Plant GARDEN
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TOP > About the Species(Solanum lycopersicum ) > genome data >Gene sequences

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SNP Detection
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Data List

All Markers Trait-Related Loci
Solanum lycopersicum

CDS Sequence

CDS ID

Solyc12g042460.2.1
CDS Infomation

4-coumarate--CoA ligase-like
Sequence

ATGGATCCAAATCAAGTAGGAGACATAATTTTTAAATCAAAACTCCCTGATATTATTATC
CCAAATCATCTTCCTTTACATACTTATTGCTTCCAAAACATTTCACAATTCAATAATCGT
CCATGTTTGATCAATGGATCCAATGATCAAATTTACACATATGCTGATGTTGAGCTCACT
TCAAGAAAAGTTGCAATTGGTCTTAACAAGTTAGGGGTTCAACAAAAGGATACAATAATG
ATCCTCTTGCCTAATTCACCTGAATTTGTATTCACCTTCTTAGGTGCATCATATATTGGA
GCTATTTCCACAATGGCAAACCCTTTGTTTACACAAGTAGAGGTGATGAAACAAGCCAAA
GCCTCAAATGCCAAGCTCATTATCACACAAGAATGTAATTTCAACAAAGTGAAGCACTAT
GCATTTGAGAATGATGTGAAGGTCATTTGCATTGATGGCCACTCATCGTCTGAGGGCTAC
TTACATTTCTCAGACCTGATTTCAAATTCTGGATTCACCTCTAAACATGACCACCTGCCT
GAGATGGAAATCCATCCGGATGATGTGGTGGCATTACCATACTCATCGGGGACCACGGGG
TTACCAAAAGGGGTCATGTTGACACACAAGGGACTAGTCACTAGTGTGGCACAACAAGTT
GATGGTGAAAATCCAACTTTGTTTTTTCATAGTGAAGATGTGATACTTTGTATCTCACCT
TTATTTCACATTTATGCCTTGGATTCTGTCCTACTTTGTGGATTAAGAGTTGGAGCAACA
ATCTTGCTTATGAAGAAATTTGATGTTGTTACATGCTTGGAATTGGTACAAAAGTACAAA
GTCACAATTGGACCTTTTGTACCACCTATAATTTTGGCTATTGCTAAAAGTCAAGTAGTT
GATAATTATGACCTTTCATCAGTAAGGATAGTCATTTCTGGGGCAGCACCATTAGGAAAG
AAGCTTGAAGAGGTAGTTGGAATTAAATTTCCTAATGCTAAACTTGGTCAGGGTTATGGA
ATGACGGAGGCCGGTGCACCTATAACAATGTGCTTAGCATTTGCAAAAGAACCTTTTGAG
ATAAAATCAGGGGCATGTGGCACAGTAATAAGGAATGCTGAGATGAAAATTGTGGATCCA
GATACTGGTATTTCTCTTCCTCGAAATAAACCCGGAGAAATTTGCATTAGAGGTGACCAA
ATTATGAAAGGTTATTTAAATGATCCTGAGGCAACTAAAAGAACAATAGATAAAGAAGGA
TGGTTACATAGTGGTGATATAGGCTATATTGACGATGATGATGAGCTTTTTATTGTGGAT
CGATTAAAGGAATTGATAAAATATAAAGGATTTCAAGTAGCACCTGCTGAGCTTGAAGCA
CTTCTTCTTAATCTTTCTAATATTTCAGATGCTGCTGTTGTATCCATGAAAGATGAGCAA
ACAGGAGAAGTTCCAGTGGCTTTTGTTGTTAGATCAAATGGATCCATCATTACTGAGGAT
GAAATCAAGGATTTCATCTCTAAGCAGGTGATATTTTATAAGAGAATAAAGAGGATATTT
TTTGTGGATGTGATTCCTAAATCTCCATCAGGCAAAATACTTCGAAAAGATTTAAGGGCA
AGACTGGCTGCTGAGCTTCCTAATTAA

Peptide Sequence

PEP ID

Solyc12g042460.2.1
PEP Infomation

4-coumarate--CoA ligase-like
Sequence

MDPNQVGDIIFKSKLPDIIIPNHLPLHTYCFQNISQFNNRPCLINGSNDQIYTYADVELT
SRKVAIGLNKLGVQQKDTIMILLPNSPEFVFTFLGASYIGAISTMANPLFTQVEVMKQAK
ASNAKLIITQECNFNKVKHYAFENDVKVICIDGHSSSEGYLHFSDLISNSGFTSKHDHLP
EMEIHPDDVVALPYSSGTTGLPKGVMLTHKGLVTSVAQQVDGENPTLFFHSEDVILCISP
LFHIYALDSVLLCGLRVGATILLMKKFDVVTCLELVQKYKVTIGPFVPPIILAIAKSQVV
DNYDLSSVRIVISGAAPLGKKLEEVVGIKFPNAKLGQGYGMTEAGAPITMCLAFAKEPFE
IKSGACGTVIRNAEMKIVDPDTGISLPRNKPGEICIRGDQIMKGYLNDPEATKRTIDKEG
WLHSGDIGYIDDDDELFIVDRLKELIKYKGFQVAPAELEALLLNLSNISDAAVVSMKDEQ
TGEVPVAFVVRSNGSIITEDEIKDFISKQVIFYKRIKRIFFVDVIPKSPSGKILRKDLRA
RLAAELPN*

