Plant GARDEN
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SNP Detection
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Data List

All Markers Trait-Related Loci
Solanum lycopersicum

CDS Sequence

CDS ID

Solyc12g021230.2.1
CDS Infomation

DNA gyrase subunit B (AHRD V3.3 *** K4DDP2_SOLLC)
Sequence

ATGGCTCTGCTAAAACCATTTCCTCTTCAATACTCTCTTCGTCGCATGGCTTCTCGTTAT
CTTCTTCATTGTCACTCTCATACTCTTCCCTTTTCTTCAACCTTTCTTTCTCCACCCTCT
ATTTTCCTCAACACCAGGGTGATTACTAGGCTGAGAAGGGTGTCGGATGGCATTTTTATT
AGAAACGTGGTGTCTCCAAGAGCTTTTATGTCATCAAGCGTTACTACTGAGGCTTTTCAA
GAAAATACTAAGTCAAAAGCTTATGGTTCTGAGCAAATTCAGGTATTGGAAGGTCTGGAT
CCTGTCAGAAAAAGACCAGGAATGTACATAGGAAGCACAGGCCCTCGTGGTCTCCACCAT
TTGGTTTATGAAATTTTGGATAATGCCGTTGATGAGGCACAAGCAGGATTCGCGACAAAG
ATAGATGTGGTCCTCCATGCTGATAACTCTGTTGGCATCACTGACAATGGCCGTGGGATT
CCAACAGAGTTGCATCCAGTGACAAAGAAATCTTCTCTTGAAACAGTCTTGACGGTTTTG
CATGCAGGTGGTAAATTTGGAGGCTCAAGTAGTGGCTATAGTGTGTCTGGTGGATTACAT
GGTGTGGGCTTGTCAGTTGTTAATGCATTGTCAGAGGCCCTAGAAGTTACCATATGGCGT
GATGGTAAAGAATATCAACAGAAATATTCACGGGGGAAGCCAGTAACAACTTTGATATGT
CAGGAGCTCCCGGTGGAAATTAAAGATTGGCAAGGGACTTCCATTCGGTTTTGGCCTGAT
AAAGAAGTATTCACAACTGAAATACAATTTGACTATAATACCATAGCTGGGAGAATTAGG
GAGCTTGCTTTCCTCAATCCCGAGCTCACTATTGTTCTCAAGAAGGACGACATAGATCCG
GAAAAGATCCAACATGCTGAGTACTTTTATGCTGGAGGATTGGTTGAATATGTGAAATGG
CTGAATGCAGACAAAAAACCACTTCATGATGTGTTGGGATTCAGAAAAGAAGCAGATGGA
ATCACAATTGATATGGCTCTTCAATGGTGCTCAGATGCTTATTCAGACACAGTGCTAGGT
TATGCAAACAGCATACGGACGATTGATGGTGGCACTCACATAGATGGTGTGAAAGCTGCC
CTAACAAGAACCCTCAACAGTTTGGGAAAGAAGTCAAAGACAATCAAGGAGAAGGATATA
AACTTAAGCGGCGAGCATGTAAGAGAGGGGTTAACTTGTGTTATCTCTGTTAAAGTTCCG
AATCCAGAATTTGAAGGACAAACTAAGACTAGGCTGGGAAATCCTGAGGTAAGAAAGGTG
GTCGATCAGTCAGTTCAAGAGTATCTGACTGAGTATCTGGAATTGCATCCAGATGTGCTA
GATTCAATTCTTTCCAAGTCATTAAATGCTCTAAAGGCAGCTCTTGCAGCAAAGAGGGCT
CGGGAGTTGGTGAGACAGAAAAGTGTCTTAAGATCATCCTCTCTTCCAGGGAAGCTTGCT
GATTGTTCAGCCACAAATCCTGAAGAAGCTGAAATTTTCATCGTTGAGGGTGATTCAGCT
GGTGGAAGTGCAAAACAAGGTCGTGATCGGCGCTTTCAGGCTATTCTTCCTTTGAGAGGC
AAAATTTTGAATATTGAGAGAAAGGATGAAGCAGCTATGTATAAAAATGAAGAGATTCAA
AATCTTATTCTTGGTTTAGGACTTGGAGTTAAGGGGGAGGATTTTAAAAAGGAAGCTCTC
CGTTATCATAAGATCATAATTTTAACAGATGCCGATGTTGATGGTGCTCATATTCGAACA
TTGTTGTTGACATTTTTCTTTAGATATCAGAGAGCTCTTTTTGAAGAAGGTTGCATTTAT
GTTGGTGTTCCACCTCTCTATAAGGTTGAAAGGGGAAAACAAGCATACTACTGCTATGAT
GATGTAGAACTTAAAAAGGTCCAGCGTTCCTTTCCTTCAAATGCATCATATAACATACAG
AGGTTCAAAGGATTGGGAGAAATGATGCCAGCACAGTTATGGGAAACAACAATGAACCCA
GAGACTAGGCTGTTAAAGCAATTAGTAGTGGAGGATGCAGCTGAAGCAAATGTCGTCTTC
TCTTCACTAATGGGATCCAAGGTGGATGTTAGAAAGCAACTTATACAACATTCAGCGAGC
ATGATCAACCTTGAGCAACTGGATATATGA

