Plant GARDEN
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SNP Detection
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Data List

All Markers Trait-Related Loci
Solanum lycopersicum

CDS Sequence

CDS ID

Solyc12g042440.2.1
CDS Infomation

FRIGIDA-like protein, putative (AHRD V3.3 *** A0A061G6R8_THECC)
Sequence

ATGGAGAATCTGGCTGACTCCGCCGTATCCCAGACCTCCACCGCCGCCGGGCAGCATCCG
CAGACGGCTGATACCACCCCTTCACCGGCGTCACCACCGTCAGCCTCGAATCAAACCTCA
TCCGAAGAAAAAGACTCAAAATCTCCGGATTCACAGCTCGAAACCCTCTGCAAGACGATG
TGCGGCAAGGGACTTCGAAGTTACATATTATCGAAACTCCCAGAGAAAAACACACTGCGC
GAAGAACTCACCAAGGCATTGAAACTTGCACCCAATGCAGCAAAGCTTGTACTTAGCTGT
ATGGGAGACTTCTTTGCTAAAAGGGGCAAAGCTTTTGATAAGGATGCTCGGATGATTGCC
ACAAGGGAAGCATCTGCATTGGTTTTGGAGTGTTTCTTGTTGATAGGTTTCGATGTAATT
GATGAAGGGGTAAAGGAAGAAGCTGCACAAGCAGCAGTGATATGGAGAAGAAGGTTTGTT
GATGAACGAGGTATACGAAAGGCTAGTACAATGGATGCTCGGGGATTGCTATTGCTTATT
GGGTGTTTTGGGATTCCCCAAATTTTTTACAATGAGGACATTAGGGACTTGATTCGAGTG
AGTAATATCAGGGAGATATCTACTGCACTCAGGAGATCAAATGTGCTTATGGAAAAGATT
CCAGATATAATAGCGGGCATGGTGAAGAATAAGATGGAAGTTGATGCTGTAGATGTTGCT
TATACTTTTGGAGTTGAGGAAAAATGTAGCCCTTGCGAAATTTTGTCATCATTTTTAGAA
GAACTAAGAGAATCGCTGAAGAAAAAGAAATGCCAATCACATGGTTCACATGCTGTTGTG
AATGAAGCAAACAAGAGGGAATTGTCTACTATGAAATCTGTCATCGAATGTTTGGAAGCC
CACAACATTGATCCCTCAAAGCTTATTCCACGATTCCGTATCAGTGACAGAATTATGAGC
TTGGAGGAAAAAATTGCTAGGAATGATCAAAGAAGAGAGAAGATGGTGCAAAATCGGAAA
TTTGAAGAAACTGGGTTATCTAGAAGGTTCGAAGAGAGACGAGCAAAACGCGCCTGCATA
CTAGATTCAGAGCATCATAGACCTGTAAATTACATCAGTAGCCAGAGACCCTTGTTAGCA
GGTCTGCCTCCTAGCCACATTTATGGTTATTCTGTGTCACCATCAGCATTGCCTATTCAT
GACATTGTTCCTGGCTCACCAGCAGCAAGTTGGGGAGGTATGGTTATGGGTGGAGTTAGT
TCAGGTATCATAAGAAGCAGAAATGACGCTCTACAAGCTGGCGCATATGGTGGATTTCGT
GAGAGGATACCAATTGAACATAAAACTGGGCAAATAAGAAGTTACAATAATCAGTTATAT
GAATGGCAAGAGAATGCATCCATGCATGAAAGGGAGGTCTCTCATAACTACGGTTACGGG
TCATCACCATCGTGGCAAGGCTCTATGGAGTTGCCAAACCCTGTTCCTGTTGGTCCTGGT
TACCAGACCGCTGCTTCTGATCCTTATCAGTTGGCTAGTACTGTTCAAAGTTCCCCATAT
CATAACAGAGGCGTTGTTCCCTCTGTTAACCATTATTCATCCTACTTGTACCCAGGGACA
TATTATCCCCAGGGCATGCAGTAA

Peptide Sequence

PEP ID

Solyc12g042440.2.1
PEP Infomation

FRIGIDA-like protein, putative (AHRD V3.3 *** A0A061G6R8_THECC)
Sequence

MENLADSAVSQTSTAAGQHPQTADTTPSPASPPSASNQTSSEEKDSKSPDSQLETLCKTM
CGKGLRSYILSKLPEKNTLREELTKALKLAPNAAKLVLSCMGDFFAKRGKAFDKDARMIA
TREASALVLECFLLIGFDVIDEGVKEEAAQAAVIWRRRFVDERGIRKASTMDARGLLLLI
GCFGIPQIFYNEDIRDLIRVSNIREISTALRRSNVLMEKIPDIIAGMVKNKMEVDAVDVA
YTFGVEEKCSPCEILSSFLEELRESLKKKKCQSHGSHAVVNEANKRELSTMKSVIECLEA
HNIDPSKLIPRFRISDRIMSLEEKIARNDQRREKMVQNRKFEETGLSRRFEERRAKRACI
LDSEHHRPVNYISSQRPLLAGLPPSHIYGYSVSPSALPIHDIVPGSPAASWGGMVMGGVS
SGIIRSRNDALQAGAYGGFRERIPIEHKTGQIRSYNNQLYEWQENASMHEREVSHNYGYG
SSPSWQGSMELPNPVPVGPGYQTAASDPYQLASTVQSSPYHNRGVVPSVNHYSSYLYPGT
YYPQGMQ*

