Plant GARDEN
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TOP > About the Species(Solanum lycopersicum ) > genome data >Gene sequences

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SNP Detection
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Data List

All Markers Trait-Related Loci
Solanum lycopersicum

CDS Sequence

CDS ID

Solyc12g009000.1.1
CDS Infomation

LOW QUALITY:Harbinger transposase-derived nuclease (AHRD V3.3 *** A0A103Y2W0_CYNCS)
Sequence

ATGGAAATCACTTCTTTTTCTTCTTCATTTCCATCACAAGAAGATTTCAATTCTCTAAAC
TTTTTTCAAGAACTCGACTTTCTTTCTCCATCTTCTGATCATCATCATCATCAATCCATG
TCGAAAAAGATAAAAATTAACGATTTTGATCACAACCCAGTTGAGGAAATCCTAAATAAA
TTTCTGGGTGTCGAAAACGAAACGCACCCAGAATCAAAATCAGTTGAAAATCACACCCTT
TTTGATTACAAGAACCAAAAATTTGATTTTGATCATGGTGTTGTCTCTGGCACTAAACGT
GTTCGTGAAAATGCCAATGAGAATGAAGATGGTCTAGTTGAGGTTATCTCTGGTTCTGGC
TCTGGTTCTGGTTATTCTCAGCAGCCATTACAGCAGAGGAGGTTATGGGTGAAAAACAGA
TCAAATGCGTGGTGGGAGCAATGTAACCGTCCTGATTTCCCTGAAGAGGAATTTAAGAAA
GCATTTCATATGGGCAAAGCTACGTTTGATTTTATATGTTCTGAAATAGAATCAGTAGTG
ACAAAAAAGGACACGATGTTACGTATGGCGATACCTGTTCGTCAACGTGTAGCTGTATGC
ATTTGGAGATTGGCTACAGGAGAGCCACTCCGAGAAGTGTCTAGGCGATTTGGGTTAGGT
ATATCTACTTGTCATAAGCTCGTGCTCGAGGTATGCACAGCTATAAGAGGGGTGTTAATG
GCGAAATTCATACAATGGCCTGATGAACTTAAGATGGAGGAAATTAAACACGAGTTTGAA
ATCCTTTCCGGGATAGAAAATGTAGGTGGATCAATGTACACGACACATGTACCAATTATC
GCGCCTAAGGAAAGTGTCGCGAGTTACTTCAACAAAAGGCATACTGAGAGGAATCAGAAG
ACATCTTACTCCGTTACAGTACAAGGGGTTGTTGATCCAAAGGGGATTTTCACAGATGTT
TGTATAGGATGGCCTGGTTCGATGACAGATGATCAAGTCTTGGAAAAATCGATACTTTAT
GAAAGAGCAAACAGAGGAAACTTGAATGGTACTTACATTGTTGGGAGTTCAGGATTTCCA
TTAACGGATTGGATTTTAGTTCCGTTTACTCATCAGAATGTTACATGGACACAACATGCT
TTTAATGAGAAAGTGAATGATGTTCAAAGAGTTGCCAAAGAAGCGTTTATGAGATTGAAA
GCAAGATGGAGTTGTTTAAAGAAAAGAACAGAAGTGAAACTTCAAGATTTGCCTGTTGTT
CTTGGAGCTTGTTGTACACTTCACAATATCTGTGAGATTAGAGGTGAAGAATTACGTCAA
GAATTAAGGTTCGATTTGGTTGATGATGAAATGATCCCGGAAGTTGTTGTGAGATCAATG
AACGCGATGAAAGTAAGAGATCAGATTGCTCACAAACTATTACATCATAATCACTCAGGG
ACTAGTTTTCTATGA

Peptide Sequence

PEP ID

Solyc12g009000.1.1
PEP Infomation

LOW QUALITY:Harbinger transposase-derived nuclease (AHRD V3.3 *** A0A103Y2W0_CYNCS)
Sequence