Transcript Sequence

Transcript ID

Solyc12g042460.2.1
Transcript Infomation

4-coumarate--CoA ligase-like
Sequence

TTTTGAGTCTTCAATTCATGCTTGTTTTATGTTCAACATAGGCAGTTACAAAGAGAGATA
GTTGATCTCCATACAATTAGTATTTAATTTAATAAAATATATTTTAATATGATTTAGTGG
CTACTCCAAATAAAGTTAAATAAGGTGTTTCCATTACACATCCCTATAAATATGAACATT
TCATCTTTCAACAAATCCTTATACCCTTTTATCTCAAAGTCTATTTCTTCAATTTTTTCA
AGTTGAAAGTGAAGATGGATCCAAATCAAGTAGGAGACATAATTTTTAAATCAAAACTCC
CTGATATTATTATCCCAAATCATCTTCCTTTACATACTTATTGCTTCCAAAACATTTCAC
AATTCAATAATCGTCCATGTTTGATCAATGGATCCAATGATCAAATTTACACATATGCTG
ATGTTGAGCTCACTTCAAGAAAAGTTGCAATTGGTCTTAACAAGTTAGGGGTTCAACAAA
AGGATACAATAATGATCCTCTTGCCTAATTCACCTGAATTTGTATTCACCTTCTTAGGTG
CATCATATATTGGAGCTATTTCCACAATGGCAAACCCTTTGTTTACACAAGTAGAGGTGA
TGAAACAAGCCAAAGCCTCAAATGCCAAGCTCATTATCACACAAGAATGTAATTTCAACA
AAGTGAAGCACTATGCATTTGAGAATGATGTGAAGGTCATTTGCATTGATGGCCACTCAT
CGTCTGAGGGCTACTTACATTTCTCAGACCTGATTTCAAATTCTGGATTCACCTCTAAAC
ATGACCACCTGCCTGAGATGGAAATCCATCCGGATGATGTGGTGGCATTACCATACTCAT
CGGGGACCACGGGGTTACCAAAAGGGGTCATGTTGACACACAAGGGACTAGTCACTAGTG
TGGCACAACAAGTTGATGGTGAAAATCCAACTTTGTTTTTTCATAGTGAAGATGTGATAC
TTTGTATCTCACCTTTATTTCACATTTATGCCTTGGATTCTGTCCTACTTTGTGGATTAA
GAGTTGGAGCAACAATCTTGCTTATGAAGAAATTTGATGTTGTTACATGCTTGGAATTGG
TACAAAAGTACAAAGTCACAATTGGACCTTTTGTACCACCTATAATTTTGGCTATTGCTA
AAAGTCAAGTAGTTGATAATTATGACCTTTCATCAGTAAGGATAGTCATTTCTGGGGCAG
CACCATTAGGAAAGAAGCTTGAAGAGGTAGTTGGAATTAAATTTCCTAATGCTAAACTTG
GTCAGGGTTATGGAATGACGGAGGCCGGTGCACCTATAACAATGTGCTTAGCATTTGCAA
AAGAACCTTTTGAGATAAAATCAGGGGCATGTGGCACAGTAATAAGGAATGCTGAGATGA
AAATTGTGGATCCAGATACTGGTATTTCTCTTCCTCGAAATAAACCCGGAGAAATTTGCA
TTAGAGGTGACCAAATTATGAAAGGTTATTTAAATGATCCTGAGGCAACTAAAAGAACAA
TAGATAAAGAAGGATGGTTACATAGTGGTGATATAGGCTATATTGACGATGATGATGAGC
TTTTTATTGTGGATCGATTAAAGGAATTGATAAAATATAAAGGATTTCAAGTAGCACCTG
CTGAGCTTGAAGCACTTCTTCTTAATCTTTCTAATATTTCAGATGCTGCTGTTGTATCCA
TGAAAGATGAGCAAACAGGAGAAGTTCCAGTGGCTTTTGTTGTTAGATCAAATGGATCCA
TCATTACTGAGGATGAAATCAAGGATTTCATCTCTAAGCAGGTGATATTTTATAAGAGAA
TAAAGAGGATATTTTTTGTGGATGTGATTCCTAAATCTCCATCAGGCAAAATACTTCGAA
AAGATTTAAGGGCAAGACTGGCTGCTGAGCTTCCTAATTAACATCTTGGTCTTTTGGGAC
AATTATGTCTTATATTACATGTCTTTATATAAAAAAAGTTAGTCAGTCATCAAATTATTT
AAATTTTGCTCAATTTTTATATTTAGCAAATATAAAAATTAT