Transcript Sequence

Transcript ID

Solyc12g042440.2.1
Transcript Infomation

FRIGIDA-like protein, putative (AHRD V3.3 *** A0A061G6R8_THECC)
Sequence

ATAAAAATGTAATTTTAAAGTTATTATTTGCCTCAAATTTCAAGTGTTTTCGATACTCTC
TCTAATAGGAAATGTAGAATAGAAGAGCATTGAAGACGCTTTGGGTCTTTTTGACTTCTC
GTATTGGTTATCAGCTTCTCCGATGGAGAATCTGGCTGACTCCGCCGTATCCCAGACCTC
CACCGCCGCCGGGCAGCATCCGCAGACGGCTGATACCACCCCTTCACCGGCGTCACCACC
GTCAGCCTCGAATCAAACCTCATCCGAAGAAAAAGACTCAAAATCTCCGGATTCACAGCT
CGAAACCCTCTGCAAGACGATGTGCGGCAAGGGACTTCGAAGTTACATATTATCGAAACT
CCCAGAGAAAAACACACTGCGCGAAGAACTCACCAAGGCATTGAAACTTGCACCCAATGC
AGCAAAGCTTGTACTTAGCTGTATGGGAGACTTCTTTGCTAAAAGGGGCAAAGCTTTTGA
TAAGGATGCTCGGATGATTGCCACAAGGGAAGCATCTGCATTGGTTTTGGAGTGTTTCTT
GTTGATAGGTTTCGATGTAATTGATGAAGGGGTAAAGGAAGAAGCTGCACAAGCAGCAGT
GATATGGAGAAGAAGGTTTGTTGATGAACGAGGTATACGAAAGGCTAGTACAATGGATGC
TCGGGGATTGCTATTGCTTATTGGGTGTTTTGGGATTCCCCAAATTTTTTACAATGAGGA
CATTAGGGACTTGATTCGAGTGAGTAATATCAGGGAGATATCTACTGCACTCAGGAGATC
AAATGTGCTTATGGAAAAGATTCCAGATATAATAGCGGGCATGGTGAAGAATAAGATGGA
AGTTGATGCTGTAGATGTTGCTTATACTTTTGGAGTTGAGGAAAAATGTAGCCCTTGCGA
AATTTTGTCATCATTTTTAGAAGAACTAAGAGAATCGCTGAAGAAAAAGAAATGCCAATC
ACATGGTTCACATGCTGTTGTGAATGAAGCAAACAAGAGGGAATTGTCTACTATGAAATC
TGTCATCGAATGTTTGGAAGCCCACAACATTGATCCCTCAAAGCTTATTCCACGATTCCG
TATCAGTGACAGAATTATGAGCTTGGAGGAAAAAATTGCTAGGAATGATCAAAGAAGAGA
GAAGATGGTGCAAAATCGGAAATTTGAAGAAACTGGGTTATCTAGAAGGTTCGAAGAGAG
ACGAGCAAAACGCGCCTGCATACTAGATTCAGAGCATCATAGACCTGTAAATTACATCAG
TAGCCAGAGACCCTTGTTAGCAGGTCTGCCTCCTAGCCACATTTATGGTTATTCTGTGTC
ACCATCAGCATTGCCTATTCATGACATTGTTCCTGGCTCACCAGCAGCAAGTTGGGGAGG
TATGGTTATGGGTGGAGTTAGTTCAGGTATCATAAGAAGCAGAAATGACGCTCTACAAGC
TGGCGCATATGGTGGATTTCGTGAGAGGATACCAATTGAACATAAAACTGGGCAAATAAG
AAGTTACAATAATCAGTTATATGAATGGCAAGAGAATGCATCCATGCATGAAAGGGAGGT
CTCTCATAACTACGGTTACGGGTCATCACCATCGTGGCAAGGCTCTATGGAGTTGCCAAA
CCCTGTTCCTGTTGGTCCTGGTTACCAGACCGCTGCTTCTGATCCTTATCAGTTGGCTAG
TACTGTTCAAAGTTCCCCATATCATAACAGAGGCGTTGTTCCCTCTGTTAACCATTATTC
ATCCTACTTGTACCCAGGGACATATTATCCCCAGGGCATGCAGTAATATGTAGTTTCAGG
TTTCTCTTGTAGAAATGCTTCGAAGTTGATAACTTTTGTGGGAAGCATCATGATTCATGG
GCAAGTAATCTGATAAACAACCTGGATATGAGT