Plant GARDEN
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TOP > About the Species(Solanum lycopersicum ) > genome data >Gene sequences

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SNP Detection
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Data List

All Markers Trait-Related Loci
Solanum lycopersicum

CDS Sequence

CDS ID

Solyc12g019290.1.1
CDS Infomation

Pentatricopeptide repeat-containing protein (AHRD V3.3 *** A0A124SBF4_CYNCS)
Sequence

ATGGCTTCTTTGTGTGCATCAAGATCAGCCATTTTCAAACCGAAGAAGCTCCTCACAATT
TCGGCTACACCATTATGCCTAAGATCAACAATCTTCTTCTACAACACCGAATCTCTCAAC
AATCATGAACGAATTCCAAAAGGTAACAGTCCTAAACCCCAAGAAAAACTAGAAGATCTC
ATTTGCAGAATGATGTCTACTCGTGCCTGGACTACACGTTTACAGAATTCCATTAGAAAT
ATTGTTCCTTCATTTGATCATGAACTTGTTTACAATGTGTTACATAGTGCGAAAAATTCT
GAACATGCGTTGCAGTTCTTTAGGTGGGTTGAAAGATCTGGTCTTTTTAGGCATGATAGA
GAAACCCATTTTAAAATTATTCAAATTCTTGGTAGAGCTGAAAAGCTTAATCATGCTAGG
TGTATACTTCTTGACATGCCGAATAAGGGTGTTGATTGGGATGAGGATTTGTGGGTTTTG
ATGATTGATAGTTATGGTAAAGCTGGGATTGTTCAAGAGAGTGTTAAGTTGTTTCAGAAA
ATGGAAGAGTTAGGTGTTGAAAGGACTGTTAAATCGTATAATGCTTTGTTTAATGTGATA
ACTCGTCGAGGACGATATATGATGGCCAAGAGGTACTTTAATAGGATGGTTAATCAGGGC
ATTGAACCTACTGGACATACGTATAATCTTTTGATTTGGGGATTCTTTTTATCGTCAAAG
GTGGATACTGCAATTAGGTTTTTTGAGGATATGAAGGGTAAGGGGATTATGCCCGATGTA
GTAACTTATAATACTATGATTAATGGGTATAACTGCGTGAAGAAAATAGAAGAAGCAGAG
AAGTACTTTGTGGAAATGAAAGCAAGAAATATAGAGCCGAATGTCATCAGTTATACAACA
CTTATTAAAGGATATAGTGCGGTTGAGCGAATAGATGATGCATTGAAATTGTTTGAAGAG
ATGAAGAGTTTTGGTATTAAACCAAATGCTATTACTTATTCGACCTTGTTACCAGGGCTT
TGTGATGCTCAGAAAATGTCTGAAGCTGGAACGATTTTGAAAGAGATGGAAGAGAGGTAT
ATTGCACCCAAGGATAACTCTATCTTCATAAGGTTAATCTCTGGACAGTGTGAGGCAGGT
GATTTAGATGCTGCAGCTGATGTTCTGAAAACTATGATTAGGTTAAGTGTTCCCACAGAG
GCTGGACATTATGGTGTACTAATCGAGAATTTCTGCAAGGCTGGTATCTATGATCGAGCT
GTCAAATTTCTGGATAAGCTTATTGAGAAAGAAATCGTCCTGCGACCGCAGAGTAGTTCG
TCTATGGAAACAAGTGCATATAACCTGATTATTGATTACCTATGCAATAATGGCCAGACA
GGCAAGGCTGAAACTCTTTTTAGACAGTTGATGAAAACTGGGATTCAAGATCCTATTGCC
TTTAACAATCTTGTCTGTGGGCACTCAAGAGAAGGGGTTCCTGATTCAGCCTTTGAACTG
TTGAAGATTATGGGCAGAAGAAAGGTTCTTTCTGACAGTATTGCTCACAAATCACTTGTT
GAGAGCTATCTGAAGAAAGGGGAGCCTGCTGATGCTAAAGCTGCTTTGGACAATATGCTT
GAACATGGACATGACCCGGACTCATTGTTGTATAGATCAGTGATGGAGAGCCTGATGGGT
GATGGAAGGGTTCAAACAGCAAGTCGAGTGATGAAAATCATGTTGGAGAAGGGAGTGAAA
GAACACATGGATTTGATTTCTACCATCTTGGAAGCCCTCCTCATGAGGGGCCATGTTGAG
GAGGCCTTCGGAAGAATTGAATTGTTGTTGCACAACAGTCTTTCACCTGATCTCGATGGT
CTCTTATCAGTTTTATGTGAGAAAGGAAAAACTACTGCAGCTCTGAAGCTGTTAGATTTC
ATTTTAGAGCGAAATTGTAACATAGACTTTTCAAGTTATGATAAGGTGCTGGATTCTCTC
TTAGCTGCTGGGAAGACACTTAATGCCTATTCTATTTTGTGCAAGATGATGGAAAATGGA
GGAGTGAAAGATCACAAGAGTTGTGAAGAGTTAATTAAGAGCCTCAATGATGAGGGAAAC
ACAAAGCAAGCAGATATTCTTAGAAGAATGATACTCGGAAAGGAAACAACACTTGACAGC
AAGAAAGGGAAGAAAAAGACACCCATTGCTACCTGA

