Plant GARDEN
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Data List

All Markers Trait-Related Loci
Solanum lycopersicum

CDS Sequence

CDS ID

Solyc12g056340.2.1
CDS Infomation

RNA helicase DEAD38
Sequence

ATGGGCGGCGGTCCCCGTACTTTCCCCGGCGGTCTCAACAAATGGCAATGGAAGCGCCTC
CACGAGAAGAAAGCTCGGGACAAGGAAAACCGGCTCCTTGATCAAGAGAAACAGCTTTAT
CAGGCTCGAATCCGATCTCAAATCCGAGCTAAACTCACTTCTTCCGGTGAACAATCCGAT
TTTAGCAATGAACAACAGCCTAATTATAGCCCTGTTTCACCACAAGACCATATTAGAGGT
CTAGCTGATCGGTTCATGAAGGAAGGTGCTGAGGATTTGTGGAATGAAGATGATGGACCG
GTTAATACTCCACAGATAAATCAACAAAGCGGAGGTATTAGTGAGTCAATTGATTTGCGC
AAATTGAGAGATACTAAGTTTAATGATGTTCCTCGAAGTTATAGTTTTCAGAAAGCTAGA
AATTTTTGTACGAATATTAGTGATGTTTTCGCTGAAAATTGTAGAACTAGAAATCCAACT
TTTTCGGATAGTTGGTCAAGACAGAACAAGTTTTTAATGTTTGGATGGAGGTTGGTTAAT
ATTGAGAATAGAAATGTGAATAATTTGAATGGATTTTTGAATTATAGATGCTACTCAGTA
GATAGGATGAATGGGAATAAGTTGAGGAAATTGGATTTTACTAGAAATGAGAGTTCGCAA
AGTGAGGATAAATTGAGATCAGTGGGATTGGTGGTGAAGGGTGAGCGAAAAGCAAAATGG
CCGAGGTTTAGACCGAAACCTGAGGAGTCAACTGATGAAGACGATGACGAAGATACTGAG
GTGGATGAGGACGAGGAGGAAAGACGGAGTAGAGGGAGTGTGAAGATGATGAGTAGTGCT
GCTCTAGGGAAGTATGATATGAAGACAAAGAAGAGAGTTCCATTGAAGTTTGTGGAAGAT
GAAGATGATTTATCACTGCATGTCGCGGCGATAAGGAAGGAGGTTAAAGGGCGGAGTATG
CAGAAAATTGAAACCGAAGAAGACGAGAAGGAAACAATACTTAGCTCTAAAAGGTTTGAT
GAATATGATGTATCTCCTTTGACAGTCAAGGCCCTTACTGCAGCAGGTTATGTGCAAATG
ACTAAAGTGCAAGAGGCAACACTTTCTACTTGTCTTGAGGGAAAGGATGCTTTAGTTAAA
GCAAGGACAGGCACAGGCAAAAGTGCTGCATTTTTGCTTCCAGCCATTGAAACAGTTCTG
AAGGCCTCACGTAAAAAGAGTGCCCAAAGGGTCCCGCCAATAGATGTACTCATTCTCTGT
CCCACGCGAGAACTTGCTAGTCAGATAGCTGCTGAAGCTAATGTGTTGTTAAAGTACCAT
GAAGGCATTGGTGTGCAGACACTAGTTGGAGGGACAAGGTTCAAAGAAGATCAGAAACGC
CTAGAGTGTGATCCATGCCAGATTATAGTTGCAACACCTGGTAGATTATTAGATCACATT
GAGAACAAGTCTGGCTTCTCTACACGAATAATGGGATTGAAGATGTTAATACTTGATGAA
GCTGACCACTTACTGGACCTTGGGTTCCGGAAAGACATAGAGAAACTTGTTGATTGCTTG
CCTCGACGAAGGCAGTCCCTACTCTTTTCAGCTACTGTCCCAAAGGAGGTTCGTCGCATA
TCTCAACTTGTTCTGAAAAGAGAATATGACTATGTTGATACAGTGGGCCTTGGACTGGAA
ACAAATCCAAAGGTTAAGCAATTTTATCTAGTTGCACCGCATGAACAACACTTTCAAGTT
GTGCACCATCTTTTGTCAAGCCATATCTCAGAAGTGCCTGATTACAAGGTCATTGTTTTT
TGTACAACAGCTATGATGACATCCCTCATGTTTTCCCTTTTCCATGAGATGAAAATGAAT
GTGAGAGAGATCCATTCCAGAAAACCTCAACTTTATCGTACTCGAATCTCTGATGAATTC
AAGGAAACGAAACGTGTAATTCTTATAACCTCTGATGTGTCAGCTCGGGGGATGAATTAT
CCTGATGTTACACTTGTTATTCAGGTTGGTCTTCCTGTTGATCGAGAGCAGTATATACAC
CGGCTTGGAAGAACTGGGCGAGAAGGCAAAGAAGGAGAAGGTATCCTGTTGCTTGCACCT
TGGGAACAATATTTCTTGGATGACATAAAAGACCTCCCCATGGAAAACTGGCCAGTTCCA
CGTCTTGATCCTCGTGTTAAAGTCAAGATGGAAGAAGCAATGGAAAAGATGGATACTAGT
GTCAAAGAATCAGCTTATCACGCTTGGCTTGGTTATTACAACTCGGTAAGGGAAGTAGGC
AGAGACAAGACAACACTTGTCGAGTTAGCTAACCAGTTTAGCGAGTCTATTGGTTTGGAC
AAGCCTCCTTCACTGTTCCGTAGAACAGCTCTAAAGATGGGATTGAAAGATATTCCTGGC
ATCCGAATACGTAAGTAG

