Gene sequences

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Trait-Related Loci

Solanum lycopersicum

CDS Sequence

CDS ID	Solyc12g010600.2.1
CDS Infomation	RNA polymerase 2 second largest subunit 2
Sequence	ATGCAGGAAATTGTTGATGAAACTGCTGATATTGAAATTCGACCTGAATCTCAGCATAAT CCTAGTCGTCAACCTGATTTCGTTGAGACGATCTACAAGATCAAGTTTACTCAGATATAC TTGAGTAGACCTATGATGACAGAGTCTGATGGAGAGACTAATACTTTGTTTCCAAAGGCC GCAAGGTTAAGAAACTTGACATACTCTTCCCCGCTATATGTTGATGTGAAGAAGGAAGTA ATAAAGAAAGGTCATGACTATGAAGAAGTGACAGAAAATCAGGAATTTACCAAAGTTTTC ATTGGAAAGGTTCCTATAATGCTTCGGTCAAGCTACTGCAGCTTGTATAACCTGTCGGAG AAAGATTTAACAGAGTTGGGAGAGTGCCCGTATGATCAAGGTGGATACTTCATAGTCAAT GGGAGTGAGAAAGTTCTGATTGCACAGGAAAAAATGAGCAGTAATCATGTTTATGTATTC AAGAAAAGACAACCAAACAAGTATGCTTATGTGGCAGAAGTTCGGTCTATATCCGAGGGC CAAAACAAGGCACCTAGTGGCATGTTTGTTAGGATGCTTTCTAGGTCTAATTCTAAGGGG GCGTATGGCCAGTATATTCGTGCCACTCTTCCATACATACGGACTGAAATTCCAATTATA GTAGTCTTCAGGGCATTAGGATTTGTCGCTGACAAGGATATATTGGCGCATATTTGTTAT GATTTTGCTGACACTCAGATGATGGAATTACTTCGCCCTTCCTTGGAAGAAGCTTTCGTG ATTCAAAATCAGCAGGTGGCACTTGACTATATTGGCAAAAGAGGATCTACTGTTGGTTTC ACAAGAGAAAAGAGAATCAAGTATGCCAAAGAGATTCTCCAAAGAGAAATGCTTCCGCAT GTTGGTACTAGAGAATATTGTGAAACTAAGAAAGCCTACTATTTTGGCTACATCATCCAT CGTCTTTTACTCTGTGTATTGGGACGGAGGCCTGAAGATGATAGGGATCATTATGCTAAC AAAAGACTGGATCTTGCTGGCCCTTTACTTGGTGGCTTATTCCGAATGCTATTCAGGAAG CTAACAAGGGATGTGAGATCCTATGTTCAAAAGTGTGTTGACGGTGGAAAGGATGTGAAT TTGCAATTTGCCATTAAAGCAAAAACAATTACAAGTGGACTTAAGTATTCTCTTGCTACG GGGAACTGGGGACAAGCAAATGCTGCTGGTACCAGGGCAGGAGTTTCACAGGTTTTGAAT CGTTTGACATTTGCATCTACTCTTTCTCACTTGCGTAGATTGAACTCACCGATAGGGCGG GAGGGTAAATTGGCAAAACCTAGACAGCTTCATAATTCTCACTGGGGAATGATGTGTCCA GCAGAAACGCCCGAAGGACAAGCATGTGGACTGGTAAAGAACCTTGCTTTAATGGTGTAT ATAACAGTAGGATCAGCAGCAAATCCAATTTTGGAGTTTCTAGAAGAGTGGAGTACAGAA AATTTTGAGGAAATATCTCCTGCGGTTATTCCCCAATCTACCAAGATTTTTGTAAATGGT TGTTGGGTTGGCATTCATCGTAATCCAGATCTGTTGGTTAGGACACTGAGACAGCTGAGG