Peptide Sequence

PEP ID

Solyc12g019290.1.1
PEP Infomation

Pentatricopeptide repeat-containing protein (AHRD V3.3 *** A0A124SBF4_CYNCS)
Sequence

MASLCASRSAIFKPKKLLTISATPLCLRSTIFFYNTESLNNHERIPKGNSPKPQEKLEDL
ICRMMSTRAWTTRLQNSIRNIVPSFDHELVYNVLHSAKNSEHALQFFRWVERSGLFRHDR
ETHFKIIQILGRAEKLNHARCILLDMPNKGVDWDEDLWVLMIDSYGKAGIVQESVKLFQK
MEELGVERTVKSYNALFNVITRRGRYMMAKRYFNRMVNQGIEPTGHTYNLLIWGFFLSSK
VDTAIRFFEDMKGKGIMPDVVTYNTMINGYNCVKKIEEAEKYFVEMKARNIEPNVISYTT
LIKGYSAVERIDDALKLFEEMKSFGIKPNAITYSTLLPGLCDAQKMSEAGTILKEMEERY
IAPKDNSIFIRLISGQCEAGDLDAAADVLKTMIRLSVPTEAGHYGVLIENFCKAGIYDRA
VKFLDKLIEKEIVLRPQSSSSMETSAYNLIIDYLCNNGQTGKAETLFRQLMKTGIQDPIA
FNNLVCGHSREGVPDSAFELLKIMGRRKVLSDSIAHKSLVESYLKKGEPADAKAALDNML
EHGHDPDSLLYRSVMESLMGDGRVQTASRVMKIMLEKGVKEHMDLISTILEALLMRGHVE
EAFGRIELLLHNSLSPDLDGLLSVLCEKGKTTAALKLLDFILERNCNIDFSSYDKVLDSL
LAAGKTLNAYSILCKMMENGGVKDHKSCEELIKSLNDEGNTKQADILRRMILGKETTLDS
KKGKKKTPIAT*

Transcript Sequence

Transcript ID

Solyc12g019290.1.1
Transcript Infomation

Pentatricopeptide repeat-containing protein (AHRD V3.3 *** A0A124SBF4_CYNCS)
Sequence