Peptide Sequence

PEP ID

Solyc12g056340.2.1
PEP Infomation

RNA helicase DEAD38
Sequence

MGGGPRTFPGGLNKWQWKRLHEKKARDKENRLLDQEKQLYQARIRSQIRAKLTSSGEQSD
FSNEQQPNYSPVSPQDHIRGLADRFMKEGAEDLWNEDDGPVNTPQINQQSGGISESIDLR
KLRDTKFNDVPRSYSFQKARNFCTNISDVFAENCRTRNPTFSDSWSRQNKFLMFGWRLVN
IENRNVNNLNGFLNYRCYSVDRMNGNKLRKLDFTRNESSQSEDKLRSVGLVVKGERKAKW
PRFRPKPEESTDEDDDEDTEVDEDEEERRSRGSVKMMSSAALGKYDMKTKKRVPLKFVED
EDDLSLHVAAIRKEVKGRSMQKIETEEDEKETILSSKRFDEYDVSPLTVKALTAAGYVQM
TKVQEATLSTCLEGKDALVKARTGTGKSAAFLLPAIETVLKASRKKSAQRVPPIDVLILC
PTRELASQIAAEANVLLKYHEGIGVQTLVGGTRFKEDQKRLECDPCQIIVATPGRLLDHI
ENKSGFSTRIMGLKMLILDEADHLLDLGFRKDIEKLVDCLPRRRQSLLFSATVPKEVRRI
SQLVLKREYDYVDTVGLGLETNPKVKQFYLVAPHEQHFQVVHHLLSSHISEVPDYKVIVF
CTTAMMTSLMFSLFHEMKMNVREIHSRKPQLYRTRISDEFKETKRVILITSDVSARGMNY
PDVTLVIQVGLPVDREQYIHRLGRTGREGKEGEGILLLAPWEQYFLDDIKDLPMENWPVP
RLDPRVKVKMEEAMEKMDTSVKESAYHAWLGYYNSVREVGRDKTTLVELANQFSESIGLD
KPPSLFRRTALKMGLKDIPGIRIRK*

