Plant GARDEN
How To ▶︎

JA

EN

TOP > About the Species(Solanum lycopersicum ) > genome data >Gene sequences

Search

By Species By Keywords Genes By Markers By Traits

Let’s Analyze!!

SNP Detection
(lang=JA only) Sequences Other Tools

Data List

All Markers Trait-Related Loci
Solanum lycopersicum

CDS Sequence

CDS ID

Solyc12g009620.2.1
CDS Infomation

Ubiquitin system component Cue protein (AHRD V3.3 *** AT5G32440.3)
Sequence

ATGTCTGCTATATTGTGCGGGAAGAGATCGAATTTGTTTGAGGATTTTCAGTCGTCGTCG
TCTGCGTCAACGCCGGTTTCGAAGAGGATTCGCCGTAATTTTTCTCCGGCGAGGTCTAAT
TCTGATTCCGATCGTGTTTTGTGTGGTAATTTGATTGCATCGTCGGCACTCGATCATCTT
CTCATGATTTTCTCTGACACGGACAAGCAGTTGGTTGAGAGAGCACTTGAAGAATCCGGT
GATGATCTAGATTCTGCTATCAAACGCCTGAATGAGCTCTGCTTGGGATCTGGTGATAAT
CTGAGGCCTGTGGCAGGAAGCTCTGGTGCTACACATGAGTTCAGCAGCCAGGTTTTTCCT
CAAGGTGTGGCTACAACTAATGGTGAGACCCCATCTGCAGAGGATTTATCTTCTGCAGAA
GTGGTGCATTTGCAGGGTACAGAATGGGTGGATCTTTTTGTTGGAGAGATGATGAGTGCA
TCAAACATAGATGATGCTAAAGCGCGTGCTTCACGAGCTCTGGAGGCTTTTGAGAAGACC
ATATGTGCTCGTGCAACAGAGGCAGCCTGCCGTTTCCAGAAGGAGAATATGATGCTCAAG
CAGCAGTTAGAAGCTCTTGTACAAGAGAATGCTATTTTCAAGCGAGCAGTTGCCATCCAG
CATGAGCGTCAAAAGGAATTCGAGAATAGAGGGAACGAGTTGAATCAGCTGAAGCAGTCG
GTGGCTCAGTACCAGGAGCAGCTTAGAACCCTTGAGGTCAATAACTATGCTCTCACGATG
CACCTCAAGCAAGCTCAACAAAGCAACAACTCCATTCCAGGGCGTTTCAACCCCGATGTC
TTTTAG

Peptide Sequence

PEP ID

Solyc12g009620.2.1
PEP Infomation

Ubiquitin system component Cue protein (AHRD V3.3 *** AT5G32440.3)
Sequence

MSAILCGKRSNLFEDFQSSSSASTPVSKRIRRNFSPARSNSDSDRVLCGNLIASSALDHL
LMIFSDTDKQLVERALEESGDDLDSAIKRLNELCLGSGDNLRPVAGSSGATHEFSSQVFP
QGVATTNGETPSAEDLSSAEVVHLQGTEWVDLFVGEMMSASNIDDAKARASRALEAFEKT
ICARATEAACRFQKENMMLKQQLEALVQENAIFKRAVAIQHERQKEFENRGNELNQLKQS
VAQYQEQLRTLEVNNYALTMHLKQAQQSNNSIPGRFNPDVF*

Transcript Sequence

Transcript ID

Solyc12g009620.2.1
Transcript Infomation

Ubiquitin system component Cue protein (AHRD V3.3 *** AT5G32440.3)
Sequence

AATATGTGTTGCTTATTTCCTTTTTCATACCTAATTTGATATGTTTTCTTCAGATCACTA
AAACCTCTAATTAAAAACAACCTTTTTAACGCAAGGTAAAGGTATTAATAATAATAATAA
CATAATCCATAAAATCCTACGAACTAAGGTCGGTGATTGTAGATATACATAAAACTCTTA
CCCTTATTTTCGAAGGTAAAAAAGTTATTTCCAAAAGAATCTCGAAATAACGCAACTTAA
ATCCATCAACAAAATTACACTTTAATCCACTTTATCCTATAATGACATGACACTTGTCAT
TTTCTTATTAGTCCGTCATTAAACACTCGTAAACTCCCCGTCAGTTGATTCTCCGTTACA
CAATTGTTCAAAATGTTCAATCTCCATTGTTACAGAGTTGAAGAAGCTGTAATCTCTCTC
GTGAAGAGAGAGAATTTAAGAGAAAAATTATTATTTTTTTTCTTTTTATTTACAAAATAT
TATTCATAGATTCATAGCAAATTTTAGCAATTCGACCATATTTTTTTTTCTTAATTTTTT
TGATTTTTTAATTTTTTTTTGAATTTATAAATCTGCATGATCGGAACGGGAAAAGAGGAA
CTTTTGATCGGAGAAATCTGAAAGAGGAATTTTTTTCCGGCACATCATGTCTGCTATATT
GTGCGGGAAGAGATCGAATTTGTTTGAGGATTTTCAGTCGTCGTCGTCTGCGTCAACGCC
GGTTTCGAAGAGGATTCGCCGTAATTTTTCTCCGGCGAGGTCTAATTCTGATTCCGATCG
TGTTTTGTGTGGTAATTTGATTGCATCGTCGGCACTCGATCATCTTCTCATGATTTTCTC
TGACACGGACAAGCAGTTGGTTGAGAGAGCACTTGAAGAATCCGGTGATGATCTAGATTC
TGCTATCAAACGCCTGAATGAGCTCTGCTTGGGATCTGGTGATAATCTGAGGCCTGTGGC
AGGAAGCTCTGGTGCTACACATGAGTTCAGCAGCCAGGTTTTTCCTCAAGGTGTGGCTAC
AACTAATGGTGAGACCCCATCTGCAGAGGATTTATCTTCTGCAGAAGTGGTGCATTTGCA
GGGTACAGAATGGGTGGATCTTTTTGTTGGAGAGATGATGAGTGCATCAAACATAGATGA
TGCTAAAGCGCGTGCTTCACGAGCTCTGGAGGCTTTTGAGAAGACCATATGTGCTCGTGC
AACAGAGGCAGCCTGCCGTTTCCAGAAGGAGAATATGATGCTCAAGCAGCAGTTAGAAGC
TCTTGTACAAGAGAATGCTATTTTCAAGCGAGCAGTTGCCATCCAGCATGAGCGTCAAAA
GGAATTCGAGAATAGAGGGAACGAGTTGAATCAGCTGAAGCAGTCGGTGGCTCAGTACCA
GGAGCAGCTTAGAACCCTTGAGGTCAATAACTATGCTCTCACGATGCACCTCAAGCAAGC
TCAACAAAGCAACAACTCCATTCCAGGGCGTTTCAACCCCGATGTCTTTTAGTATGTGTC
ATGTCCCTATTGGCTGTGTAACATACATAGGTAGCAACAGTAGTATCCTATCGTCACAGT
AGCAGCAAGTGTTTCCTAGAGATGAATGACGATATTAAGCTAGAACTTCTGTCTATTGAT
CAAAGTGCCCTTCTGCAGTTACTAGACAAAGGGTACTTTGTTCTGTTCATACAAGTTTTT
ATTTGTTTTTCTGCTGTTGTTTCAATTAGAGTATCCAAAGTTCATACAGTTCTATTCTTC
TTCTTCTGCTTTTAAGAAGATGTTCAACACATGATTGTTATGCTTTATTTGTTTCTTTCG
TCGGATTCAATTTCTGCTCC