ATGGCTTCTTTGTGTGCATCAAGATCAGCCATTTTCAAACCGAAGAAGCTCCTCACAATT
TCGGCTACACCATTATGCCTAAGATCAACAATCTTCTTCTACAACACCGAATCTCTCAAC
AATCATGAACGAATTCCAAAAGGTAACAGTCCTAAACCCCAAGAAAAACTAGAAGATCTC
ATTTGCAGAATGATGTCTACTCGTGCCTGGACTACACGTTTACAGAATTCCATTAGAAAT
ATTGTTCCTTCATTTGATCATGAACTTGTTTACAATGTGTTACATAGTGCGAAAAATTCT
GAACATGCGTTGCAGTTCTTTAGGTGGGTTGAAAGATCTGGTCTTTTTAGGCATGATAGA
GAAACCCATTTTAAAATTATTCAAATTCTTGGTAGAGCTGAAAAGCTTAATCATGCTAGG
TGTATACTTCTTGACATGCCGAATAAGGGTGTTGATTGGGATGAGGATTTGTGGGTTTTG
ATGATTGATAGTTATGGTAAAGCTGGGATTGTTCAAGAGAGTGTTAAGTTGTTTCAGAAA
ATGGAAGAGTTAGGTGTTGAAAGGACTGTTAAATCGTATAATGCTTTGTTTAATGTGATA
ACTCGTCGAGGACGATATATGATGGCCAAGAGGTACTTTAATAGGATGGTTAATCAGGGC
ATTGAACCTACTGGACATACGTATAATCTTTTGATTTGGGGATTCTTTTTATCGTCAAAG
GTGGATACTGCAATTAGGTTTTTTGAGGATATGAAGGGTAAGGGGATTATGCCCGATGTA
GTAACTTATAATACTATGATTAATGGGTATAACTGCGTGAAGAAAATAGAAGAAGCAGAG
AAGTACTTTGTGGAAATGAAAGCAAGAAATATAGAGCCGAATGTCATCAGTTATACAACA
CTTATTAAAGGATATAGTGCGGTTGAGCGAATAGATGATGCATTGAAATTGTTTGAAGAG
ATGAAGAGTTTTGGTATTAAACCAAATGCTATTACTTATTCGACCTTGTTACCAGGGCTT
TGTGATGCTCAGAAAATGTCTGAAGCTGGAACGATTTTGAAAGAGATGGAAGAGAGGTAT
ATTGCACCCAAGGATAACTCTATCTTCATAAGGTTAATCTCTGGACAGTGTGAGGCAGGT
GATTTAGATGCTGCAGCTGATGTTCTGAAAACTATGATTAGGTTAAGTGTTCCCACAGAG
GCTGGACATTATGGTGTACTAATCGAGAATTTCTGCAAGGCTGGTATCTATGATCGAGCT
GTCAAATTTCTGGATAAGCTTATTGAGAAAGAAATCGTCCTGCGACCGCAGAGTAGTTCG
TCTATGGAAACAAGTGCATATAACCTGATTATTGATTACCTATGCAATAATGGCCAGACA
GGCAAGGCTGAAACTCTTTTTAGACAGTTGATGAAAACTGGGATTCAAGATCCTATTGCC
TTTAACAATCTTGTCTGTGGGCACTCAAGAGAAGGGGTTCCTGATTCAGCCTTTGAACTG
TTGAAGATTATGGGCAGAAGAAAGGTTCTTTCTGACAGTATTGCTCACAAATCACTTGTT
GAGAGCTATCTGAAGAAAGGGGAGCCTGCTGATGCTAAAGCTGCTTTGGACAATATGCTT
GAACATGGACATGACCCGGACTCATTGTTGTATAGATCAGTGATGGAGAGCCTGATGGGT
GATGGAAGGGTTCAAACAGCAAGTCGAGTGATGAAAATCATGTTGGAGAAGGGAGTGAAA
GAACACATGGATTTGATTTCTACCATCTTGGAAGCCCTCCTCATGAGGGGCCATGTTGAG
GAGGCCTTCGGAAGAATTGAATTGTTGTTGCACAACAGTCTTTCACCTGATCTCGATGGT
CTCTTATCAGTTTTATGTGAGAAAGGAAAAACTACTGCAGCTCTGAAGCTGTTAGATTTC
ATTTTAGAGCGAAATTGTAACATAGACTTTTCAAGTTATGATAAGGTGCTGGATTCTCTC
TTAGCTGCTGGGAAGACACTTAATGCCTATTCTATTTTGTGCAAGATGATGGAAAATGGA
GGAGTGAAAGATCACAAGAGTTGTGAAGAGTTAATTAAGAGCCTCAATGATGAGGGAAAC
ACAAAGCAAGCAGATATTCTTAGAAGAATGATACTCGGAAAGGAAACAACACTTGACAGC
AAGAAAGGGAAGAAAAAGACACCCATTGCTACCTGA