Plant GARDEN
How To ▶︎

JA

EN

TOP > About the Species(Solanum lycopersicum ) > genome data >Gene sequences

Search

By Species By Keywords Genes By Markers By Traits

Let’s Analyze!!

SNP Detection
(lang=JA only) Sequences Other Tools

Data List

All Markers Trait-Related Loci
Solanum lycopersicum

CDS Sequence

CDS ID

Solyc12g021130.2.1
CDS Infomation

Reticulon-like protein (AHRD V3.3 *** K4DDN2_SOLLC)
Sequence

ATGGCGATTGTGGAGGAAGGTAAGGAGTTTGAGATGTGCGTTGTGTTCGGTGGTCGAGGA
TTCATCGGGAAACCGCTTGTCGATAGGCTTCTTCGACTCGGCAATTGGATCGTACGAATC
GCCGATTCTTTCCCCACTATTCAACTTGAACCCTCTGAGTCCCTCCTTTCCCATGCCCTT
TCTTCTGGACGCGCTTCATATTTCCATGTCGATGTTCGTCATAAATCCAATATTATTACA
GCTATTGATGGTGCATCAGTTGTATTCTACATGGATGCTAGGGACTCATACGGTCATGAT
TTTTATATTAGCTACACAATTGTTGTTCAAGGTGCCAAGAATATCATTGCTGCCTGTCAA
GAGTGTAAAGTCAAAAGGCTATTATACAACAGTTCTGCTGATGTAGTTTTGAACAGCTGG
CAGGATATAAATGGTGGGGATGAGTCCTTACCATATTCCAGTAAATTTGTGAACATGGTA
ACTGATCTTAAGGCTCAAGCAGAGGCTCTAGTTTTAGTTGCAAATGATGCTGATGGCCTT
CTTACTTGCGCACTTCGTCCCAGCTATGCTTTTGGACCCGGAGACAATTATCTCTCTTCT
TTGCTGGTCGGTGTTGCAAAATCTGGCTGGGGCAAGTTTATTATAGGACTTGGTGACAAT
ATGACCGACTTCACCTATGTGGAGAATGTTGCCTATGCACATATATGTGCAGACAAAGCT
CTAAATTCTAGGGGGAGTCATGTATGTGGCAAGGCCTTTTTCATCACTAATCTCAAGCCG
ATGAAGTTCAAGGATTTTGTATCTCTTGTATTTCAGAGATTGGGATATCAAAGGTCGATT
ATCAAGATTCCTGATATGGTTACCCAATATGTTACTTTGATCATAAAATGGACTGTTTCA
AGGATGAGCAACTGGAGTACCGAGAATGTTCCAGTTTTTGATATTATTGAATTAGCATTG
TGCCATAGGAAATTTAATTGCTCGGCAGCTCAGAAATATATTGGATATTCTCCAGTTGTT
TCCCTTGAAGAAGGAGTTGCTGTAACCGCTAAGTCCTCTCAATTAACCAGAGAGTCATCT
TTCTCAAGCTATAGTGACACCGATGAGGAGTCAAAAGTGCATAAACTTCTAGGAGGTGGA
AAAGTTGCAGAAATCTTACTGTGGAGAGATGAGCAGAGAACATTTACTTGTTTTCTTTTG
CTGGTTTTCATCCATTACTGGTTCTTTCTGTCCGGGAGGAGTTTTCTTTCATCTCTTTCC
CAGCTTTTACTAATGATTGCTGTTGCTCTCTGGGGATACAGCATTCTGCCACCAACAATA
TATGGGATTTCAGTTCCCAGAATATCATGGTCCTTCTTTGAGATCTCTGAAGTGGATATG
AGAAATTGCTTTTACAACGTAGCATATATGTGGAACAGAGTGAGTCATTTAGCAAAATTA
CTTGCCCAAGGAGAGGATTGGCATATATTTCTGAAGGCTGCAATACCCCTATATGTTTTG
AAGTTGGTTATTTCGGATTGCTTGACTTTTGCACTTGGTGTAGCACTAGCACTGGCATTC
ACTTCATTCCTCATTTATGAGCAGTATGAGGATGAAATTGATAGTACAGCAAATGTAATA
TTCAGCATATTAAAAGTTGCCTTTACCCTGCTGATGAGGAGGTTACCCTTGCCTCAGGCA
TTGCTGTATTCTGATTCAGAAATCGGATCTTCTAGATTGAATATCAAGCAATGA

Peptide Sequence

PEP ID

Solyc12g021130.2.1
PEP Infomation

Reticulon-like protein (AHRD V3.3 *** K4DDN2_SOLLC)
Sequence

MAIVEEGKEFEMCVVFGGRGFIGKPLVDRLLRLGNWIVRIADSFPTIQLEPSESLLSHAL
SSGRASYFHVDVRHKSNIITAIDGASVVFYMDARDSYGHDFYISYTIVVQGAKNIIAACQ
ECKVKRLLYNSSADVVLNSWQDINGGDESLPYSSKFVNMVTDLKAQAEALVLVANDADGL
LTCALRPSYAFGPGDNYLSSLLVGVAKSGWGKFIIGLGDNMTDFTYVENVAYAHICADKA
LNSRGSHVCGKAFFITNLKPMKFKDFVSLVFQRLGYQRSIIKIPDMVTQYVTLIIKWTVS
RMSNWSTENVPVFDIIELALCHRKFNCSAAQKYIGYSPVVSLEEGVAVTAKSSQLTRESS
FSSYSDTDEESKVHKLLGGGKVAEILLWRDEQRTFTCFLLLVFIHYWFFLSGRSFLSSLS
QLLLMIAVALWGYSILPPTIYGISVPRISWSFFEISEVDMRNCFYNVAYMWNRVSHLAKL
LAQGEDWHIFLKAAIPLYVLKLVISDCLTFALGVALALAFTSFLIYEQYEDEIDSTANVI
FSILKVAFTLLMRRLPLPQALLYSDSEIGSSRLNIKQ*

