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TOP > About the Species(Solanum lycopersicum ) > genome data >Gene sequences

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SNP Detection
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Data List

All Markers Trait-Related Loci
Solanum lycopersicum

CDS Sequence

CDS ID

Solyc12g019130.2.1
CDS Infomation

Pectin lyase-like superfamily protein (AHRD V3.3 *** AT2G43880.1)
Sequence

ATGTACGACTTCAAAACTATGAAATTTACTAGTGTTTCTTGTTTTCTCTTCTTTTGTTTA
ATTATACTAATTATACCTTCTTGTTTAGCTTACAATGTGGTTAATTTTGGGGCTAGGGGA
GATGGTAGGACGGACTCAACCTGCGCTTTTCTTCGCGCTTGGTCTTCTGCCTGCCACTCT
ACTAGCCAACCTAACGTGTATATTCCACGAGGAACGTATTTGGTAAGGACGTTGAACTTA
AATGGACCTTGTAAGAGACGAGTTGAGTTCCGAATTGATGGTACTCTCGTTGCGCCGGTG
AATTATAATGCAATTGGAAATGCTGAGTTTTGGATTATGTTTTATAAGGTAAGTGGTGTT
AATGTGTATGGTGGAACTATTAATGCAAAGGGACATGGTTATTGGTCTTGTAGAAAAGGT
GGAAAGTCTTGTCCACAAGGAGCTAGGTCGATACAATTTATGTGGTGTAACAATGTACTG
TTGAAGGGTTTGACATCACTACACAGTCAAAGAGTACACATTGGAATTGGTTACAGCAGC
AATGTCAGAGTTGAGAATCTTAAGATAACAGCTCCAAGTGGAAGTCCAAACACCGACGGA
ATTCATGTTCAGAACTCAAGGGGGATTACTATTTATGACAGCATTATCAAGACCGGAGAT
GATTGTATATCTATTGGCCCTGCCTCCGCGAATATGTGGATTGAAAAAGTTGGGTGTGGC
CCTGGACATGGTATCAGCATTGGAAGTTTGGGACATAGTTTGAATGAAGATGGAGTAGCA
AATATCACAGTAGCAAATTCTGTTTTCACAAAGACACAAAATGGGGTTAGGATAAAATCA
TGGGCAAGACCAAGTGGTGGCTTTGCTACAAATATCATGTTTAGAAACCTTGTTATGAGG
AATGTTGGAAATCCCATTTTCATTGACCAAAACTATTGCCCTCATAATGTATGCCCTCGT
CAGAGTTCAGGAGTGAAGGTGAGCGACGTAACATTCAAGAATGTGAAGGGAACATCATCT
ACACAAGCAGCCATGAAATTTGATTGTAGTGCTTCAAATCCGTGCACCGGAATAAAATTA
CATGACATTAACTTAACTTACAATGATCGTTTGAGAAGGCCAGCCTTTGCTTACTGTAAA
AACGCAAGGGGACGTCATACTGGCAAAGTGTTTCCCAAAAGTTGCATATGA

Peptide Sequence

PEP ID

Solyc12g019130.2.1
PEP Infomation

Pectin lyase-like superfamily protein (AHRD V3.3 *** AT2G43880.1)
Sequence

MYDFKTMKFTSVSCFLFFCLIILIIPSCLAYNVVNFGARGDGRTDSTCAFLRAWSSACHS
TSQPNVYIPRGTYLVRTLNLNGPCKRRVEFRIDGTLVAPVNYNAIGNAEFWIMFYKVSGV
NVYGGTINAKGHGYWSCRKGGKSCPQGARSIQFMWCNNVLLKGLTSLHSQRVHIGIGYSS
NVRVENLKITAPSGSPNTDGIHVQNSRGITIYDSIIKTGDDCISIGPASANMWIEKVGCG
PGHGISIGSLGHSLNEDGVANITVANSVFTKTQNGVRIKSWARPSGGFATNIMFRNLVMR
NVGNPIFIDQNYCPHNVCPRQSSGVKVSDVTFKNVKGTSSTQAAMKFDCSASNPCTGIKL
HDINLTYNDRLRRPAFAYCKNARGRHTGKVFPKSCI*

Transcript Sequence

Transcript ID

Solyc12g019130.2.1
Transcript Infomation

Pectin lyase-like superfamily protein (AHRD V3.3 *** AT2G43880.1)
Sequence

CCACATAATAATTATGTGCACATGTACCGCCAATAAATATTCATTCGTTCGTACATGTCC
GTAGTATGTGACGTGTGTTTAGCATTCAAATTACTCTAAACATAAAAAAAAAAAAAAAAA
TCTATTGTCATGGTGGAGAATTTTTTTTAATCATATGGTCACAATTTGAATAACTATAAA
TATACACATGCATAATCTTCATTTTCATTATAACGACTTCTAAACAAGCACTCAACATAT
ATATGTACGACTTCAAAACTATGAAATTTACTAGTGTTTCTTGTTTTCTCTTCTTTTGTT
TAATTATACTAATTATACCTTCTTGTTTAGCTTACAATGTGGTTAATTTTGGGGCTAGGG
GAGATGGTAGGACGGACTCAACCTGCGCTTTTCTTCGCGCTTGGTCTTCTGCCTGCCACT
CTACTAGCCAACCTAACGTGTATATTCCACGAGGAACGTATTTGGTAAGGACGTTGAACT
TAAATGGACCTTGTAAGAGACGAGTTGAGTTCCGAATTGATGGTACTCTCGTTGCGCCGG
TGAATTATAATGCAATTGGAAATGCTGAGTTTTGGATTATGTTTTATAAGGTAAGTGGTG
TTAATGTGTATGGTGGAACTATTAATGCAAAGGGACATGGTTATTGGTCTTGTAGAAAAG
GTGGAAAGTCTTGTCCACAAGGAGCTAGGTCGATACAATTTATGTGGTGTAACAATGTAC
TGTTGAAGGGTTTGACATCACTACACAGTCAAAGAGTACACATTGGAATTGGTTACAGCA
GCAATGTCAGAGTTGAGAATCTTAAGATAACAGCTCCAAGTGGAAGTCCAAACACCGACG
GAATTCATGTTCAGAACTCAAGGGGGATTACTATTTATGACAGCATTATCAAGACCGGAG
ATGATTGTATATCTATTGGCCCTGCCTCCGCGAATATGTGGATTGAAAAAGTTGGGTGTG
GCCCTGGACATGGTATCAGCATTGGAAGTTTGGGACATAGTTTGAATGAAGATGGAGTAG
CAAATATCACAGTAGCAAATTCTGTTTTCACAAAGACACAAAATGGGGTTAGGATAAAAT
CATGGGCAAGACCAAGTGGTGGCTTTGCTACAAATATCATGTTTAGAAACCTTGTTATGA
GGAATGTTGGAAATCCCATTTTCATTGACCAAAACTATTGCCCTCATAATGTATGCCCTC
GTCAGAGTTCAGGAGTGAAGGTGAGCGACGTAACATTCAAGAATGTGAAGGGAACATCAT
CTACACAAGCAGCCATGAAATTTGATTGTAGTGCTTCAAATCCGTGCACCGGAATAAAAT
TACATGACATTAACTTAACTTACAATGATCGTTTGAGAAGGCCAGCCTTTGCTTACTGTA
AAAACGCAAGGGGACGTCATACTGGCAAAGTGTTTCCCAAAAGTTGCATATGA