Peptide Sequence

PEP ID

Solyc12g021230.2.1
PEP Infomation

DNA gyrase subunit B (AHRD V3.3 *** K4DDP2_SOLLC)
Sequence

MALLKPFPLQYSLRRMASRYLLHCHSHTLPFSSTFLSPPSIFLNTRVITRLRRVSDGIFI
RNVVSPRAFMSSSVTTEAFQENTKSKAYGSEQIQVLEGLDPVRKRPGMYIGSTGPRGLHH
LVYEILDNAVDEAQAGFATKIDVVLHADNSVGITDNGRGIPTELHPVTKKSSLETVLTVL
HAGGKFGGSSSGYSVSGGLHGVGLSVVNALSEALEVTIWRDGKEYQQKYSRGKPVTTLIC
QELPVEIKDWQGTSIRFWPDKEVFTTEIQFDYNTIAGRIRELAFLNPELTIVLKKDDIDP
EKIQHAEYFYAGGLVEYVKWLNADKKPLHDVLGFRKEADGITIDMALQWCSDAYSDTVLG
YANSIRTIDGGTHIDGVKAALTRTLNSLGKKSKTIKEKDINLSGEHVREGLTCVISVKVP
NPEFEGQTKTRLGNPEVRKVVDQSVQEYLTEYLELHPDVLDSILSKSLNALKAALAAKRA
RELVRQKSVLRSSSLPGKLADCSATNPEEAEIFIVEGDSAGGSAKQGRDRRFQAILPLRG
KILNIERKDEAAMYKNEEIQNLILGLGLGVKGEDFKKEALRYHKIIILTDADVDGAHIRT
LLLTFFFRYQRALFEEGCIYVGVPPLYKVERGKQAYYCYDDVELKKVQRSFPSNASYNIQ
RFKGLGEMMPAQLWETTMNPETRLLKQLVVEDAAEANVVFSSLMGSKVDVRKQLIQHSAS
MINLEQLDI*