AGACAGGTTGATGTTAATACTGAAGTTGGAGTTGTCCGAAATATAAATCTGAAGGAACTG CGCCTGTATACAGATTATGGACGTTGTAGTAGGCCGTTATTCATAGTGGATAAAAAGAGA TTGAGAATAAAGAAGAATGATATTATCGCACTGCAAATGAGGGAGTCATCTGAAGATTCT GGCTGGCATGATCTTGTGGCGAAAGGATTTATTGAGTATGTTGATACTGAGGAGGAAGAG ACTACAATGATCGCAATGACCATAAATGATCTTACAAATTCAAGGGTGAACCCAGATGAG GCTTATGCTGAGACCTACACACACTGTGAAATCCATCCATCTTTGATATTGGGAGTGTGC GCTTCAATCATACCATTTCCAGATCATAATCAGTCCCCTCGTAACACATATCAATCAGCT ATGGGAAAGCAAGCAATGGGGATTTATGTCACCAATTACCAATTTCGGATGGATACATTG GCCTATGTACTGTATTATCCACAAAAGCCTCTTGTTACTACGCGAGCTATGGAGCATTTG CATTTCAGACAGCTTCCAGCTGGCATTAATGCCATTGTTGCCATTACCTGTTATTCTGGC TATAACCAAGAAGATTCTGTCATCATGAATCAATCTTCAATTGACCGTGGCTTATTCCGC TCTCTATTTTTCCGTTCATATAGGGATGAAGAGAAAAAGATGGGAACGCTTGTTAAAGAG GATTTTGGGCGTCCTGATAGAGAACATACCATGGGAATGCGACATGGAAATTACGATAAA TTAGAAGATGATGGATTTGCACCTCCTGGAACAAGAGTTTCTGGTGATGATGTCATAATT GGAAAGACCACACCTATTTCTCAAGATGAGGCTCAAGGACAATCTGCAAGATACACGCGC AAAGACCATAGTACCAGTCTACGACATAGTGAAACTGGAATTGTGGATCAGGTTCTTTTG ACAACAAATGCAGATGGATTGAGATTTGTCAAAATAAGGATGAGATCTGTCAGAATTCCA CAGATTGGAGACAAATTCAGCAGCCGGCATGGACAAAAAGGAACCATTGGAATGACTTAT ACACAAGAAGACATGCCATGGTCCGCTGAAGGCATCACCCCAGATATCATTGTGAATCCT CATGCTATCCCTTCTCGTATGACAATAGGTCAGCTAGTTGAGTGCATCATGGGGAAGGTT GCTGCTCACATTGGAAAGGAAGGAGATGCTACCCCTTTTACTGATGTTACTGTGGATAGT ATCAGCAGAACTCTACACAATTGTGGCTATCAGATGCGTGGTTTTGAGAGAATGTATAAT GGTCATACAGGTCGTGTACTGCCTGCAATGATATTCTTGGGGCCAACTTACTACCAGAGA CTGAAGCACATGGTGGATGATAAGATTCATTCTCGTGGCCGTGGTCCTGTGCAGATTCTC ACTAGACAGCCTGCTGAAGGGAGATCTCGTGATGGAGGACTACGATTTGGGGAGATGGAA CGTGACTGTATGATAGCTCATGGAGCTGCACACTTCCTTAAAGAGAGACTGTTTGATCAA AGTGATGCTTACAGAGTTCATGTATGCCAGCAATGTGGTTTAATGGCTATTGCAAATCTG AAAAAGATGTCATTCGAGTGCAGATCTTGTAGGAATAAAACTGACAATGTTCAGGTGTAT ATTCCCTATGCCTGCAAGCTTCTGATTCAAGAGCTCATGTCAATGGCAATTGCCCCAAGA ATGCTTACAAAGGAACTGAAACCATCAAATCGAAAGTACAACAACAGATTCACTCAACTC TACACTATCAACAACGCACCTAGAATTCTGAGACGCAAACGTTACATCTTTCGAAATTTC TTTATCTTGATCATTTATATCAACATTCAACAAAGACTCTTCATTTCCTTCATCAACATT CTCCATCACAGAATCATCAGTATCAACTTCATTTGCTTCCAATACTTGGACATCAGTCGC CACACCAGCCATCACATCATCAGAAAACAGCTCAAACTTGTGTTCAACTGCATTAGTCAA TTGTTCAGTTTCCACTCCAGAAGATTCATGTTCTTGTGA

