Plant GARDEN
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TOP > About the Species(Solanum lycopersicum ) > genome data >Gene sequences

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SNP Detection
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Data List

All Markers Trait-Related Loci
Solanum lycopersicum

CDS Sequence

CDS ID

Solyc12g015650.2.1
CDS Infomation

U-box domain-containing protein 4 (AHRD V3.3 *** W9REK9_9ROSA)
Sequence

ATGTTGACGTCGTTTCAGTTAATCTTCTTCTTCTTTATCATACTCCTTTTTCCCATTTGC
TCATTCCTCAAACTCCAAACTGAGTTTTCCACAACGGATGATTGCTTTAATACAAATCCC
AAAGTGAGTTGTTTGCAATACTTTTACTTTATGCCTTCTTTTTATGTAGTTAGAGTAGTG
TTATACTCTGCTGCACCTGTTTTATGGTGCTATATATATCGCAAAGGAGGTTCATCAAAA
CAATTATGCCTATTAAATGTCGCGTTGATGTATGTTTGGAAGTTAACTTTCCTTCCTCTA
ATGTTTACATTTGTCATGGCCCAGTCTGGTAGAAAAACCGAAAAACTTGACATAAATTGG
GAACGAGCATTTGATCTTTATTTAAATGCAGTCGCATGTGACAATGAGCTTTTATGGGTC
CAAGCTACAACTACGCTTGCCAAATTGTCGAAACACGCGCCTGAGGATCTCTTAGCACGC
ACGATCCCTGTCCTTGTAGAGCTTCTTAGAAGGATCCCTTCCACTGATCTGAGTCCTTCA
ATTCAGGAAGCCGCTGCTCACTGCTTGAAATGTGTTGCTTGTCGAGGGGAAGGTAGATTG
GCTGTACTTATTGGTGAATCAGGTGCCATCCCTTCTCTTTTGAGTTTATTATTGCATGCT
GATGGGAGTTTGCGAAGGGTTTTATTGAAATGCCTTAGAAATAGTGTCACGTTTGCTGCT
CATAACCGTGAGATTGTAGTTAGACATGGTGGGCTGGAAATCATTCTCAATTTGTTGAAT
ACTTGCTCGGATGATCTAAAGCTATACTTACTAGAAATCCTCAGTGCATTGGCTCTTCTG
AGAGAAGTTAGGAGGACCATTTTGACTTCCAGGGGTGTTAGTTTTCTTGTTGAAGCTGCT
AGACGTGGCAGCATGGGATCTAGATGTAGAGCTGCTCAGGCAATTGGGTTGCTTGGATTG
GTCAAGAGAGCAAGGCGCACGCTTGTTGACTCGGGTACATTTTCAGTGCTTCTAGAACTA
CTTCAGGTTGGGGATACTTCAACTAAAGTCGTAGCTGCTAATGCACTTGGTGTGATCTCA
TCTCATGTTGATTACATTAGACCCCTTGCTAATGCTGGAGCTATTCCTCTTTACGCTGAG
CTTATGCAAGGAACTGATCCCATGGGTAAGGAGATTGCAGAGGATGTTTTTTGCATTCTA
GCAGTGGTAGAAGAGAATGGTGTAGCAATTGTTGAACACTTGGTTAGAATCCTTAGAGGA
GATAGTGCCGAATCTAAAGCTGCTGCTGCTGATGTATTATGGGATCTCGCAGGTTACAAG
CATTTGCCATCAGTTGTGCGAAATTCAGGTGCAATTCCTATTCTAGTTCAGTTGTTGGAA
GACGAAAATATTGATGTCCGGGAGAAGGTTTCTGGAGCTATCACTCAGTTGAGTTACAAT
GAAGCTGATAGAGCTGCTCTTGCAAATTCTGGAGCTATTCCACGATTAGTAGATATGTTA
CAGGATGAGTCGGAGGAAATGAGAGACAATGCTGCAGAAGCTCTTGTCAATTTCTCAGAG
GATCCGTCGCTAGGTGATAGAATATCAGATGTGTTAAATAGTCCTTCTTTCCAAAATATG
CAAGAAAGACTGACGCAAATTCGTGCTTCAGATGCTTATTTGGCTGCATCTCTTAGACAT
ATGAACACTGAGCAATTAACTATGGACCCTGCTGCTCTTATCTGA

