGTGACCGGAGCAGGAGATGAAACACTTCGGTTCTGGAATGTCTTCCCTTCT
CCTAAATCTCAGAACACCGAGTCTGAAATTGGGGCATCTTCTCTCGGCAGAACACAGATT
AGGTGA

Peptide Sequence

PEP ID

Solyc12g056490.1.1
PEP Infomation

WD40 repeat-containing protein (AHRD V3.3 *** A0A103XFY3_CYNCS)
Sequence

MENPSSNSMEPQTPFDPNSNMNPKTPSKTNLIPGFNSYHPSPSRSIYSDRFIPSRTSSNF
ALFGLPLSPKSSNTEDSNSGYTSLLRTALFGPDSGNVVNPVTPEKGVRGNGRNLKRPNCN
IFRYKTETRQRLDSLLPYEFDDQMRGVSTSPVKVPRKVPKSPYKVLDAPALQDDFYLNLV
DWSSQNVLAVGLGSSVYLWHASNGKVVKLCDLENDDNVTSVGWAQRGTHLAVGTSNGKVQ
LWDASHGKMTRTMEGHRLRVGALSWSSSQLSSGSRDKSILQRDIRAQDDYVSKLSGHKSE
VCGLKWSPDSRELASGGNDNRLFVWNNHSTQPILKYCEHTAAVKAIAWSPHLHGLLASGG
GTADRCIRFWNTTTNTHLSCMDTGSQVCNLVWSKNANELVSTHGYSQNQIILWRYPTMTK
VATLTGHTYRVLYLAISPDGQMIVTGAGDETLRFWNVFPSPKSQNTESEIGASSLGRTQI
R*

Transcript Sequence

Transcript ID

Solyc12g056490.1.1
Transcript Infomation

WD40 repeat-containing protein (AHRD V3.3 *** A0A103XFY3_CYNCS)
Sequence

ATGGAGAATCCAAGCTCGAATTCCATGGAACCTCAAACACCCTTTGATCCCAATTCCAAT
ATGAACCCCAAAACTCCATCAAAGACTAATTTAATCCCGGGTTTCAATTCATACCATCCT
TCCCCTTCACGTTCAATTTACAGTGACCGTTTCATACCCAGCAGAACTTCATCTAATTTT
GCGCTTTTTGGGTTGCCATTGTCGCCTAAGTCTTCTAATACGGAGGATTCTAATAGTGGG
TATACTTCTCTTCTACGTACTGCGTTGTTTGGCCCTGATTCGGGGAATGTAGTGAATCCT
GTCACACCGGAGAAGGGTGTTCGTGGGAATGGGAGGAATTTGAAGAGACCCAATTGTAAT
ATTTTTAGGTATAAAACGGAGACAAGACAAAGGTTGGATTCTTTGTTGCCTTATGAGTTT
GATGACCAGATGCGTGGTGTTAGTACTAGTCCTGTTAAGGTTCCCCGTAAAGTTCCGAAA
TCGCCTTATAAGGTACTGGATGCCCCTGCATTGCAAGACGACTTTTATCTAAATCTTGTG
GACTGGTCGTCACAGAATGTGTTAGCTGTGGGATTGGGGAGCTCTGTATATTTATGGCAT
GCATCTAATGGCAAGGTAGTGAAGTTGTGCGACTTGGAAAATGATGATAATGTTACTTCA
GTTGGCTGGGCACAGCGAGGTACACATCTTGCTGTTGGAACAAGTAATGGGAAAGTTCAG
TTATGGGATGCCTCTCATGGTAAGATGACAAGAACAATGGAGGGACATCGTTTAAGAGTT
GGTGCGTTATCTTGGAGCTCCTCCCAGTTGTCTTCAGGAAGTCGGGACAAGAGTATTCTT
CAGCGTGACATACGAGCTCAAGATGATTATGTCAGTAAGCTAAGTGGTCACAAGTCAGAG
GTTTGTGGGCTCAAATGGTCTCCGGATAGCCGTGAATTAGCTTCTGGTGGAAATGATAAC
AGACTTTTCGTATGGAACAACCATTCAACACAACCTATATTGAAATACTGTGAGCATACT
GCTGCTGTAAAGGCGATTGCATGGTCCCCCCATCTTCACGGACTTCTAGCTTCTGGTGGT
GGCACAGCTGATCGATGCATTCGATTCTGGAACACAACCACTAATACACACCTCAGCTGC
ATGGACACTGGCAGTCAGGTTTGCAATCTTGTGTGGTCGAAGAACGCAAATGAATTAGTC
AGCACTCATGGTTACTCGCAAAATCAAATAATACTTTGGAGGTATCCTACAATGACCAAG
GTAGCTACTCTGACTGGCCATACATATAGAGTCTTATATCTTGCCATATCTCCAGATGGA
CAGATGATTGTGACCGGAGCAGGAGATGAAACACTTCGGTTCTGGAATGTCTTCCCTTCT
CCTAAATCTCAGAACACCGAGTCTGAAATTGGGGCATCTTCTCTCGGCAGAACACAGATT
AGGTGA