Peptide Sequence

PEP ID	Solyc12g010600.2.1
PEP Infomation	RNA polymerase 2 second largest subunit 2
Sequence	MQEIVDETADIEIRPESQHNPSRQPDFVETIYKIKFTQIYLSRPMMTESDGETNTLFPKA ARLRNLTYSSPLYVDVKKEVIKKGHDYEEVTENQEFTKVFIGKVPIMLRSSYCSLYNLSE KDLTELGECPYDQGGYFIVNGSEKVLIAQEKMSSNHVYVFKKRQPNKYAYVAEVRSISEG QNKAPSGMFVRMLSRSNSKGAYGQYIRATLPYIRTEIPIIVVFRALGFVADKDILAHICY DFADTQMMELLRPSLEEAFVIQNQQVALDYIGKRGSTVGFTREKRIKYAKEILQREMLPH VGTREYCETKKAYYFGYIIHRLLLCVLGRRPEDDRDHYANKRLDLAGPLLGGLFRMLFRK LTRDVRSYVQKCVDGGKDVNLQFAIKAKTITSGLKYSLATGNWGQANAAGTRAGVSQVLN RLTFASTLSHLRRLNSPIGREGKLAKPRQLHNSHWGMMCPAETPEGQACGLVKNLALMVY ITVGSAANPILEFLEEWSTENFEEISPAVIPQSTKIFVNGCWVGIHRNPDLLVRTLRQLR RQVDVNTEVGVVRNINLKELRLYTDYGRCSRPLFIVDKKRLRIKKNDIIALQMRESSEDS GWHDLVAKGFIEYVDTEEEETTMIAMTINDLTNSRVNPDEAYAETYTHCEIHPSLILGVC ASIIPFPDHNQSPRNTYQSAMGKQAMGIYVTNYQFRMDTLAYVLYYPQKPLVTTRAMEHL HFRQLPAGINAIVAITCYSGYNQEDSVIMNQSSIDRGLFRSLFFRSYRDEEKKMGTLVKE DFGRPDREHTMGMRHGNYDKLEDDGFAPPGTRVSGDDVIIGKTTPISQDEAQGQSARYTR KDHSTSLRHSETGIVDQVLLTTNADGLRFVKIRMRSVRIPQIGDKFSSRHGQKGTIGMTY TQEDMPWSAEGITPDIIVNPHAIPSRMTIGQLVECIMGKVAAHIGKEGDATPFTDVTVDS ISRTLHNCGYQMRGFERMYNGHTGRVLPAMIFLGPTYYQRLKHMVDDKIHSRGRGPVQIL TRQPAEGRSRDGGLRFGEMERDCMIAHGAAHFLKERLFDQSDAYRVHVCQQCGLMAIANL KKMSFECRSCRNKTDNVQVYIPYACKLLIQELMSMAIAPRMLTKELKPSNRKYNNRFTQL YTINNAPRILRRKRYIFRNFFILIIYINIQQRLFISFINILHHRIISINFICFQYLDISR HTSHHIIRKQLKLVFNCISQLFSFHSRRFMFL*

Transcript Sequence

Transcript ID	Solyc12g010600.2.1
Transcript Infomation	RNA polymerase 2 second largest subunit 2