Peptide Sequence

PEP ID

Solyc12g015650.2.1
PEP Infomation

U-box domain-containing protein 4 (AHRD V3.3 *** W9REK9_9ROSA)
Sequence

MLTSFQLIFFFFIILLFPICSFLKLQTEFSTTDDCFNTNPKVSCLQYFYFMPSFYVVRVV
LYSAAPVLWCYIYRKGGSSKQLCLLNVALMYVWKLTFLPLMFTFVMAQSGRKTEKLDINW
ERAFDLYLNAVACDNELLWVQATTTLAKLSKHAPEDLLARTIPVLVELLRRIPSTDLSPS
IQEAAAHCLKCVACRGEGRLAVLIGESGAIPSLLSLLLHADGSLRRVLLKCLRNSVTFAA
HNREIVVRHGGLEIILNLLNTCSDDLKLYLLEILSALALLREVRRTILTSRGVSFLVEAA
RRGSMGSRCRAAQAIGLLGLVKRARRTLVDSGTFSVLLELLQVGDTSTKVVAANALGVIS
SHVDYIRPLANAGAIPLYAELMQGTDPMGKEIAEDVFCILAVVEENGVAIVEHLVRILRG
DSAESKAAAADVLWDLAGYKHLPSVVRNSGAIPILVQLLEDENIDVREKVSGAITQLSYN
EADRAALANSGAIPRLVDMLQDESEEMRDNAAEALVNFSEDPSLGDRISDVLNSPSFQNM
QERLTQIRASDAYLAASLRHMNTEQLTMDPAALI*

Transcript Sequence

Transcript ID

Solyc12g015650.2.1
Transcript Infomation

U-box domain-containing protein 4 (AHRD V3.3 *** W9REK9_9ROSA)
Sequence

ATGTTGACGTCGTTTCAGTTAATCTTCTTCTTCTTTATCATACTCCTTTTTCCCATTTGC
TCATTCCTCAAACTCCAAACTGAGTTTTCCACAACGGATGATTGCTTTAATACAAATCCC
AAAGTGAGTTGTTTGCAATACTTTTACTTTATGCCTTCTTTTTATGTAGTTAGAGTAGTG
TTATACTCTGCTGCACCTGTTTTATGGTGCTATATATATCGCAAAGGAGGTTCATCAAAA
CAATTATGCCTATTAAATGTCGCGTTGATGTATGTTTGGAAGTTAACTTTCCTTCCTCTA
ATGTTTACATTTGTCATGGCCCAGTCTGGTAGAAAAACCGAAAAACTTGACATAAATTGG
GAACGAGCATTTGATCTTTATTTAAATGCAGTCGCATGTGACAATGAGCTTTTATGGGTC
CAAGCTACAACTACGCTTGCCAAATTGTCGAAACACGCGCCTGAGGATCTCTTAGCACGC
ACGATCCCTGTCCTTGTAGAGCTTCTTAGAAGGATCCCTTCCACTGATCTGAGTCCTTCA
ATTCAGGAAGCCGCTGCTCACTGCTTGAAATGTGTTGCTTGTCGAGGGGAAGGTAGATTG
GCTGTACTTATTGGTGAATCAGGTGCCATCCCTTCTCTTTTGAGTTTATTATTGCATGCT
GATGGGAGTTTGCGAAGGGTTTTATTGAAATGCCTTAGAAATAGTGTCACGTTTGCTGCT
CATAACCGTGAGATTGTAGTTAGACATGGTGGGCTGGAAATCATTCTCAATTTGTTGAAT
ACTTGCTCGGATGATCTAAAGCTATACTTACTAGAAATCCTCAGTGCATTGGCTCTTCTG
AGAGAAGTTAGGAGGACCATTTTGACTTCCAGGGGTGTTAGTTTTCTTGTTGAAGCTGCT
AGACGTGGCAGCATGGGATCTAGATGTAGAGCTGCTCAGGCAATTGGGTTGCTTGGATTG
GTCAAGAGAGCAAGGCGCACGCTTGTTGACTCGGGTACATTTTCAGTGCTTCTAGAACTA
CTTCAGGTTGGGGATACTTCAACTAAAGTCGTAGCTGCTAATGCACTTGGTGTGATCTCA
TCTCATGTTGATTACATTAGACCCCTTGCTAATGCTGGAGCTATTCCTCTTTACGCTGAG
CTTATGCAAGGAACTGATCCCATGGGTAAGGAGATTGCAGAGGATGTTTTTTGCATTCTA
GCAGTGGTAGAAGAGAATGGTGTAGCAATTGTTGAACACTTGGTTAGAATCCTTAGAGGA
GATAGTGCCGAATCTAAAGCTGCTGCTGCTGATGTATTATGGGATCTCGCAGGTTACAAG
CATTTGCCATCAGTTGTGCGAAATTCAGGTGCAATTCCTATTCTAGTTCAGTTGTTGGAA
GACGAAAATATTGATGTCCGGGAGAAGGTTTCTGGAGCTATCACTCAGTTGAGTTACAAT
GAAGCTGATAGAGCTGCTCTTGCAAATTCTGGAGCTATTCCACGATTAGTAGATATGTTA
CAGGATGAGTCGGAGGAAATGAGAGACAATGCTGCAGAAGCTCTTGTCAATTTCTCAGAG
GATCCGTCGCTAGGTGATAGAATATCAGATGTGTTAAATAGTCCTTCTTTCCAAAATATG
CAAGAAAGACTGACGCAAATTCGTGCTTCAGATGCTTATTTGGCTGCATCTCTTAGACAT
ATGAACACTGAGCAATTAACTATGGACCCTGCTGCTCTTATCTGACTCCTTATTCGTCTT
GAATGTT