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TOP > About the Species(Solanum lycopersicum ) > genome data >Gene sequences

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SNP Detection
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Data List

All Markers Trait-Related Loci
Solanum lycopersicum

CDS Sequence

CDS ID

Solyc12g041880.2.1
CDS Infomation

Protein NEOXANTHIN-DEFICIENT 1 (AHRD V3.3 *** NDX1_SOLLC)
Sequence

ATGGAAGTGAAAGACACAAATTGTACTTCATTGGGTTATGGAAAACCTCCATGGATTTTT
AAAGGCAGTGCTTTATACCAACTTCATCTTGTCAAAGCAGAGAACGCTAGAGCTTTCATT
CCTAAAGAGTGCAAACTAGTTGAGGCATTTGGATATACTCTTGGTGGGTTTTTTCTTGCT
AGCTATGATGATAGTCCTGCTGGAATTTTCGATGAGCTTGTGGTGATTGCAGGATTAGTG
TGGAATCCACCTACGTCTTGTGCATGGGCTGCCAGGGTGCTGGTGGGCAGTGATGAGGCA
TGCCTTCATGGACGGAAGGTTGTAGGTCTTCCAAGCCAAGTTGCCAGATTTTCGAAGAAA
ATTACAGCACTTCCACAGAAACCGGAAAGTAAATCAAGCAGTTTCCTAAGAAGGATTGGC
TTGAGGACATCTTCTAACTATAAGAATCACATGGACGTAGAAGTGACTGAAATAAAGAAA
CAGACAGCAATGAGTATCTGCAACATCAATGTTAATGCCACTGCTTCTCAGCAGGATTCT
AAGGGATGGATGGGTCCACTTATCAAAATGTCACTACCAAACTTCAGTGGACGGACGAAG
TACAATTCTGATCTCCTCAAGTACTCTTGCCAGATTGAGTGCAGGGTAAGAGCAGTGCAA
CCAGCAAAAGTTTCGGGACCATCTGAGTCAGATGCAGACAAGGAAAATTCATCTGAAGAT
CAGAGCTCAAATGTGGAATCAGTTAGCAGAGTGCCCAGAGGGACCAAGAGAAATTTCAGC
ATATCTGTGATGCTGTCGAAGCCCATTTTGGCTTTAGAATTCAATCATCTGAAAATGAGA
GTTGAAGCTCCTACTACAGTTACCGCATGTTCCCATGACACTACTTGA

Peptide Sequence

PEP ID

Solyc12g041880.2.1
PEP Infomation

Protein NEOXANTHIN-DEFICIENT 1 (AHRD V3.3 *** NDX1_SOLLC)
Sequence

MEVKDTNCTSLGYGKPPWIFKGSALYQLHLVKAENARAFIPKECKLVEAFGYTLGGFFLA
SYDDSPAGIFDELVVIAGLVWNPPTSCAWAARVLVGSDEACLHGRKVVGLPSQVARFSKK
ITALPQKPESKSSSFLRRIGLRTSSNYKNHMDVEVTEIKKQTAMSICNINVNATASQQDS
KGWMGPLIKMSLPNFSGRTKYNSDLLKYSCQIECRVRAVQPAKVSGPSESDADKENSSED
QSSNVESVSRVPRGTKRNFSISVMLSKPILALEFNHLKMRVEAPTTVTACSHDTT*

