Plant GARDEN
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SNP Detection
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Data List

All Markers Trait-Related Loci
Solanum lycopersicum

CDS Sequence

CDS ID

Solyc12g011000.2.1
CDS Infomation

Citrate synthase (AHRD V3.3 *** K4DCI6_SOLLC)
Sequence

ATGGAGAACGGAAATTCTTCATCAGTTGCTCGAGGGAGATTAGCGGTGCTTTCAGCTCAT
CTCGCAGCATCACTCAACGTTTCCGATTTAACAACCTTTAAACTTCTAGAAACTTCCGGT
GTATCTTCCGTTTCCGGCGTCGAACCTCCGCGGAATCTAAAAGGTGCGTTGACGATCATC
GATGAACGGACCGGTAAGAAGTATCCGGTTCAGGTTTCTGAGGATGGCACTATCAAAGCC
AACGACTTGAAGAAGATAACAACAGGACAGAATGATAAGGGTCTTAAGCTTTATGATCCA
GGCTATCTCAACACGGCACCTGTTAGGTCATCAATATGTTATATTGATGGTGATGCCGGG
ATCCTTAGATATCGAGGCTACCCTATTGAAGAGCTGGCCGAGGGAAGTTCCTTCTTGGAA
GTGGCATATCTTTTGTTGTATGGTAATTTACCATCTGAGAATCAGTTAGCAGACTGGGAG
TTCACAGTTTCACAGCATTCAGCAGTTCCACAAGGACTCTTGGATATCATACAGTCAATG
CCACATGATGCTCATCCAATGGGGGTTCTTGTCAGTGCAATGAGTGCTCTTTCCGTTTTT
CATCCTGATGCAAATCCAGCTCTGAGAGGGCAGGATATATACAAGTCTAAACAAGTGAGA
GATAAACAAATAGTTCGGATCCTTGGCAAGGCACCTACAATTGCTACAGCTGCTTACTTA
AGAATGGCTGGCAGGCCACCTGTCCTTCCATCCAACAATCTCTCATATGCGGAGAACTTC
TTGTACATGCTAGATTCATTAGGTAATAGGTCTTACAAACCCAATCCTCGACTTGCTCGT
GTGCTCGATATTCTTTTCATATTACATGCAGAACATGAGATGAATTGCTCTACAGCTGCG
GCACGTCATCTTGCTTCAAGTGGGGTTGATGTATACACAGCAATAGCAGGAGCTGTGGGA
GCTTTGTATGGCCCTCTCCATGGGGGTGCCAATGAGGCTGTGCTGAAAATGCTCAGTGAG
ATTGGAAGTGTTGAAAATATTCCAGAGTTCCTTGAGGGTGTCAAGAACAGGAAACGAAAG
ATGTCTGGTTTTGGGCACCGTGTCTACAAAAACTATGATCCCAGAGCAAAAGTCATCAAG
ACGCTGGCCGATGAAGTATTTTCTATTGTGGGTCGTGATCCTTTAATTGAGGTTGCTGTT
GCTCTGGAAAAAGCTGCACTCTCAGATGAGTACTTTGTAAAACGGAAGCTGTATCCAAAC
GTTGATTTCTACTCTGGTTTAATTTACAGGGCAATGGGATTTCCAACAGAATTCTTTCCT
GTCTTGTTTGCAATTCCTCGGATGGCCGGTTACTTGTCTCATTGGAATGAGTCCCTTGAT
GATCCTGATACCAAGATTATGAGACCCGCACAGGTGTATACTGGTGTATGGATGCGTCAC
TATATGCCTCTCAAAGAACGATCACCACATTCCGAAGCAGACAAGCTCGGTCACGTCTCC
GTCTCCAACGCCACCAAACGACGATTGGCTGGTTCAGGGGCCTGA