MEITSFSSSFPSQEDFNSLNFFQELDFLSPSSDHHHHQSMSKKIKINDFDHNPVEEILNK
FLGVENETHPESKSVENHTLFDYKNQKFDFDHGVVSGTKRVRENANENEDGLVEVISGSG
SGSGYSQQPLQQRRLWVKNRSNAWWEQCNRPDFPEEEFKKAFHMGKATFDFICSEIESVV
TKKDTMLRMAIPVRQRVAVCIWRLATGEPLREVSRRFGLGISTCHKLVLEVCTAIRGVLM
AKFIQWPDELKMEEIKHEFEILSGIENVGGSMYTTHVPIIAPKESVASYFNKRHTERNQK
TSYSVTVQGVVDPKGIFTDVCIGWPGSMTDDQVLEKSILYERANRGNLNGTYIVGSSGFP
LTDWILVPFTHQNVTWTQHAFNEKVNDVQRVAKEAFMRLKARWSCLKKRTEVKLQDLPVV
LGACCTLHNICEIRGEELRQELRFDLVDDEMIPEVVVRSMNAMKVRDQIAHKLLHHNHSG
TSFL*

Transcript Sequence

Transcript ID

Solyc12g009000.1.1
Transcript Infomation

LOW QUALITY:Harbinger transposase-derived nuclease (AHRD V3.3 *** A0A103Y2W0_CYNCS)
Sequence

ATGGAAATCACTTCTTTTTCTTCTTCATTTCCATCACAAGAAGATTTCAATTCTCTAAAC
TTTTTTCAAGAACTCGACTTTCTTTCTCCATCTTCTGATCATCATCATCATCAATCCATG
TCGAAAAAGATAAAAATTAACGATTTTGATCACAACCCAGTTGAGGAAATCCTAAATAAA
TTTCTGGGTGTCGAAAACGAAACGCACCCAGAATCAAAATCAGTTGAAAATCACACCCTT
TTTGATTACAAGAACCAAAAATTTGATTTTGATCATGGTGTTGTCTCTGGCACTAAACGT
GTTCGTGAAAATGCCAATGAGAATGAAGATGGTCTAGTTGAGGTTATCTCTGGTTCTGGC
TCTGGTTCTGGTTATTCTCAGCAGCCATTACAGCAGAGGAGGTTATGGGTGAAAAACAGA
TCAAATGCGTGGTGGGAGCAATGTAACCGTCCTGATTTCCCTGAAGAGGAATTTAAGAAA
GCATTTCATATGGGCAAAGCTACGTTTGATTTTATATGTTCTGAAATAGAATCAGTAGTG
ACAAAAAAGGACACGATGTTACGTATGGCGATACCTGTTCGTCAACGTGTAGCTGTATGC
ATTTGGAGATTGGCTACAGGAGAGCCACTCCGAGAAGTGTCTAGGCGATTTGGGTTAGGT
ATATCTACTTGTCATAAGCTCGTGCTCGAGGTATGCACAGCTATAAGAGGGGTGTTAATG
GCGAAATTCATACAATGGCCTGATGAACTTAAGATGGAGGAAATTAAACACGAGTTTGAA
ATCCTTTCCGGGATAGAAAATGTAGGTGGATCAATGTACACGACACATGTACCAATTATC
GCGCCTAAGGAAAGTGTCGCGAGTTACTTCAACAAAAGGCATACTGAGAGGAATCAGAAG
ACATCTTACTCCGTTACAGTACAAGGGGTTGTTGATCCAAAGGGGATTTTCACAGATGTT
TGTATAGGATGGCCTGGTTCGATGACAGATGATCAAGTCTTGGAAAAATCGATACTTTAT
GAAAGAGCAAACAGAGGAAACTTGAATGGTACTTACATTGTTGGGAGTTCAGGATTTCCA
TTAACGGATTGGATTTTAGTTCCGTTTACTCATCAGAATGTTACATGGACACAACATGCT
TTTAATGAGAAAGTGAATGATGTTCAAAGAGTTGCCAAAGAAGCGTTTATGAGATTGAAA
GCAAGATGGAGTTGTTTAAAGAAAAGAACAGAAGTGAAACTTCAAGATTTGCCTGTTGTT
CTTGGAGCTTGTTGTACACTTCACAATATCTGTGAGATTAGAGGTGAAGAATTACGTCAA
GAATTAAGGTTCGATTTGGTTGATGATGAAATGATCCCGGAAGTTGTTGTGAGATCAATG
AACGCGATGAAAGTAAGAGATCAGATTGCTCACAAACTATTACATCATAATCACTCAGGG
ACTAGTTTTCTATGA