Transcript Sequence

Transcript ID

Solyc12g041880.2.1
Transcript Infomation

Protein NEOXANTHIN-DEFICIENT 1 (AHRD V3.3 *** NDX1_SOLLC)
Sequence

AGATACTACTTTCATATTTTTGGGCCCAACATTGGTGGCCAAGAAAAAGGATTCACCTGC
CTTACCTCATCTTCTTCTTAATAACTTCAAGTATTAGAGCTCTTCTTTTTCTTTGCTTTC
TTCATCCTAATTGCAAAGGGGCATATGCTATTATATAATTGGTATTTTGGAGTTCATGGA
AGTGAAAGACACAAATTGTACTTCATTGGGTTATGGAAAACCTCCATGGATTTTTAAAGG
CAGTGCTTTATACCAACTTCATCTTGTCAAAGCAGAGAACGCTAGAGCTTTCATTCCTAA
AGAGTGCAAACTAGTTGAGGCATTTGGATATACTCTTGGTGGGTTTTTTCTTGCTAGCTA
TGATGATAGTCCTGCTGGAATTTTCGATGAGCTTGTGGTGATTGCAGGATTAGTGTGGAA
TCCACCTACGTCTTGTGCATGGGCTGCCAGGGTGCTGGTGGGCAGTGATGAGGCATGCCT
TCATGGACGGAAGGTTGTAGGTCTTCCAAGCCAAGTTGCCAGATTTTCGAAGAAAATTAC
AGCACTTCCACAGAAACCGGAAAGTAAATCAAGCAGTTTCCTAAGAAGGATTGGCTTGAG
GACATCTTCTAACTATAAGAATCACATGGACGTAGAAGTGACTGAAATAAAGAAACAGAC
AGCAATGAGTATCTGCAACATCAATGTTAATGCCACTGCTTCTCAGCAGGATTCTAAGGG
ATGGATGGGTCCACTTATCAAAATGTCACTACCAAACTTCAGTGGACGGACGAAGTACAA
TTCTGATCTCCTCAAGTACTCTTGCCAGATTGAGTGCAGGGTAAGAGCAGTGCAACCAGC
AAAAGTTTCGGGACCATCTGAGTCAGATGCAGACAAGGAAAATTCATCTGAAGATCAGAG
CTCAAATGTGGAATCAGTTAGCAGAGTGCCCAGAGGGACCAAGAGAAATTTCAGCATATC
TGTGATGCTGTCGAAGCCCATTTTGGCTTTAGAATTCAATCATCTGAAAATGAGAGTTGA
AGCTCCTACTACAGTTACCGCATGTTCCCATGACACTACTTGACTAGTCATTTTTTTCTT
TTACATGCGCCTTCATAAGATTGTTGGTCTTCTAATATATGTATGTTCATTTATAAAATA
AATTACTTTTGTTCATTCAATTGTTGTCACTATCAGAAAACTTGGTCATTTGCACCTTGT
ACAATGACATACAGAGGCTTATTTTGATCAGTGATCTTGTTGTTGCACTCTATTTGCTAT
ACAAGATAATAAAGCAGAATTGTCTTAAAGCATTAATGATAGAACTTAATATAGTAAATA
TATGGAAAGTCTCAGAGCCAGTTGCTTTACACATTCAAAAATAGCCTAATTGAAATATAC
AATCATGTTCACAACCAATGGAGAGTTAAAGGTTTAACTTATAGCTACATCTCATAGCAG
CTTCCTCTTCAGGCTGCCACTGCCAATGCTGGCATCACCAATTTCAGGGGAGTTACTATC
AACTTCTGAAGCTTTGTATAATACCTTGCCTCGGTTCCTTGACAATTTCTTGACCCAAGT
GATTGGTAACATTCGTTGACAATCATCCATCGCAACTGGCTTATTAGCCTCAGTAATGAC
TGGATTAACCAATATGTCTCTGTTTGGTTCATTAGCTTCAGTAAAGACTGGATTCACCAA
TATGTTCCTGTTTGGCATCAGCGCTTCTCCTTCTGGCACTGCATTCTTCATCAGCTGTGT
GCACACTCCCAATCAGCAAAATCTAATCTGAAGACGAAGTGGCTGTATTTAACTTCACCA
GACTTAACTAATTTGGCATCAGGACCATTCCTTGGAGCTGAGAAAGGAAGAATATTAGAA
AGGAAAAACCAAACTACAGAAAGAAAGACTGGGACATACATAAATTGCACTGCTCAGTAA
ATGGAAGATTTAGAAAGGTATCTTACACAGAAAGTGAGATCCATTTTCATCGACGTCTAT
GACAACCCGTCCATCTTTCACTAGAAAAGATAGTGCAAATAAATTCTCAATGCTTTGCGC
AAAAGATTTTCTGTTCACTATGAGATACTCAAGCTTGACTCTCTTCTTCTCCCTTAGGAT
TTGAAACATAGTTGATATGTTGCTGTCTGTATCTGTTTTCTCCTCTATATCATCAAGCTG
TGATACAAGGCAGATTACATACACTGAATATAACTCAAGCAGCCATTTTTATGCTTTAGT
AAATAAACAACTACTTCACCTCAATCCCAAACAACAATAGCAAATTCCCTTACTATGTCT
CCAAGACAATACTTTGAATCCAAATTGGACATAATAAAGTAAGGGAATTTGCTATAGACA
CTCATGCATCAGTATTCAAAACACATACAACTCTTACATGTACACTTTGACAATAGTAAC
AGCATAGTACACAAAATATGAGAAAGATCATACCTCTTTAGGTTGAGCATGCAAGTAAAC
CTTTGTGTGTGGTTTACGTATAGTATACTTACGTTGCTTAACTTCACAATTCATGGGTCC
AATCCTTCAGAATATAGCAACAAACAAAGCACATAAAAATACAAGAACAAGTCCCCCATG
CACTACTAACTAAATAGTGAGGCATTATGAATCAAGAAAAGGGTTGCCAAAACAAAACTT
ACATTGTGTGGCAACCTCTTCCATTCCTAAAAATTGGTGAAACAGCAAGCCCAAGTTTCT
TCCAACCTACAGTATCTTCATTTGGAGAGAGCCCTTTTTGATGTTTTGCACTTCGTGGCC
CAAAGGCTCCGAGCAAAGAGGAAATGAATATATAAGGTGTAACATCATCAGCAGAATGTG
ATCTAACTGAAGCCACCAAAGTTC