Transcript Sequence

Transcript ID

Solyc12g021230.2.1
Transcript Infomation

DNA gyrase subunit B (AHRD V3.3 *** K4DDP2_SOLLC)
Sequence

CGGTCTATCTAAACTAATAAAATTTAAGTAATTTGCGCTTTTTCAATTTCACCAAAATTA
ATCAATTTTTGATGGGCCCATGATAAAAATGAGCCCAAACATTGGTTTCGCGCGTTGGCG
AACCTCGAAATTGAATAATAGGGTTTAGAGAGGGGATAAAGTAAAGAATTTATTCAAACA
AAATGTTTTACGACTCTTATCTTCTTCTTCTTCTTCATTGAAAAGTGAAGTTAAGCAATA
GTGTAGGCTTTGTGTTTGGGTAAATGTCTGAATGGCTCTGCTAAAACCATTTCCTCTTCA
ATACTCTCTTCGTCGCATGGCTTCTCGTTATCTTCTTCATTGTCACTCTCATACTCTTCC
CTTTTCTTCAACCTTTCTTTCTCCACCCTCTATTTTCCTCAACACCAGGGTGATTACTAG
GCTGAGAAGGGTGTCGGATGGCATTTTTATTAGAAACGTGGTGTCTCCAAGAGCTTTTAT
GTCATCAAGCGTTACTACTGAGGCTTTTCAAGAAAATACTAAGTCAAAAGCTTATGGTTC
TGAGCAAATTCAGGTATTGGAAGGTCTGGATCCTGTCAGAAAAAGACCAGGAATGTACAT
AGGAAGCACAGGCCCTCGTGGTCTCCACCATTTGGTTTATGAAATTTTGGATAATGCCGT
TGATGAGGCACAAGCAGGATTCGCGACAAAGATAGATGTGGTCCTCCATGCTGATAACTC
TGTTGGCATCACTGACAATGGCCGTGGGATTCCAACAGAGTTGCATCCAGTGACAAAGAA
ATCTTCTCTTGAAACAGTCTTGACGGTTTTGCATGCAGGTGGTAAATTTGGAGGCTCAAG
TAGTGGCTATAGTGTGTCTGGTGGATTACATGGTGTGGGCTTGTCAGTTGTTAATGCATT
GTCAGAGGCCCTAGAAGTTACCATATGGCGTGATGGTAAAGAATATCAACAGAAATATTC
ACGGGGGAAGCCAGTAACAACTTTGATATGTCAGGAGCTCCCGGTGGAAATTAAAGATTG
GCAAGGGACTTCCATTCGGTTTTGGCCTGATAAAGAAGTATTCACAACTGAAATACAATT
TGACTATAATACCATAGCTGGGAGAATTAGGGAGCTTGCTTTCCTCAATCCCGAGCTCAC
TATTGTTCTCAAGAAGGACGACATAGATCCGGAAAAGATCCAACATGCTGAGTACTTTTA
TGCTGGAGGATTGGTTGAATATGTGAAATGGCTGAATGCAGACAAAAAACCACTTCATGA
TGTGTTGGGATTCAGAAAAGAAGCAGATGGAATCACAATTGATATGGCTCTTCAATGGTG
CTCAGATGCTTATTCAGACACAGTGCTAGGTTATGCAAACAGCATACGGACGATTGATGG
TGGCACTCACATAGATGGTGTGAAAGCTGCCCTAACAAGAACCCTCAACAGTTTGGGAAA
GAAGTCAAAGACAATCAAGGAGAAGGATATAAACTTAAGCGGCGAGCATGTAAGAGAGGG
GTTAACTTGTGTTATCTCTGTTAAAGTTCCGAATCCAGAATTTGAAGGACAAACTAAGAC
TAGGCTGGGAAATCCTGAGGTAAGAAAGGTGGTCGATCAGTCAGTTCAAGAGTATCTGAC
TGAGTATCTGGAATTGCATCCAGATGTGCTAGATTCAATTCTTTCCAAGTCATTAAATGC
TCTAAAGGCAGCTCTTGCAGCAAAGAGGGCTCGGGAGTTGGTGAGACAGAAAAGTGTCTT
AAGATCATCCTCTCTTCCAGGGAAGCTTGCTGATTGTTCAGCCACAAATCCTGAAGAAGC
TGAAATTTTCATCGTTGAGGGTGATTCAGCTGGTGGAAGTGCAAAACAAGGTCGTGATCG
GCGCTTTCAGGCTATTCTTCCTTTGAGAGGCAAAATTTTGAATATTGAGAGAAAGGATGA
AGCAGCTATGTATAAAAATGAAGAGATTCAAAATCTTATTCTTGGTTTAGGACTTGGAGT
TAAGGGGGAGGATTTTAAAAAGGAAGCTCTCCGTTATCATAAGATCATAATTTTAACAGA
TGCCGATGTTGATGGTGCTCATATTCGAACATTGTTGTTGACATTTTTCTTTAGATATCA
GAGAGCTCTTTTTGAAGAAGGTTGCATTTATGTTGGTGTTCCACCTCTCTATAAGGTTGA
AAGGGGAAAACAAGCATACTACTGCTATGATGATGTAGAACTTAAAAAGGTCCAGCGTTC
CTTTCCTTCAAATGCATCATATAACATACAGAGGTTCAAAGGATTGGGAGAAATGATGCC
AGCACAGTTATGGGAAACAACAATGAACCCAGAGACTAGGCTGTTAAAGCAATTAGTAGT
GGAGGATGCAGCTGAAGCAAATGTCGTCTTCTCTTCACTAATGGGATCCAAGGTGGATGT
TAGAAAGCAACTTATACAACATTCAGCGAGCATGATCAACCTTGAGCAACTGGATATATG
AATGTGTATGTAGTAAACCCTGCAAGAACACAAATCATTCCATCTGGGATGGACTAAATA
CCTTGTATCCTTTTATTGCACAACGGGGAGCTGCAGTATAATTTTGATAACTGAATGGTG
GGGCTTTTGAGGCACTTTCTTCTCCAGTTCGCCGTGGAACATTCAGAGTAAGCAGAAAAG
GATTTGGATTATAAGTATCAAGTACCTTGCCATACATCATAGGCTTTTGACCTCCCTTAT
TTTGCTTTTGTTACCTGTAATTTGCACTCGTCCTATGTAATTTAACATTTTTAGTTAGCA
ACGTGGCATACATATTGATGTAAGTAAGGGTTGAGGGTTGTACTGATGAGAAAGGTGAGG
CCACTCCTCTCGAAGACTGCCAAAAATATCAAAGCTTGATGCTTTACATTAACACTTGTA
GGAGCAAAGGGATGTTTAAAAAATTAAAATCTGAAAAATGCAAGTCTTGTTATTTTAGTT
CCATG