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TOP > About the Species(Solanum lycopersicum ) > genome data >Gene sequences

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SNP Detection
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Data List

All Markers Trait-Related Loci
Solanum lycopersicum

CDS Sequence

CDS ID

Solyc12g019220.1.1
CDS Infomation

Pectin lyase-like superfamily protein (AHRD V3.3 *** AT3G59850.2)
Sequence

ATGATGCTAATCACCAAGAAACATATGTCTCTTCTTGTTCTAGTTATCATGTATCTCTTC
CATTTATCATCGGGGATGAAGATTACATACAATGTTCAGAGCTACGGAGCCAAACCTGAT
GGAAAAACGGATTCAACGAAAGCGTTCCTGAATGCATGGGGTGCAGCTTGTGCTTCCACA
AAGTCCGTCATGATATATGTACCACAAGGAAGGTATTTACTGGCAAATGCTGCATTTTGG
GGACAAAATTGCAAGAACAAAGATACTACAATAAAGATTGATGGTACTTTAGTGGCTCCC
TCTAATTATAATGTTATAGGTAATACTGGAAATTGGCTAAAGTTTGAGAGAGTTAATGGA
CTTAAAATATCTGGTGGAACTTTTGATGGTCAAGGTGCTAATCTTTGGACTTGTAAAACC
TCTGGCAAAAGTTGTCCTAATGGTGCAACGACACTTGCGTTTTACAATTCAAACAACATA
GTGATAAGTGGATTGACTTCATTAAACAGCCAGATGTTCCATATGGTTATAGATGGATGC
CAAAATGCTAAGCTGCAGAACATGAAAATTTCAGCCTCAGCTAACAGCCCAAACACAGAT
GGGATTCATATAGCAGCTTCTACTGGTGTCACCATTTTGAAAGCAGTAATTGGTACCGGC
GATGACTGCATATCAATAGGCCCTGGTACGTCAAATTTGTGGATTGAAAATGTCTCTTGT
GGCCCTGGCCATGGCATAAGCATCGGAAGTCTGGGGTGGAGTATGCAAGAAGCAGGGGTT
CAAAATGTTACAGTGAAGGCGACTACATTTAGAGGTACTCAAAATGGATTGAGAATAAAG
ACATGGGCAAGGCCTAGTAATGGATTTGTGAAGGGTGTTCTGTTTCAACATTCGGTCATG
GTGAATGCTAGATATCCAATCTTAATTGATCAAGAATATTGCCCTGATCAGAAGAATTGC
CCTGGCCAGGTATCAGGAGTTAAGATAAGCGATGTAACATATCAAGACATTCATGGAACA
TCGACATCCCAAGTTGCGCTTAAACTTGCTTGCAGTGAGGCAAATCCCTGCCAAGGGATT
AGACTGGAAGATGTTAATCTATCCTTTAAAAATCAACAAGCACAAGCGTTATGCTCGAAT
GCTGCTGGAACTTCCTATGGTGTAAATAAACCAGGAAGTTGTTTGTAA

Peptide Sequence

PEP ID

Solyc12g019220.1.1
PEP Infomation

Pectin lyase-like superfamily protein (AHRD V3.3 *** AT3G59850.2)
Sequence

MMLITKKHMSLLVLVIMYLFHLSSGMKITYNVQSYGAKPDGKTDSTKAFLNAWGAACAST
KSVMIYVPQGRYLLANAAFWGQNCKNKDTTIKIDGTLVAPSNYNVIGNTGNWLKFERVNG
LKISGGTFDGQGANLWTCKTSGKSCPNGATTLAFYNSNNIVISGLTSLNSQMFHMVIDGC
QNAKLQNMKISASANSPNTDGIHIAASTGVTILKAVIGTGDDCISIGPGTSNLWIENVSC
GPGHGISIGSLGWSMQEAGVQNVTVKATTFRGTQNGLRIKTWARPSNGFVKGVLFQHSVM
VNARYPILIDQEYCPDQKNCPGQVSGVKISDVTYQDIHGTSTSQVALKLACSEANPCQGI
RLEDVNLSFKNQQAQALCSNAAGTSYGVNKPGSCL*

Transcript Sequence

Transcript ID

Solyc12g019220.1.1
Transcript Infomation

Pectin lyase-like superfamily protein (AHRD V3.3 *** AT3G59850.2)
Sequence

ATGATGCTAATCACCAAGAAACATATGTCTCTTCTTGTTCTAGTTATCATGTATCTCTTC
CATTTATCATCGGGGATGAAGATTACATACAATGTTCAGAGCTACGGAGCCAAACCTGAT
GGAAAAACGGATTCAACGAAAGCGTTCCTGAATGCATGGGGTGCAGCTTGTGCTTCCACA
AAGTCCGTCATGATATATGTACCACAAGGAAGGTATTTACTGGCAAATGCTGCATTTTGG
GGACAAAATTGCAAGAACAAAGATACTACAATAAAGATTGATGGTACTTTAGTGGCTCCC
TCTAATTATAATGTTATAGGTAATACTGGAAATTGGCTAAAGTTTGAGAGAGTTAATGGA
CTTAAAATATCTGGTGGAACTTTTGATGGTCAAGGTGCTAATCTTTGGACTTGTAAAACC
TCTGGCAAAAGTTGTCCTAATGGTGCAACGACACTTGCGTTTTACAATTCAAACAACATA
GTGATAAGTGGATTGACTTCATTAAACAGCCAGATGTTCCATATGGTTATAGATGGATGC
CAAAATGCTAAGCTGCAGAACATGAAAATTTCAGCCTCAGCTAACAGCCCAAACACAGAT
GGGATTCATATAGCAGCTTCTACTGGTGTCACCATTTTGAAAGCAGTAATTGGTACCGGC
GATGACTGCATATCAATAGGCCCTGGTACGTCAAATTTGTGGATTGAAAATGTCTCTTGT
GGCCCTGGCCATGGCATAAGCATCGGAAGTCTGGGGTGGAGTATGCAAGAAGCAGGGGTT
CAAAATGTTACAGTGAAGGCGACTACATTTAGAGGTACTCAAAATGGATTGAGAATAAAG
ACATGGGCAAGGCCTAGTAATGGATTTGTGAAGGGTGTTCTGTTTCAACATTCGGTCATG
GTGAATGCTAGATATCCAATCTTAATTGATCAAGAATATTGCCCTGATCAGAAGAATTGC
CCTGGCCAGGTATCAGGAGTTAAGATAAGCGATGTAACATATCAAGACATTCATGGAACA
TCGACATCCCAAGTTGCGCTTAAACTTGCTTGCAGTGAGGCAAATCCCTGCCAAGGGATT
AGACTGGAAGATGTTAATCTATCCTTTAAAAATCAACAAGCACAAGCGTTATGCTCGAAT
GCTGCTGGAACTTCCTATGGTGTAAATAAACCAGGAAGTTGTTTGTAA