Plant GARDEN
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TOP > About the Species(Solanum lycopersicum ) > genome data >Gene sequences

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SNP Detection
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Data List

All Markers Trait-Related Loci
Solanum lycopersicum

CDS Sequence

CDS ID

Solyc12g008450.2.1
CDS Infomation

initiator tRNA phosphoribosyl transferase family protein (AHRD V3.3 *** AT2G40570.1)
Sequence

ATGGAGAATCTAGAAAACTTGAATACATACAAAGCTTCGAGAATTATAAAACGAAGTGAA
AATACTCTGTACAACGCTCTCCGATCAATTTACGAGGATTCCATATTCGTCGGCGAGATT
GCTCAGTTATGGCCGGAGCTTCCGCTGTTAGCAAATCTCCGTTGTGGACTTTGGTACTCT
ATGAAATTTCACTCTACTTGCTATTTCAAATCAACTGATGGACACACCAATAATTGGTCT
TTCAATACATCTCGACTTAATCTACATGTTGCACTTCTTGCTGGACAGAAGGGAGGGTGT
ATGATTGTTGATTCAACAAGGAAAGGGAAGCGGTTTCCAGATAGTATGTCAAAGACGATA
CCGATTTGGACGTGTGTGTTGAATCGTGCAATCAGGAATTATAGAACGAGATTTGGTTTG
AATGGCAGTGCAGAAAAGAATGAGTCAAATGATTGCGCTGAATGTGGTAATACTATTAAT
GAGGACTCATATAACTGGGATTGTTCCTTGCATCTCCCTTTGTGGGTCTCAAATACTGAA
AGAGTGCTTATTGAGGAGCGTTTAGACGGGTGGACCAAGGATCTGGAGGTCAGTGGAGCT
GACATTGCCTCCATTGCTTTATCCCTAAAAAAACCGCTACGCCCATTATGGATTTCACAA
AAAACTGTTATCTGGTTAAATGAAGTACCTGATTGTGATTCTTGGGATTTCACTCCAATA
ATACTTGTTTCAACGTCTTCCCCAAGTAGCAATTTACAGCAAAGAACAACCTCCGAATTT
AGTTGGAGGTACATAGCTGGAGCTGGAGACGATGAGGAAAGTTGGGCAAGGGGCCTGTCA
CCATCTCTTTTCTGGAAACATGCTTATGATCTCATAAACTCTGGTCCCGATACATGTAAT
AAGACGGTAGCTGATATTGTTGAAAAAGATAGGGTATACCGTGCACAAAGGGGAGAAAAT
GCTCCTCAAATATCTATTAAGCCTTCAAAATCTTCTTCGAATAGTGGCCATCTTCCTGCT
CAAGAACAACTAGGTCTGGAGCCTCTACATATGAACATAGACGAGAAGATTTATGATAAA
AATTCCATATCTTGGCTGGGGGAAACGAATCTAGCAGTTGGCACTACTCAACTCGCTAAG
GACGCATCTGGTGTCGATTGTGTATTGAGTTGTGATTTGGAGACTAATTCTTTTAGTTTC
AAGGAATCTGGAGCCCATTTAAACCTATCTATCGTGAGCTCGAAGTTTGACAGGTCTTCT
TTGTTAAGAAATCTTCCTTCAGCGGTAAATTTTGCCAAGAACAACTTGAGAAAAGGGAAG
AAACTCCTAGTTTGCTGCAATAGTGGGGAAGATATTAGCATCTGTGTATGCTTAGCAATC
TTGATGTCATTGTTCGATGACAAAGGGAACTTTGATGAAGGGAGATTTTTCAACGAGACA
CGAATCAATAAATTAGAATTAAGACGACGATTGGTATTTATCTGTCAATTTGCTGTGAAT
GCTCGTCCGTCAAGAGGGAATGTTAAACAAGTCTTTAGTTATCTTTGTGGAGGAAATGTT
GCGATAACTTCTTGA

Peptide Sequence

PEP ID

Solyc12g008450.2.1
PEP Infomation

initiator tRNA phosphoribosyl transferase family protein (AHRD V3.3 *** AT2G40570.1)
Sequence

MENLENLNTYKASRIIKRSENTLYNALRSIYEDSIFVGEIAQLWPELPLLANLRCGLWYS
MKFHSTCYFKSTDGHTNNWSFNTSRLNLHVALLAGQKGGCMIVDSTRKGKRFPDSMSKTI
PIWTCVLNRAIRNYRTRFGLNGSAEKNESNDCAECGNTINEDSYNWDCSLHLPLWVSNTE
RVLIEERLDGWTKDLEVSGADIASIALSLKKPLRPLWISQKTVIWLNEVPDCDSWDFTPI
ILVSTSSPSSNLQQRTTSEFSWRYIAGAGDDEESWARGLSPSLFWKHAYDLINSGPDTCN
KTVADIVEKDRVYRAQRGENAPQISIKPSKSSSNSGHLPAQEQLGLEPLHMNIDEKIYDK
NSISWLGETNLAVGTTQLAKDASGVDCVLSCDLETNSFSFKESGAHLNLSIVSSKFDRSS
LLRNLPSAVNFAKNNLRKGKKLLVCCNSGEDISICVCLAILMSLFDDKGNFDEGRFFNET
RINKLELRRRLVFICQFAVNARPSRGNVKQVFSYLCGGNVAITS*

