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TOP > About the Species(Solanum lycopersicum ) > genome data >Gene sequences

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SNP Detection
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Data List

All Markers Trait-Related Loci
Solanum lycopersicum

CDS Sequence

CDS ID

Solyc12g010830.2.1
CDS Infomation

Pentatricopeptide (PPR) repeat protein (AHRD V3.3 --* A0A072VHT8_MEDTR)
Sequence

ATGGATTTGAAAGGTATAGCATGGGTTGGAGATATATACCAGAAATTTGAAGCGATGTGT
TTGGAGATGGAAGATGCTATGTACCAGGATACCGCTAGATATGTTGAGAATCAAGTGCAG
ACTGTTGGTGCAAGTGTCAAGAGGTTCTATTCAGATGTGGTGCTAGATCTGCATCCTCAA
TTTAACATAGATCCCGTGAAAGTTGCAGCTGCTGACTTGTCTCTTAATCCTTATGCGCAC
ACTGAAATCAGCAAGAAGCTGAAAGCACAACTTAAAGGAGGCCACCCTAGGGTAATTAAT
AAGGAATTAATTGATGATACTCAAGTGATTAAGGGGAAAAGCAAAAGTGGAGGAGTTTAT
AGACGTCAAAGTGTTGGGATGAAAGAAATTGTTAGAGATAATCATCCACCATCTAAGAAG
TCGGACGCTCTCTGTCTCGTATCAGGGAATACAATTAAATTGTCCTCAGATTCTAAGGTT
AGGGGAGGTTTTGAAGTGGCATCCGACCACATGACCATGACTTCGCCCTTGGCCTCAGTT
AAAGGACTTAAGTCTACCGAGACAGGAAAGGAGGTTTCCAACCATATTATAAAAACAGAG
GTGCCTGCAGCAGGTATATCAATTAATATTGCAGCGTCTGACACGAGCTTATCAGTTGAC
TGTGTTGGGCAGAACCAAGCAGATCTCAGGAACACTTTCTCTGTTGGTGACTTGCAATCA
GACTCTCATGATAGGGGTACACGCAAGGAGTTGGCTGGTGATACTGGACTAAAGATTAGC
AGTAATACTGGTGACAATAATATTGCCAGCAAGGAGGTCAATAATATTGCAAAGATTAGC
AGTAATACCGATGACAATAATATTGCCGGTGAGGAGATCAAAGAGTCCTGCAAAGCAAGA
TCAGATAAATCTTGTTCTCCTCCACCTGACAAGTATGACTTGATCGAGTCCGATGTGGAA
ATTGTTGAGCGCTATGATGAACCAAAGTTAGAGGAAACATGTGTCCTGGTTGAAGCGGAG
AAACTTCATGTTCCACAAGGATCAGTCAAACGGAAATCATACAAGAAGAAGCTCAGGCAA
GTGTTTTCTATGAAAAAGAAGTCGACGAGAACAGAGTATGAGCAGCTTGGAGCATTATAT
GGAGATCAACAGCCGAACCTACAGCCTGAAGAAAAGCAGATGCAGGTTCTCTCCAAAAAC
TCAAACCCGAAAAAATTGTCATCAGCTGATGATCATTCTGAATCTGAGTGGGAACTTCTC
TAG

Peptide Sequence

PEP ID

Solyc12g010830.2.1
PEP Infomation

Pentatricopeptide (PPR) repeat protein (AHRD V3.3 --* A0A072VHT8_MEDTR)
Sequence

MDLKGIAWVGDIYQKFEAMCLEMEDAMYQDTARYVENQVQTVGASVKRFYSDVVLDLHPQ
FNIDPVKVAAADLSLNPYAHTEISKKLKAQLKGGHPRVINKELIDDTQVIKGKSKSGGVY
RRQSVGMKEIVRDNHPPSKKSDALCLVSGNTIKLSSDSKVRGGFEVASDHMTMTSPLASV
KGLKSTETGKEVSNHIIKTEVPAAGISINIAASDTSLSVDCVGQNQADLRNTFSVGDLQS
DSHDRGTRKELAGDTGLKISSNTGDNNIASKEVNNIAKISSNTDDNNIAGEEIKESCKAR
SDKSCSPPPDKYDLIESDVEIVERYDEPKLEETCVLVEAEKLHVPQGSVKRKSYKKKLRQ
VFSMKKKSTRTEYEQLGALYGDQQPNLQPEEKQMQVLSKNSNPKKLSSADDHSESEWELL
*

