Plant GARDEN
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TOP > About the Species(Solanum lycopersicum ) > genome data >Gene sequences

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SNP Detection
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Data List

All Markers Trait-Related Loci
Solanum lycopersicum

CDS Sequence

CDS ID

Solyc12g019180.2.1
CDS Infomation

polygalacturonase 7
Sequence

ATGAGTTACATTATTCTTTTCCCACTTATTCTCACAAACATAATCATCTTTTTATTATTC
AATTCATCTTCAGCTGCAAATTCCATGTACAATGTCCAAACTTATGGAGCCAACTCCGAT
GGAAAATCGGATTCATCCAACGCGTTCGTTAGTGCATGGACTGCAGCGTGTGCATCTACT
AGCGCGGCCACTATTTACGTCCCAAAGGGAAGTTATCTATTGAACAATGTATATTTCTTT
GGCCAATCGTGCAAGAGTAATGACATAACGATACATATTGAAGGCACACTTATAGCTCCT
TCTGATTATAACGTTATTGGTAAATCTGGTAACTGGATTAAATTTGAACGAGTCAATGGA
GTTTCCATCGTTGGTGGAACACTAGATGGACAAGGTACGCGTCTTTGGACGTGCAAAAAC
TCTGGCAAAGGTTGTCCCAAAGGAGCCACGACGTTAGCTTTTTACAATTCAAATGACATT
ACAATAAGTGGATTGACTTCAAAAGACAGTCAAATGTTCCACATTTTGTTAGATGGATGT
CATAATGCAAAGTTACAAGGAGTGAAGATTTCAGCACCTGGAAATAGTCCAAACACTGAT
GGAATTCATTTACAATCATCTTCTGATGTTACTATCTTGAATTCTCAAATTGGGACTGGT
GATGATTGTATCTCAATTGGTCCTGGAAACTCCAACTTGTGGTTTGAAAACATTGCTTGT
GGTCCCGGCCATGGAATAAGCATTGGGAGCTTAGGTTGGGAGATGCAAGAGGCAGGAGTA
CAAAATGTGACAGTTAAAACATCATCATTTACTGGGACTGAGAATGGTGTGAGAGTCAAA
ACATGGGCTAGGCCTAGCAATGGCTTTGTTAGGAATGTACTTTTTCAACATGTAGTCATG
AATAATGTCCAAAATCCCATCATCATTGATCAAAATTACTGCCCTAATAGTGGAAATTGT
CCTGAGCAGGGTTCAGGCATCAAGGTTAGTGATATAACATATGAAGACGTACATGGAACA
TCAGCTACAGAAGTTGCAGTAAAATTCGATTGTAGCAAAACAAATCCATGTAATGGAATA
AAATTATTGGATGTTAAACTAAGTTATAAGGATCATCCATCTGAAGCTTCATGTGTTAAT
GCTGGAGGAATGGCTTCTGGTCTACAACAACCTACTAGCTGCTTACAAATTTGA

Peptide Sequence

PEP ID

Solyc12g019180.2.1
PEP Infomation

polygalacturonase 7
Sequence

MSYIILFPLILTNIIIFLLFNSSSAANSMYNVQTYGANSDGKSDSSNAFVSAWTAACAST
SAATIYVPKGSYLLNNVYFFGQSCKSNDITIHIEGTLIAPSDYNVIGKSGNWIKFERVNG
VSIVGGTLDGQGTRLWTCKNSGKGCPKGATTLAFYNSNDITISGLTSKDSQMFHILLDGC
HNAKLQGVKISAPGNSPNTDGIHLQSSSDVTILNSQIGTGDDCISIGPGNSNLWFENIAC
GPGHGISIGSLGWEMQEAGVQNVTVKTSSFTGTENGVRVKTWARPSNGFVRNVLFQHVVM
NNVQNPIIIDQNYCPNSGNCPEQGSGIKVSDITYEDVHGTSATEVAVKFDCSKTNPCNGI
KLLDVKLSYKDHPSEASCVNAGGMASGLQQPTSCLQI*

Transcript Sequence

Transcript ID

Solyc12g019180.2.1
Transcript Infomation

polygalacturonase 7
Sequence

AATACCCTTTTTCAACTATTCCATTTCCTCACCACATTATAGAAAAAAACAAAAATGAGT
TACATTATTCTTTTCCCACTTATTCTCACAAACATAATCATCTTTTTATTATTCAATTCA
TCTTCAGCTGCAAATTCCATGTACAATGTCCAAACTTATGGAGCCAACTCCGATGGAAAA
TCGGATTCATCCAACGCGTTCGTTAGTGCATGGACTGCAGCGTGTGCATCTACTAGCGCG
GCCACTATTTACGTCCCAAAGGGAAGTTATCTATTGAACAATGTATATTTCTTTGGCCAA
TCGTGCAAGAGTAATGACATAACGATACATATTGAAGGCACACTTATAGCTCCTTCTGAT
TATAACGTTATTGGTAAATCTGGTAACTGGATTAAATTTGAACGAGTCAATGGAGTTTCC
ATCGTTGGTGGAACACTAGATGGACAAGGTACGCGTCTTTGGACGTGCAAAAACTCTGGC
AAAGGTTGTCCCAAAGGAGCCACGACGTTAGCTTTTTACAATTCAAATGACATTACAATA
AGTGGATTGACTTCAAAAGACAGTCAAATGTTCCACATTTTGTTAGATGGATGTCATAAT
GCAAAGTTACAAGGAGTGAAGATTTCAGCACCTGGAAATAGTCCAAACACTGATGGAATT
CATTTACAATCATCTTCTGATGTTACTATCTTGAATTCTCAAATTGGGACTGGTGATGAT
TGTATCTCAATTGGTCCTGGAAACTCCAACTTGTGGTTTGAAAACATTGCTTGTGGTCCC
GGCCATGGAATAAGCATTGGGAGCTTAGGTTGGGAGATGCAAGAGGCAGGAGTACAAAAT
GTGACAGTTAAAACATCATCATTTACTGGGACTGAGAATGGTGTGAGAGTCAAAACATGG
GCTAGGCCTAGCAATGGCTTTGTTAGGAATGTACTTTTTCAACATGTAGTCATGAATAAT
GTCCAAAATCCCATCATCATTGATCAAAATTACTGCCCTAATAGTGGAAATTGTCCTGAG
CAGGGTTCAGGCATCAAGGTTAGTGATATAACATATGAAGACGTACATGGAACATCAGCT
ACAGAAGTTGCAGTAAAATTCGATTGTAGCAAAACAAATCCATGTAATGGAATAAAATTA
TTGGATGTTAAACTAAGTTATAAGGATCATCCATCTGAAGCTTCATGTGTTAATGCTGGA
GGAATGGCTTCTGGTCTACAACAACCTACTAGCTGCTTACAAATTTGAATAAAATTATAA
GTATTTAAATTTATATTTACGTAGAACATTAAAATTATAGTCGTATATTATAGGAGTATT
TTTTTTAAAAAAATGACATTAGACTTGCTTGAGCCTATGGCCTTGCAAGATCATTGTTCT
AGTTCTTGAATATATTGGACGTGATCCATTACATTTAGTTAATCTCAAACATGCGTTTTG
GAGTTTGTTTTATGTTTCAATTATATGATATAACATGAAGTTTGAGGATCGAATAAGAAA
ATTTTTAATAATA