Transcript Sequence

Transcript ID

Solyc12g021130.2.1
Transcript Infomation

Reticulon-like protein (AHRD V3.3 *** K4DDN2_SOLLC)
Sequence

AGGTATGCACCAACTCCCATTTCTACTTCAAACTCGTAATATTTTTCTCTTTCTAAAAAA
ACGATTCCTTACCATTTCAATAAAACCCTTTCCCTTCTCCCTCTCTCTCTCTAAAAGAAG
TCGATCCCTTTGTTGAAAAGGGAAAGGAGGAGAAAACAATGGCGATTGTGGAGGAAGGTA
AGGAGTTTGAGATGTGCGTTGTGTTCGGTGGTCGAGGATTCATCGGGAAACCGCTTGTCG
ATAGGCTTCTTCGACTCGGCAATTGGATCGTACGAATCGCCGATTCTTTCCCCACTATTC
AACTTGAACCCTCTGAGTCCCTCCTTTCCCATGCCCTTTCTTCTGGACGCGCTTCATATT
TCCATGTCGATGTTCGTCATAAATCCAATATTATTACAGCTATTGATGGTGCATCAGTTG
TATTCTACATGGATGCTAGGGACTCATACGGTCATGATTTTTATATTAGCTACACAATTG
TTGTTCAAGGTGCCAAGAATATCATTGCTGCCTGTCAAGAGTGTAAAGTCAAAAGGCTAT
TATACAACAGTTCTGCTGATGTAGTTTTGAACAGCTGGCAGGATATAAATGGTGGGGATG
AGTCCTTACCATATTCCAGTAAATTTGTGAACATGGTAACTGATCTTAAGGCTCAAGCAG
AGGCTCTAGTTTTAGTTGCAAATGATGCTGATGGCCTTCTTACTTGCGCACTTCGTCCCA
GCTATGCTTTTGGACCCGGAGACAATTATCTCTCTTCTTTGCTGGTCGGTGTTGCAAAAT
CTGGCTGGGGCAAGTTTATTATAGGACTTGGTGACAATATGACCGACTTCACCTATGTGG
AGAATGTTGCCTATGCACATATATGTGCAGACAAAGCTCTAAATTCTAGGGGGAGTCATG
TATGTGGCAAGGCCTTTTTCATCACTAATCTCAAGCCGATGAAGTTCAAGGATTTTGTAT
CTCTTGTATTTCAGAGATTGGGATATCAAAGGTCGATTATCAAGATTCCTGATATGGTTA
CCCAATATGTTACTTTGATCATAAAATGGACTGTTTCAAGGATGAGCAACTGGAGTACCG
AGAATGTTCCAGTTTTTGATATTATTGAATTAGCATTGTGCCATAGGAAATTTAATTGCT
CGGCAGCTCAGAAATATATTGGATATTCTCCAGTTGTTTCCCTTGAAGAAGGAGTTGCTG
TAACCGCTAAGTCCTCTCAATTAACCAGAGAGTCATCTTTCTCAAGCTATAGTGACACCG
ATGAGGAGTCAAAAGTGCATAAACTTCTAGGAGGTGGAAAAGTTGCAGAAATCTTACTGT
GGAGAGATGAGCAGAGAACATTTACTTGTTTTCTTTTGCTGGTTTTCATCCATTACTGGT
TCTTTCTGTCCGGGAGGAGTTTTCTTTCATCTCTTTCCCAGCTTTTACTAATGATTGCTG
TTGCTCTCTGGGGATACAGCATTCTGCCACCAACAATATATGGGATTTCAGTTCCCAGAA
TATCATGGTCCTTCTTTGAGATCTCTGAAGTGGATATGAGAAATTGCTTTTACAACGTAG
CATATATGTGGAACAGAGTGAGTCATTTAGCAAAATTACTTGCCCAAGGAGAGGATTGGC
ATATATTTCTGAAGGCTGCAATACCCCTATATGTTTTGAAGTTGGTTATTTCGGATTGCT
TGACTTTTGCACTTGGTGTAGCACTAGCACTGGCATTCACTTCATTCCTCATTTATGAGC
AGTATGAGGATGAAATTGATAGTACAGCAAATGTAATATTCAGCATATTAAAAGTTGCCT
TTACCCTGCTGATGAGGAGGTTACCCTTGCCTCAGGCATTGCTGTATTCTGATTCAGAAA
TCGGATCTTCTAGATTGAATATCAAGCAATGAGGTGTGTTAATGCTTTACTCAGTCGTAA
CAGCATACAGAGTAAGAGTGGTGTACATCTTCTGGCTCAGTTTCCTTATTTAGATTGTGT
GACCTCTTGTACAAGTAGTTTGTTTACCTAATATGTAAAGGGTCGGTTGATCTGTATCCA
ATTGAGAAACTCAAGTCCCCCACCACCTCATTCCTCCCATACCCTAACACTAGGGCTACA
AAAAATTTGGGAAGTTCAAAAGAAAAGAAATAAGACTCTTTGAGGATAGTCTTTGCCCTT
TCTGGCTGAGATGACAACATAGTGGATGAATGCTCTGCTTGGATACAAATTATGCTTGCC
AATTTCTTATGTTGTGATTATTACAATGCCCTTTTAATGTTATACCCGAAGAAAAAATGA
TATCTTTTTAGAGAAGAAACCCATCTTGTAGAAGGGTGCATCTTTCAAATTACCTTTCTG
CTTATTTTGTTTTTAA