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TOP > About the Species(Solanum lycopersicum ) > genome data >Gene sequences

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SNP Detection
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Data List

All Markers Trait-Related Loci
Solanum lycopersicum

CDS Sequence

CDS ID

Solyc12g056400.2.1
CDS Infomation

RING/U-box superfamily protein (AHRD V3.3 *** AT3G61180.1)
Sequence

ATGTTTTTACCAAGTCCATCGAGTTCACCATTATTAAGATCAAGCAATGACGGATTGTCT
CTTTTTCGATCGACGAATCGTTACAGTGTTCGTGAAACGATTAGATTTATGCAAAGAGCT
AGCAATCGAAGGGCATTGATGATGCATGAACCGTCCGAGCAAATTGATGATCGACAGAGT
AATTGGGCATATTCAAAACCTGTTGTGATTATTGATCTATTGTGGAATTTCATGTATATT
ATTGCTGCTGTTGTGGTTTTGGTGTTGAGTAGAAATGAAAAATTGGAAATGCCTTTAAGG
GTTTGGATTATTGGGTATTGTTTTCTTTGTATGATTCATGTTGTTAGTGTTTATTTGGAG
TTTCAGAGAAGAGGTTATGGGCAATCGTTGTTTACTGGAGATGGGGTTTTGAGACCTACT
GTAGATTCGAGTTATATTACTTTGGCTGATTTAACCCCGGATAGAACAAGTGATTTTAGT
TATAATGCTGGTGTGTATAACATTTTTGTTTTCGGGAAAAAATGGTACAGTAATGTGACG
AAGTATATGGATACTGCAAATACATTGATATCGTCATTCTGGTGGGTCATTGGATTTTAT
TGGGTATGTGCTGGTGGTCAGCGAATTGTGGATGAATCCCCTCAATTGTACTGGCTTTGC
ATTGTTTTCTTGGCTTTTGATGTATTCTTTGTGATCTTCTTACTTGTGCTGGCTTGTGCT
ATTGGTCTCGGAATTTGCTGTTGCTTTCCATGTATTATTGCTGTTCTATACATTGTAGCT
GATAAGAAAGGAGCAACCAAAGAAGACGTTGAAAAACTGTCAAAGTACATATTCCAACGC
AATGATTTTACTGAGAAGAAATGTACTAGTGAGAACCAAGGAATTGCTGGATTCATGACC
CTGTGTGGGGGGAATACACCAACAGATGAACACGCAGTTTCCATAGATGATTCTGAATGT
TCCATATGTCTGTCTACTTATGATGATGGAGATGAACTCCGAGAACTTCCCTGTGGTCAC
CTTTTTCACTGTCCTTGTATCGACAAATGGCTATATATGAGCGCGACCTGCCCTCTTTGC
AAACGCAACGTCTTTGGGGCCAGCAGTTGCTGTGGAAGAGTTTAG

Peptide Sequence

PEP ID

Solyc12g056400.2.1
PEP Infomation

RING/U-box superfamily protein (AHRD V3.3 *** AT3G61180.1)
Sequence

MFLPSPSSSPLLRSSNDGLSLFRSTNRYSVRETIRFMQRASNRRALMMHEPSEQIDDRQS
NWAYSKPVVIIDLLWNFMYIIAAVVVLVLSRNEKLEMPLRVWIIGYCFLCMIHVVSVYLE
FQRRGYGQSLFTGDGVLRPTVDSSYITLADLTPDRTSDFSYNAGVYNIFVFGKKWYSNVT
KYMDTANTLISSFWWVIGFYWVCAGGQRIVDESPQLYWLCIVFLAFDVFFVIFLLVLACA
IGLGICCCFPCIIAVLYIVADKKGATKEDVEKLSKYIFQRNDFTEKKCTSENQGIAGFMT
LCGGNTPTDEHAVSIDDSECSICLSTYDDGDELRELPCGHLFHCPCIDKWLYMSATCPLC
KRNVFGASSCCGRV*

Transcript Sequence

Transcript ID

Solyc12g056400.2.1
Transcript Infomation

RING/U-box superfamily protein (AHRD V3.3 *** AT3G61180.1)
Sequence

TTTTCATAAACCATATCCAATTATTTGGTCCCTTTGAACATTTTGCTTCTTCTTAACAAT
TATACAAAAATAAATAAATAAATTATTATTATTGATTCAACAATATTTCTCTCAAATCAT
ATGAAAAAATATGTTTTTACCAAGTCCATCGAGTTCACCATTATTAAGATCAAGCAATGA
CGGATTGTCTCTTTTTCGATCGACGAATCGTTACAGTGTTCGTGAAACGATTAGATTTAT
GCAAAGAGCTAGCAATCGAAGGGCATTGATGATGCATGAACCGTCCGAGCAAATTGATGA
TCGACAGAGTAATTGGGCATATTCAAAACCTGTTGTGATTATTGATCTATTGTGGAATTT
CATGTATATTATTGCTGCTGTTGTGGTTTTGGTGTTGAGTAGAAATGAAAAATTGGAAAT
GCCTTTAAGGGTTTGGATTATTGGGTATTGTTTTCTTTGTATGATTCATGTTGTTAGTGT
TTATTTGGAGTTTCAGAGAAGAGGTTATGGGCAATCGTTGTTTACTGGAGATGGGGTTTT
GAGACCTACTGTAGATTCGAGTTATATTACTTTGGCTGATTTAACCCCGGATAGAACAAG
TGATTTTAGTTATAATGCTGGTGTGTATAACATTTTTGTTTTCGGGAAAAAATGGTACAG
TAATGTGACGAAGTATATGGATACTGCAAATACATTGATATCGTCATTCTGGTGGGTCAT
TGGATTTTATTGGGTATGTGCTGGTGGTCAGCGAATTGTGGATGAATCCCCTCAATTGTA
CTGGCTTTGCATTGTTTTCTTGGCTTTTGATGTATTCTTTGTGATCTTCTTACTTGTGCT
GGCTTGTGCTATTGGTCTCGGAATTTGCTGTTGCTTTCCATGTATTATTGCTGTTCTATA
CATTGTAGCTGATAAGAAAGGAGCAACCAAAGAAGACGTTGAAAAACTGTCAAAGTACAT
ATTCCAACGCAATGATTTTACTGAGAAGAAATGTACTAGTGAGAACCAAGGAATTGCTGG
ATTCATGACCCTGTGTGGGGGGAATACACCAACAGATGAACACGCAGTTTCCATAGATGA
TTCTGAATGTTCCATATGTCTGTCTACTTATGATGATGGAGATGAACTCCGAGAACTTCC
CTGTGGTCACCTTTTTCACTGTCCTTGTATCGACAAATGGCTATATATGAGCGCGACCTG
CCCTCTTTGCAAACGCAACGTCTTTGGGGCCAGCAGTTGCTGTGGAAGAGTTTAGGAGAG
TGTCTTCGACAAGACATTAGGTGTTCGTTGCGAGTTTGTACATACAACTCTTTATAGCAT
ATGTTTAGACACACACATATGCTTCTGCTGGATAAATACACATATTTCTCTAGGCTTATG
TCATTTGTCTCACTGGATATTCATATTTATTTTTATTCTTTTATTCTATTTGTTTGTAAT
AAGGATCTATGATTTTTTGTTATCTTCCAGTGTAGCAAAAAGAGCCAGATGTAGTGTATT
TAATAAAGTGGTATATTGTGTATAAATCTAGTGCATAGATCAACTTTGAGGCTTGAAGTT
ATTAATATTCATTGGAAA