Peptide Sequence

PEP ID

Solyc12g011000.2.1
PEP Infomation

Citrate synthase (AHRD V3.3 *** K4DCI6_SOLLC)
Sequence

MENGNSSSVARGRLAVLSAHLAASLNVSDLTTFKLLETSGVSSVSGVEPPRNLKGALTII
DERTGKKYPVQVSEDGTIKANDLKKITTGQNDKGLKLYDPGYLNTAPVRSSICYIDGDAG
ILRYRGYPIEELAEGSSFLEVAYLLLYGNLPSENQLADWEFTVSQHSAVPQGLLDIIQSM
PHDAHPMGVLVSAMSALSVFHPDANPALRGQDIYKSKQVRDKQIVRILGKAPTIATAAYL
RMAGRPPVLPSNNLSYAENFLYMLDSLGNRSYKPNPRLARVLDILFILHAEHEMNCSTAA
ARHLASSGVDVYTAIAGAVGALYGPLHGGANEAVLKMLSEIGSVENIPEFLEGVKNRKRK
MSGFGHRVYKNYDPRAKVIKTLADEVFSIVGRDPLIEVAVALEKAALSDEYFVKRKLYPN
VDFYSGLIYRAMGFPTEFFPVLFAIPRMAGYLSHWNESLDDPDTKIMRPAQVYTGVWMRH
YMPLKERSPHSEADKLGHVSVSNATKRRLAGSGA*

