Plant GARDEN
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SNP Detection
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Data List

All Markers Trait-Related Loci
Solanum lycopersicum

CDS Sequence

CDS ID

Solyc12g042910.2.1
CDS Infomation

Cryptochrome-1 (AHRD V3.3 *** A0A151SGR1_CAJCA)
Sequence

ATGGCTTCTGGAGCGAACTCTTTGATGTGGTTCAGGAAGGGTTTGAGACTCCATGATAAT
CCAGCTTTGGAATATGCAGCTAAAGGATCGAAGTTTTTGTACCCTGTTTTCGTGATTGAT
CCACACTATATGGACCCTGATCCGACTGCATTTTCTCTGGGTTCATCTAAAGCCGGGTTG
AACCGGATACAGTTTTTGCTTGAAAGCCTTGCTGATCTCGATTTGAGTCTTAAGAAGGTT
GGTTCACGTTTGTTGGTGCTCAAGGGTGACCCTGGTGAGCTCTTGATTCGCTGCTTGAAG
GAGTGGAGCATAGGCAAACTTTGCTTTGAGTACGACACAGAGCCCTACTATCAAGCTTTA
GATGAAAAAGTTAAGGGCTATGTTTCTGGAACTGGTGTAGAGATTTTCTCTCCTGTGAGC
CATACCCTCTACAATCCTGCCGATATAATACATAAGAATGGTGGATCCCCACCTCTGAGT
TATCAGTCTTTCCTCAAACTGGCTGGGCAACCATCTTGGGCAGCAACCCCTCTTTCAACA
ACCATATCTTCACTTCCTCGTATTGGAAATACTGGAAGTTTTGCAGTCTCAGAAGTTCCA
ACTGTCAGAGAACTTGGTTATGAAGATTTACCAGAGGACGAAAAGACTCCTTTTAAAGGT
GGAGAATCAGAAGCACTGAAGAGGTTGAGAGAATCAATTGCTAACAAGGAATGGGTTGCA
AATTTTGAGAAACCCAAGGGTAATCCATCTGCATTTCTAAAACCAGCAACAACTGTTTTA
TCACCCTACTTAAAGTTTGGTTGTCTCTCTTCCAGGTACTTCTACCAGTGCATTCAGGAC
ATTCTGAAATGCTCTAAAAAGCATACTTCTCCACCTGTTTCTCTTCTTGGACAGTTGTTA
TGGCGCGACTTTTTCTACACAGCTGCCTTTGGAACTCCTAATTTTGATCAGATGAAGGGT
AACAGAATATGCAAACAGATACCTTGGAAGAATGATGATAAATTGCTAGCTGCTTGGAGA
GATTCCAAGACAGGGTTTCCTTGGATTGATGCCATAATGGTCCAGCTTCGAAAGTGGGGT
TGGATCCATCATCTTGCTCGACACAGTGTAGCATGCTTTCTAACTCGTGGGGATCTGTTT
GTGCATTGGGAGAGAGGACGTCATGTTTTTGAAAGACTGCTTATTGACTCTGATTGGGCA
ATCAACAACGGAAACTGGTTGTGGCTATCATGCTCTTCATTTTTCTACCAGTATAATCGG
ATTTATTCACCAATCTCATTTGGAAAAAAGTATGATCCTGCCGGGAACTATATCAGGCAT
TTTCTTCCTGTTTTAAAAGATATGCCTAAGGAGTATATATATGAACCTTGGACTGCTCCT
ATAAGTGTCCAACGTAAAGCAAAATGCATCATTGGCGTAGATTATCCCAAACCAGTTGTT
TCCCATGATTCTGCAAGCAAAGAATGTAAGATGAGACTTGGTGAAGCATATGCATTGAAC
AAGAAGCTGAATGGCTTGGTCAGTGAGGAAGACTTGAACGAGTTAAGGAGAAAAGCAGAC
AATGAATCTACAACTCTGGATTCTGTTTCCAGGAAGAAAAAACAGAAGTTAATTGATTAG

Peptide Sequence

PEP ID

Solyc12g042910.2.1
PEP Infomation

Cryptochrome-1 (AHRD V3.3 *** A0A151SGR1_CAJCA)
Sequence

MASGANSLMWFRKGLRLHDNPALEYAAKGSKFLYPVFVIDPHYMDPDPTAFSLGSSKAGL
NRIQFLLESLADLDLSLKKVGSRLLVLKGDPGELLIRCLKEWSIGKLCFEYDTEPYYQAL
DEKVKGYVSGTGVEIFSPVSHTLYNPADIIHKNGGSPPLSYQSFLKLAGQPSWAATPLST
TISSLPRIGNTGSFAVSEVPTVRELGYEDLPEDEKTPFKGGESEALKRLRESIANKEWVA
NFEKPKGNPSAFLKPATTVLSPYLKFGCLSSRYFYQCIQDILKCSKKHTSPPVSLLGQLL
WRDFFYTAAFGTPNFDQMKGNRICKQIPWKNDDKLLAAWRDSKTGFPWIDAIMVQLRKWG
WIHHLARHSVACFLTRGDLFVHWERGRHVFERLLIDSDWAINNGNWLWLSCSSFFYQYNR
IYSPISFGKKYDPAGNYIRHFLPVLKDMPKEYIYEPWTAPISVQRKAKCIIGVDYPKPVV
SHDSASKECKMRLGEAYALNKKLNGLVSEEDLNELRRKADNESTTLDSVSRKKKQKLID*