Sequence	AAAAAGGACTTGTGAGGCAACAATTGGATTCGTTTGATGAGTTTATACAGAATACAATGC AGGAAATTGTTGATGAAACTGCTGATATTGAAATTCGACCTGAATCTCAGCATAATCCTA GTCGTCAACCTGATTTCGTTGAGACGATCTACAAGATCAAGTTTACTCAGATATACTTGA GTAGACCTATGATGACAGAGTCTGATGGAGAGACTAATACTTTGTTTCCAAAGGCCGCAA GGTTAAGAAACTTGACATACTCTTCCCCGCTATATGTTGATGTGAAGAAGGAAGTAATAA AGAAAGGTCATGACTATGAAGAAGTGACAGAAAATCAGGAATTTACCAAAGTTTTCATTG GAAAGGTTCCTATAATGCTTCGGTCAAGCTACTGCAGCTTGTATAACCTGTCGGAGAAAG ATTTAACAGAGTTGGGAGAGTGCCCGTATGATCAAGGTGGATACTTCATAGTCAATGGGA GTGAGAAAGTTCTGATTGCACAGGAAAAAATGAGCAGTAATCATGTTTATGTATTCAAGA AAAGACAACCAAACAAGTATGCTTATGTGGCAGAAGTTCGGTCTATATCCGAGGGCCAAA ACAAGGCACCTAGTGGCATGTTTGTTAGGATGCTTTCTAGGTCTAATTCTAAGGGGGCGT ATGGCCAGTATATTCGTGCCACTCTTCCATACATACGGACTGAAATTCCAATTATAGTAG TCTTCAGGGCATTAGGATTTGTCGCTGACAAGGATATATTGGCGCATATTTGTTATGATT TTGCTGACACTCAGATGATGGAATTACTTCGCCCTTCCTTGGAAGAAGCTTTCGTGATTC AAAATCAGCAGGTGGCACTTGACTATATTGGCAAAAGAGGATCTACTGTTGGTTTCACAA GAGAAAAGAGAATCAAGTATGCCAAAGAGATTCTCCAAAGAGAAATGCTTCCGCATGTTG GTACTAGAGAATATTGTGAAACTAAGAAAGCCTACTATTTTGGCTACATCATCCATCGTC TTTTACTCTGTGTATTGGGACGGAGGCCTGAAGATGATAGGGATCATTATGCTAACAAAA GACTGGATCTTGCTGGCCCTTTACTTGGTGGCTTATTCCGAATGCTATTCAGGAAGCTAA CAAGGGATGTGAGATCCTATGTTCAAAAGTGTGTTGACGGTGGAAAGGATGTGAATTTGC AATTTGCCATTAAAGCAAAAACAATTACAAGTGGACTTAAGTATTCTCTTGCTACGGGGA ACTGGGGACAAGCAAATGCTGCTGGTACCAGGGCAGGAGTTTCACAGGTTTTGAATCGTT TGACATTTGCATCTACTCTTTCTCACTTGCGTAGATTGAACTCACCGATAGGGCGGGAGG GTAAATTGGCAAAACCTAGACAGCTTCATAATTCTCACTGGGGAATGATGTGTCCAGCAG AAACGCCCGAAGGACAAGCATGTGGACTGGTAAAGAACCTTGCTTTAATGGTGTATATAA CAGTAGGATCAGCAGCAAATCCAATTTTGGAGTTTCTAGAAGAGTGGAGTACAGAAAATT TTGAGGAAATATCTCCTGCGGTTATTCCCCAATCTACCAAGATTTTTGTAAATGGTTGTT GGGTTGGCATTCATCGTAATCCAGATCTGTTGGTTAGGACACTGAGACAGCTGAGGAGAC AGGTTGATGTTAATACTGAAGTTGGAGTTGTCCGAAATATAAATCTGAAGGAACTGCGCC TGTATACAGATTATGGACGTTGTAGTAGGCCGTTATTCATAGTGGATAAAAAGAGATTGA GAATAAAGAAGAATGATATTATCGCACTGCAAATGAGGGAGTCATCTGAAGATTCTGGCT GGCATGATCTTGTGGCGAAAGGATTTATTGAGTATGTTGATACTGAGGAGGAAGAGACTA