Transcript Sequence

Transcript ID

Solyc12g011000.2.1
Transcript Infomation

Citrate synthase (AHRD V3.3 *** K4DCI6_SOLLC)
Sequence

TTGGATAAACATAATTAAATACCCCTGCCACGTTTGCAAAAAAGAGAAGAAGTCAGATCG
GACCATTTTCCCAGTAATTCACCACAAATTACTAATCAATGTTGAATTTGCAGAAAACAA
AGATCAATAAATTCACACAAATATAAATAAACAACGAAACACAAAATCAAATTCATTTCT
ATTTTCTAAAATCAAACATAGAAAAAAAATTAAAAATTCTAAGAAAAAGCATTTTCATGG
AGAACGGAAATTCTTCATCAGTTGCTCGAGGGAGATTAGCGGTGCTTTCAGCTCATCTCG
CAGCATCACTCAACGTTTCCGATTTAACAACCTTTAAACTTCTAGAAACTTCCGGTGTAT
CTTCCGTTTCCGGCGTCGAACCTCCGCGGAATCTAAAAGGTGCGTTGACGATCATCGATG
AACGGACCGGTAAGAAGTATCCGGTTCAGGTTTCTGAGGATGGCACTATCAAAGCCAACG
ACTTGAAGAAGATAACAACAGGACAGAATGATAAGGGTCTTAAGCTTTATGATCCAGGCT
ATCTCAACACGGCACCTGTTAGGTCATCAATATGTTATATTGATGGTGATGCCGGGATCC
TTAGATATCGAGGCTACCCTATTGAAGAGCTGGCCGAGGGAAGTTCCTTCTTGGAAGTGG
CATATCTTTTGTTGTATGGTAATTTACCATCTGAGAATCAGTTAGCAGACTGGGAGTTCA
CAGTTTCACAGCATTCAGCAGTTCCACAAGGACTCTTGGATATCATACAGTCAATGCCAC
ATGATGCTCATCCAATGGGGGTTCTTGTCAGTGCAATGAGTGCTCTTTCCGTTTTTCATC
CTGATGCAAATCCAGCTCTGAGAGGGCAGGATATATACAAGTCTAAACAAGTGAGAGATA
AACAAATAGTTCGGATCCTTGGCAAGGCACCTACAATTGCTACAGCTGCTTACTTAAGAA
TGGCTGGCAGGCCACCTGTCCTTCCATCCAACAATCTCTCATATGCGGAGAACTTCTTGT
ACATGCTAGATTCATTAGGTAATAGGTCTTACAAACCCAATCCTCGACTTGCTCGTGTGC
TCGATATTCTTTTCATATTACATGCAGAACATGAGATGAATTGCTCTACAGCTGCGGCAC
GTCATCTTGCTTCAAGTGGGGTTGATGTATACACAGCAATAGCAGGAGCTGTGGGAGCTT
TGTATGGCCCTCTCCATGGGGGTGCCAATGAGGCTGTGCTGAAAATGCTCAGTGAGATTG
GAAGTGTTGAAAATATTCCAGAGTTCCTTGAGGGTGTCAAGAACAGGAAACGAAAGATGT
CTGGTTTTGGGCACCGTGTCTACAAAAACTATGATCCCAGAGCAAAAGTCATCAAGACGC
TGGCCGATGAAGTATTTTCTATTGTGGGTCGTGATCCTTTAATTGAGGTTGCTGTTGCTC
TGGAAAAAGCTGCACTCTCAGATGAGTACTTTGTAAAACGGAAGCTGTATCCAAACGTTG
ATTTCTACTCTGGTTTAATTTACAGGGCAATGGGATTTCCAACAGAATTCTTTCCTGTCT
TGTTTGCAATTCCTCGGATGGCCGGTTACTTGTCTCATTGGAATGAGTCCCTTGATGATC
CTGATACCAAGATTATGAGACCCGCACAGGTGTATACTGGTGTATGGATGCGTCACTATA
TGCCTCTCAAAGAACGATCACCACATTCCGAAGCAGACAAGCTCGGTCACGTCTCCGTCT
CCAACGCCACCAAACGACGATTGGCTGGTTCAGGGGCCTGAGGCTTCCTTCAAGGTTCAC
TCATATTTAATATAAGAAAAATAAATGATGGTATTTTTTTTTCTTCTCTATGAGGATTAA
ACTTGTCTAGATTCTCACATACTCAAAAGCAGATGTATTCGGATGAAGTTTTATTTCTCC
GTTTCTAAAAATAACTTAGTAAACTTTTAGTGTGTCCTAGTCCTACAATGATGCGGAGTG
TACCTAATTATAGTAACTTTTAAACTTAAAACTAGTCCTTATATATATCATTCTTTAGGT
TATTTTTCACTTACTATCATCAAAATCACAATCAAATATTCATGGAAGAGTGCAACTATA
TATTCGCATGTATCCCAGACGAACTCATCGTTGAAATTCTGAGAAAACTTCCTGCTAAGT
CTCTAATGAAGTTCAAGTGCGTTTCTAAATCCTTTAACTCCCTTATGTCAGATCCTTCAT
TCATTGAATCACATCAAAAAAGTTACATGACTGAATTCTTCATAAATCGTCTAAGAATGG
AATATTATAGATTATCAAAAACTGATGAAGACCTCCTATCTACTTGTCCCCTTGAATACT
TGGATCAATCATGTTTTCGAAATCTTAAATGCATGCAATCAACCAATGGCCTAGTTTGTC
TATGGAACAATCATGGAGACATTGCTATTTGCAATCCTTTTATAAAACAACATATCTTTC
TTCCTCGTCAACAACATTACAGCAGGACGATTTACGCCGGCATTGGTTTTGATCCTACCA
CCAAAACACATAAAGTATTCAAGGAAGAAATAATCTTTGAAAGTGGTAAGGTGATGTATT
CGATTTTCACCATTGGGATAGATAAATCGTGGAGAGAAATTAATGGTTGGATCAATTTTC
GCCCTATGTTTTACAATAGTGTTTGCATCGATGGAGTTATTTATTTCATAAATAATTGCG
TGCGTGACGTAATTGCATTCAGTGTTAGACATGAAAAATTTATTAGAAGGATTCCATTCC
CTACAAAAGAATGGCCATTAAGGTGGTGTGATTTTACTCCAATATTAGTAGAAACAAAGG
GACAAGTTGCAATTTTAGGTCATGTATATTTTGATTTTGGGAAAATTGCTTTATATACCA
GTGAAATTGAGCCATGGGTGAAACATATAATTGAGTTACCATTAGAATATAAAAATATAA
CTCGATCTCTTAGTTTTTTATCAACCACCAATCCAAAAGGAGATATATTGTCAATTCCAG
AGACTAAGAATCCACCATTGTTCTTATATGACGATGAAAAGAAAGAATGGAGAATAGTTG
CAAAAAATAGAATTTATGCACAAAGTTTACATATTCGAGATGGGGCTCAAATTTACCTAA
GTCTTGTGGAGAGTATTTGGCCTTTGAAATAATTTCTACGATGACTCAAGGATTTGCTGG
GAGTTTCGGATCAAAGAAGAGGCAGATCATAATAGTTCGTCTAGTTTAAAATAGGAAGAA
CTGTATAGATTTTATCAGGTTTTATTTATTTATGAAGAGAAG