Transcript Sequence

Transcript ID

Solyc12g008450.2.1
Transcript Infomation

initiator tRNA phosphoribosyl transferase family protein (AHRD V3.3 *** AT2G40570.1)
Sequence

AGGGTGAAAAATAAAGCTAACACCAAACTTATAGCAAATTTTCCGATCTGCAAACTCTGT
TTTCTTCTTCTTCAATGGAGAATCTAGAAAACTTGAATACATACAAAGCTTCGAGAATTA
TAAAACGAAGTGAAAATACTCTGTACAACGCTCTCCGATCAATTTACGAGGATTCCATAT
TCGTCGGCGAGATTGCTCAGTTATGGCCGGAGCTTCCGCTGTTAGCAAATCTCCGTTGTG
GACTTTGGTACTCTATGAAATTTCACTCTACTTGCTATTTCAAATCAACTGATGGACACA
CCAATAATTGGTCTTTCAATACATCTCGACTTAATCTACATGTTGCACTTCTTGCTGGAC
AGAAGGGAGGGTGTATGATTGTTGATTCAACAAGGAAAGGGAAGCGGTTTCCAGATAGTA
TGTCAAAGACGATACCGATTTGGACGTGTGTGTTGAATCGTGCAATCAGGAATTATAGAA
CGAGATTTGGTTTGAATGGCAGTGCAGAAAAGAATGAGTCAAATGATTGCGCTGAATGTG
GTAATACTATTAATGAGGACTCATATAACTGGGATTGTTCCTTGCATCTCCCTTTGTGGG
TCTCAAATACTGAAAGAGTGCTTATTGAGGAGCGTTTAGACGGGTGGACCAAGGATCTGG
AGGTCAGTGGAGCTGACATTGCCTCCATTGCTTTATCCCTAAAAAAACCGCTACGCCCAT
TATGGATTTCACAAAAAACTGTTATCTGGTTAAATGAAGTACCTGATTGTGATTCTTGGG
ATTTCACTCCAATAATACTTGTTTCAACGTCTTCCCCAAGTAGCAATTTACAGCAAAGAA
CAACCTCCGAATTTAGTTGGAGGTACATAGCTGGAGCTGGAGACGATGAGGAAAGTTGGG
CAAGGGGCCTGTCACCATCTCTTTTCTGGAAACATGCTTATGATCTCATAAACTCTGGTC
CCGATACATGTAATAAGACGGTAGCTGATATTGTTGAAAAAGATAGGGTATACCGTGCAC
AAAGGGGAGAAAATGCTCCTCAAATATCTATTAAGCCTTCAAAATCTTCTTCGAATAGTG
GCCATCTTCCTGCTCAAGAACAACTAGGTCTGGAGCCTCTACATATGAACATAGACGAGA
AGATTTATGATAAAAATTCCATATCTTGGCTGGGGGAAACGAATCTAGCAGTTGGCACTA
CTCAACTCGCTAAGGACGCATCTGGTGTCGATTGTGTATTGAGTTGTGATTTGGAGACTA
ATTCTTTTAGTTTCAAGGAATCTGGAGCCCATTTAAACCTATCTATCGTGAGCTCGAAGT
TTGACAGGTCTTCTTTGTTAAGAAATCTTCCTTCAGCGGTAAATTTTGCCAAGAACAACT
TGAGAAAAGGGAAGAAACTCCTAGTTTGCTGCAATAGTGGGGAAGATATTAGCATCTGTG
TATGCTTAGCAATCTTGATGTCATTGTTCGATGACAAAGGGAACTTTGATGAAGGGAGAT
TTTTCAACGAGACACGAATCAATAAATTAGAATTAAGACGACGATTGGTATTTATCTGTC
AATTTGCTGTGAATGCTCGTCCGTCAAGAGGGAATGTTAAACAAGTCTTTAGTTATCTTT
GTGGAGGAAATGTTGCGATAACTTCTTGAGCCAACATGAAAGTTTTTGAAGTCTTATAAA
TTCAATGTATTTTAGCCTCATTGTATTTTACTATATAGTATGATGTAGAAATTATGTTTT
CTACTTCATTTGTTGTTTCATAACTCTAAAATAATGTTTTCACAATTCAATGTGTATGAG
TTCATCAAATTACTACGTACTTAGAATCCATAAAGGGAATATAGATGGACTGTTTCTGAA
AGATCATTGATTATTACTACTTACAAATCCATAAAGGGAATACGACAATCCACC