Transcript Sequence

Transcript ID

Solyc12g042910.2.1
Transcript Infomation

Cryptochrome-1 (AHRD V3.3 *** A0A151SGR1_CAJCA)
Sequence

CGCTTGCTGCGTTCTGCCCTTAACTTCCTCATGAAAAATGAACAAACTGTTCTCCCTTTC
GCTAATTCTAACCACCCGGCTCACGTTAGTGAACGCCCCTCATTATACAAAGTACCAGAA
GTTAGAGCCCATTTATGGCGGGAAACCCCATAACCGTTTAAATAAATTCTCTTTTTCTTC
ATTTCTCTGTAAAATCATCTATGGCTTCTGGAGCGAACTCTTTGATGTGGTTCAGGAAGG
GTTTGAGACTCCATGATAATCCAGCTTTGGAATATGCAGCTAAAGGATCGAAGTTTTTGT
ACCCTGTTTTCGTGATTGATCCACACTATATGGACCCTGATCCGACTGCATTTTCTCTGG
GTTCATCTAAAGCCGGGTTGAACCGGATACAGTTTTTGCTTGAAAGCCTTGCTGATCTCG
ATTTGAGTCTTAAGAAGGTTGGTTCACGTTTGTTGGTGCTCAAGGGTGACCCTGGTGAGC
TCTTGATTCGCTGCTTGAAGGAGTGGAGCATAGGCAAACTTTGCTTTGAGTACGACACAG
AGCCCTACTATCAAGCTTTAGATGAAAAAGTTAAGGGCTATGTTTCTGGAACTGGTGTAG
AGATTTTCTCTCCTGTGAGCCATACCCTCTACAATCCTGCCGATATAATACATAAGAATG
GTGGATCCCCACCTCTGAGTTATCAGTCTTTCCTCAAACTGGCTGGGCAACCATCTTGGG
CAGCAACCCCTCTTTCAACAACCATATCTTCACTTCCTCGTATTGGAAATACTGGAAGTT
TTGCAGTCTCAGAAGTTCCAACTGTCAGAGAACTTGGTTATGAAGATTTACCAGAGGACG
AAAAGACTCCTTTTAAAGGTGGAGAATCAGAAGCACTGAAGAGGTTGAGAGAATCAATTG
CTAACAAGGAATGGGTTGCAAATTTTGAGAAACCCAAGGGTAATCCATCTGCATTTCTAA
AACCAGCAACAACTGTTTTATCACCCTACTTAAAGTTTGGTTGTCTCTCTTCCAGGTACT
TCTACCAGTGCATTCAGGACATTCTGAAATGCTCTAAAAAGCATACTTCTCCACCTGTTT
CTCTTCTTGGACAGTTGTTATGGCGCGACTTTTTCTACACAGCTGCCTTTGGAACTCCTA
ATTTTGATCAGATGAAGGGTAACAGAATATGCAAACAGATACCTTGGAAGAATGATGATA
AATTGCTAGCTGCTTGGAGAGATTCCAAGACAGGGTTTCCTTGGATTGATGCCATAATGG
TCCAGCTTCGAAAGTGGGGTTGGATCCATCATCTTGCTCGACACAGTGTAGCATGCTTTC
TAACTCGTGGGGATCTGTTTGTGCATTGGGAGAGAGGACGTCATGTTTTTGAAAGACTGC
TTATTGACTCTGATTGGGCAATCAACAACGGAAACTGGTTGTGGCTATCATGCTCTTCAT
TTTTCTACCAGTATAATCGGATTTATTCACCAATCTCATTTGGAAAAAAGTATGATCCTG
CCGGGAACTATATCAGGCATTTTCTTCCTGTTTTAAAAGATATGCCTAAGGAGTATATAT
ATGAACCTTGGACTGCTCCTATAAGTGTCCAACGTAAAGCAAAATGCATCATTGGCGTAG
ATTATCCCAAACCAGTTGTTTCCCATGATTCTGCAAGCAAAGAATGTAAGATGAGACTTG
GTGAAGCATATGCATTGAACAAGAAGCTGAATGGCTTGGTCAGTGAGGAAGACTTGAACG
AGTTAAGGAGAAAAGCAGACAATGAATCTACAACTCTGGATTCTGTTTCCAGGAAGAAAA
AACAGAAGTTAATTGATTAGGACTACGCCATTGAAACCATAGGTGTATACAAGATCGGCA
GCTAGGCAACCAGTATTTGTAGGAGCTACGAAAGAACATTCTCCTCCAACGACATCTCCT
TTAAAATGATGCCACTGGTGATGCCTTGGCCCTTAGGTCCCTTAACTCAATAGTGTTAAA
ATGTAGGTGTCCTATTATAGTATATCATGTGTGTGCCAGGATTCGGGAGATTAGAGTTAA
CATACTGAGAGAAGGAGAATGAGTGTGTGTGTGTGTCAAAATAGAGAAGCACAAATCTGG
TATGTTTTGATATTTAAGTGAATAAGATCATTAAGATATTTAGCTCTTCTTTAACAGTGA
CAACCTATAAAGGAGAATGTGATGTATCCCTGTTGTTCTTTGACGATGTCCTACTCACAA
TACATGATACGTTTTAGATCCCTTCTTCCCTTGATTATGTTTTGATAGCTTTTAGGAAAT
GAGTCCTTTTCATTGTCTTCCTTCTTTTTTGTTGGAAGATATTGTGAAATACGATGTGTT
TCATATGAATTTATTATTTATGACGATTCTAGTATTAAACATTCATCATCAGTTATTCAT
ATTCGAAAAAA