CAATGATCGCAATGACCATAAATGATCTTACAAATTCAAGGGTGAACCCAGATGAGGCTT ATGCTGAGACCTACACACACTGTGAAATCCATCCATCTTTGATATTGGGAGTGTGCGCTT CAATCATACCATTTCCAGATCATAATCAGTCCCCTCGTAACACATATCAATCAGCTATGG GAAAGCAAGCAATGGGGATTTATGTCACCAATTACCAATTTCGGATGGATACATTGGCCT ATGTACTGTATTATCCACAAAAGCCTCTTGTTACTACGCGAGCTATGGAGCATTTGCATT TCAGACAGCTTCCAGCTGGCATTAATGCCATTGTTGCCATTACCTGTTATTCTGGCTATA ACCAAGAAGATTCTGTCATCATGAATCAATCTTCAATTGACCGTGGCTTATTCCGCTCTC TATTTTTCCGTTCATATAGGGATGAAGAGAAAAAGATGGGAACGCTTGTTAAAGAGGATT TTGGGCGTCCTGATAGAGAACATACCATGGGAATGCGACATGGAAATTACGATAAATTAG AAGATGATGGATTTGCACCTCCTGGAACAAGAGTTTCTGGTGATGATGTCATAATTGGAA AGACCACACCTATTTCTCAAGATGAGGCTCAAGGACAATCTGCAAGATACACGCGCAAAG ACCATAGTACCAGTCTACGACATAGTGAAACTGGAATTGTGGATCAGGTTCTTTTGACAA CAAATGCAGATGGATTGAGATTTGTCAAAATAAGGATGAGATCTGTCAGAATTCCACAGA TTGGAGACAAATTCAGCAGCCGGCATGGACAAAAAGGAACCATTGGAATGACTTATACAC AAGAAGACATGCCATGGTCCGCTGAAGGCATCACCCCAGATATCATTGTGAATCCTCATG CTATCCCTTCTCGTATGACAATAGGTCAGCTAGTTGAGTGCATCATGGGGAAGGTTGCTG CTCACATTGGAAAGGAAGGAGATGCTACCCCTTTTACTGATGTTACTGTGGATAGTATCA GCAGAACTCTACACAATTGTGGCTATCAGATGCGTGGTTTTGAGAGAATGTATAATGGTC ATACAGGTCGTGTACTGCCTGCAATGATATTCTTGGGGCCAACTTACTACCAGAGACTGA AGCACATGGTGGATGATAAGATTCATTCTCGTGGCCGTGGTCCTGTGCAGATTCTCACTA GACAGCCTGCTGAAGGGAGATCTCGTGATGGAGGACTACGATTTGGGGAGATGGAACGTG ACTGTATGATAGCTCATGGAGCTGCACACTTCCTTAAAGAGAGACTGTTTGATCAAAGTG ATGCTTACAGAGTTCATGTATGCCAGCAATGTGGTTTAATGGCTATTGCAAATCTGAAAA AGATGTCATTCGAGTGCAGATCTTGTAGGAATAAAACTGACAATGTTCAGGTGTATATTC CCTATGCCTGCAAGCTTCTGATTCAAGAGCTCATGTCAATGGCAATTGCCCCAAGAATGC TTACAAAGGAACTGAAACCATCAAATCGAAAGTACAACAACAGATTCACTCAACTCTACA CTATCAACAACGCACCTAGAATTCTGAGACGCAAACGTTACATCTTTCGAAATTTCTTTA TCTTGATCATTTATATCAACATTCAACAAAGACTCTTCATTTCCTTCATCAACATTCTCC ATCACAGAATCATCAGTATCAACTTCATTTGCTTCCAATACTTGGACATCAGTCGCCACA CCAGCCATCACATCATCAGAAAACAGCTCAAACTTGTGTTCAACTGCATTAGTCAATTGT TCAGTTTCCACTCCAGAAGATTCATGTTCTTGTGA