Transcript Sequence

Transcript ID

Solyc12g010830.2.1
Transcript Infomation

Pentatricopeptide (PPR) repeat protein (AHRD V3.3 --* A0A072VHT8_MEDTR)
Sequence

TGCTGTGCTTTTTATTTGCATTAAAAGTTGTAATTTTGGAATTCTGCTGATAAAAATTTA
CCCGTGACTTGCAATTTTTGCTTCTGGGTATTCTTTTTTTGTTCTTTGAAAGCTATATCA
TATTGCAGCACTATATTCGTTGAATCCTTGGAAAGTTGTCAAAGTGTTATGCGATGGATT
TGAAAGGTATAGCATGGGTTGGAGATATATACCAGAAATTTGAAGCGATGTGTTTGGAGA
TGGAAGATGCTATGTACCAGGATACCGCTAGATATGTTGAGAATCAAGTGCAGACTGTTG
GTGCAAGTGTCAAGAGGTTCTATTCAGATGTGGTGCTAGATCTGCATCCTCAATTTAACA
TAGATCCCGTGAAAGTTGCAGCTGCTGACTTGTCTCTTAATCCTTATGCGCACACTGAAA
TCAGCAAGAAGCTGAAAGCACAACTTAAAGGAGGCCACCCTAGGGTAATTAATAAGGAAT
TAATTGATGATACTCAAGTGATTAAGGGGAAAAGCAAAAGTGGAGGAGTTTATAGACGTC
AAAGTGTTGGGATGAAAGAAATTGTTAGAGATAATCATCCACCATCTAAGAAGTCGGACG
CTCTCTGTCTCGTATCAGGGAATACAATTAAATTGTCCTCAGATTCTAAGGTTAGGGGAG
GTTTTGAAGTGGCATCCGACCACATGACCATGACTTCGCCCTTGGCCTCAGTTAAAGGAC
TTAAGTCTACCGAGACAGGAAAGGAGGTTTCCAACCATATTATAAAAACAGAGGTGCCTG
CAGCAGGTATATCAATTAATATTGCAGCGTCTGACACGAGCTTATCAGTTGACTGTGTTG
GGCAGAACCAAGCAGATCTCAGGAACACTTTCTCTGTTGGTGACTTGCAATCAGACTCTC
ATGATAGGGGTACACGCAAGGAGTTGGCTGGTGATACTGGACTAAAGATTAGCAGTAATA
CTGGTGACAATAATATTGCCAGCAAGGAGGTCAATAATATTGCAAAGATTAGCAGTAATA
CCGATGACAATAATATTGCCGGTGAGGAGATCAAAGAGTCCTGCAAAGCAAGATCAGATA
AATCTTGTTCTCCTCCACCTGACAAGTATGACTTGATCGAGTCCGATGTGGAAATTGTTG
AGCGCTATGATGAACCAAAGTTAGAGGAAACATGTGTCCTGGTTGAAGCGGAGAAACTTC
ATGTTCCACAAGGATCAGTCAAACGGAAATCATACAAGAAGAAGCTCAGGCAAGTGTTTT
CTATGAAAAAGAAGTCGACGAGAACAGAGTATGAGCAGCTTGGAGCATTATATGGAGATC
AACAGCCGAACCTACAGCCTGAAGAAAAGCAGATGCAGGTTCTCTCCAAAAACTCAAACC
CGAAAAAATTGTCATCAGCTGATGATCATTCTGAATCTGAGTGGGAACTTCTCTAGATAT
GACGCATT