Transcript Sequence

Transcript ID

Solyc12g056340.2.1
Transcript Infomation

RNA helicase DEAD38
Sequence

AAAATAATAAATAAATTAAGGGTGTCAATGTAATTATATCAAAAGTAAGGGGTCAATGTA
CAAATCCTCCGTAATGCTTAAACCCTAACTAAAACCCAAAATCCCCAATTCTCTATCACC
ATTTCCTTCTTCATCAAAAAGCTTTCAAATTTCTTTATCACAGTTTCACTATTTTCCGTT
CAATGGGCGGCGGTCCCCGTACTTTCCCCGGCGGTCTCAACAAATGGCAATGGAAGCGCC
TCCACGAGAAGAAAGCTCGGGACAAGGAAAACCGGCTCCTTGATCAAGAGAAACAGCTTT
ATCAGGCTCGAATCCGATCTCAAATCCGAGCTAAACTCACTTCTTCCGGTGAACAATCCG
ATTTTAGCAATGAACAACAGCCTAATTATAGCCCTGTTTCACCACAAGACCATATTAGAG
GTCTAGCTGATCGGTTCATGAAGGAAGGTGCTGAGGATTTGTGGAATGAAGATGATGGAC
CGGTTAATACTCCACAGATAAATCAACAAAGCGGAGGTATTAGTGAGTCAATTGATTTGC
GCAAATTGAGAGATACTAAGTTTAATGATGTTCCTCGAAGTTATAGTTTTCAGAAAGCTA
GAAATTTTTGTACGAATATTAGTGATGTTTTCGCTGAAAATTGTAGAACTAGAAATCCAA
CTTTTTCGGATAGTTGGTCAAGACAGAACAAGTTTTTAATGTTTGGATGGAGGTTGGTTA
ATATTGAGAATAGAAATGTGAATAATTTGAATGGATTTTTGAATTATAGATGCTACTCAG
TAGATAGGATGAATGGGAATAAGTTGAGGAAATTGGATTTTACTAGAAATGAGAGTTCGC
AAAGTGAGGATAAATTGAGATCAGTGGGATTGGTGGTGAAGGGTGAGCGAAAAGCAAAAT
GGCCGAGGTTTAGACCGAAACCTGAGGAGTCAACTGATGAAGACGATGACGAAGATACTG
AGGTGGATGAGGACGAGGAGGAAAGACGGAGTAGAGGGAGTGTGAAGATGATGAGTAGTG
CTGCTCTAGGGAAGTATGATATGAAGACAAAGAAGAGAGTTCCATTGAAGTTTGTGGAAG
ATGAAGATGATTTATCACTGCATGTCGCGGCGATAAGGAAGGAGGTTAAAGGGCGGAGTA
TGCAGAAAATTGAAACCGAAGAAGACGAGAAGGAAACAATACTTAGCTCTAAAAGGTTTG
ATGAATATGATGTATCTCCTTTGACAGTCAAGGCCCTTACTGCAGCAGGTTATGTGCAAA
TGACTAAAGTGCAAGAGGCAACACTTTCTACTTGTCTTGAGGGAAAGGATGCTTTAGTTA
AAGCAAGGACAGGCACAGGCAAAAGTGCTGCATTTTTGCTTCCAGCCATTGAAACAGTTC
TGAAGGCCTCACGTAAAAAGAGTGCCCAAAGGGTCCCGCCAATAGATGTACTCATTCTCT
GTCCCACGCGAGAACTTGCTAGTCAGATAGCTGCTGAAGCTAATGTGTTGTTAAAGTACC
ATGAAGGCATTGGTGTGCAGACACTAGTTGGAGGGACAAGGTTCAAAGAAGATCAGAAAC
GCCTAGAGTGTGATCCATGCCAGATTATAGTTGCAACACCTGGTAGATTATTAGATCACA
TTGAGAACAAGTCTGGCTTCTCTACACGAATAATGGGATTGAAGATGTTAATACTTGATG
AAGCTGACCACTTACTGGACCTTGGGTTCCGGAAAGACATAGAGAAACTTGTTGATTGCT
TGCCTCGACGAAGGCAGTCCCTACTCTTTTCAGCTACTGTCCCAAAGGAGGTTCGTCGCA
TATCTCAACTTGTTCTGAAAAGAGAATATGACTATGTTGATACAGTGGGCCTTGGACTGG
AAACAAATCCAAAGGTTAAGCAATTTTATCTAGTTGCACCGCATGAACAACACTTTCAAG
TTGTGCACCATCTTTTGTCAAGCCATATCTCAGAAGTGCCTGATTACAAGGTCATTGTTT
TTTGTACAACAGCTATGATGACATCCCTCATGTTTTCCCTTTTCCATGAGATGAAAATGA
ATGTGAGAGAGATCCATTCCAGAAAACCTCAACTTTATCGTACTCGAATCTCTGATGAAT
TCAAGGAAACGAAACGTGTAATTCTTATAACCTCTGATGTGTCAGCTCGGGGGATGAATT
ATCCTGATGTTACACTTGTTATTCAGGTTGGTCTTCCTGTTGATCGAGAGCAGTATATAC
ACCGGCTTGGAAGAACTGGGCGAGAAGGCAAAGAAGGAGAAGGTATCCTGTTGCTTGCAC
CTTGGGAACAATATTTCTTGGATGACATAAAAGACCTCCCCATGGAAAACTGGCCAGTTC
CACGTCTTGATCCTCGTGTTAAAGTCAAGATGGAAGAAGCAATGGAAAAGATGGATACTA
GTGTCAAAGAATCAGCTTATCACGCTTGGCTTGGTTATTACAACTCGGTAAGGGAAGTAG
GCAGAGACAAGACAACACTTGTCGAGTTAGCTAACCAGTTTAGCGAGTCTATTGGTTTGG
ACAAGCCTCCTTCACTGTTCCGTAGAACAGCTCTAAAGATGGGATTGAAAGATATTCCTG
GCATCCGAATACGTAAGTAGCTCGGAATTTTTGATCTTACGTTTAAAGAGATTATATGAT
GTTAGAGGACAGTAGTAGCATCCACAGTTCTGGTGAACTGAACGTGCATTGATTTGGCGT
CAGGAAAAAACATTAGTTCCGCTGATTAGCGCCTAATGGAACTAATGTGTTAAATCTTCT
TGAAAAATGAAATGTAAATATTTGAGTGCGGAATTTGTTTATTCAGTACATTGTTAACTT
AAAGTTGCTATAAGAATTTATAAACTTTAAATTTCGAATTCGTTTTGCT