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TOP > About the Species(Solanum lycopersicum ) > genome data >Gene sequences

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SNP Detection
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Data List

All Markers Trait-Related Loci
Solanum lycopersicum

CDS Sequence

CDS ID

Solyc12g006940.2.1
CDS Infomation

RING/U-box superfamily protein (AHRD V3.3 *** A0A061G9Z9_THECC)
Sequence

ATGGCTGTTACCTCGGAAGAACTTAATCAAGAGAACCCAACCGACAGATTTCCTTTGCTC
ATGGAGCAAGCAGAAAGTCGTGAGAGGAATGAACATGTTATTGATGTAGAACAAGGAAGT
AGCCCCTCATCATCAGGCTCATCTGATAATGATTCTCCTCATGAATTGGAAATACCCAAC
CATGAAAATAGACCATCAAATCGACATTCCGTCTCTTCTTCGTCCAACGAATCAGATTCT
CATAGCCCTTCTAGTGCTAGGAGAGCTGATGGTTCTGATCGTCGTTGGAGCCCATTTAAT
ACTCTGTTGTGGCTTTCCATTGAGCTAATATTCACCTTAGGACAGATTGGTGCTGCCGTT
GTCGTTTTATCCTTGTCAAAAGAGGAAAACCCAGAAACTCCATTATTTGCTTGGATTGTG
GGATATGCAACTGGATGTGCAGCAACCCTTCCTTTACTGTACTGGCGTTATCTTCTCCGT
TACCAAACCATCAGTCAGAGATCAGCTCAACTGCGTCAAGATTCACCCCAAGTCAATTCC
ACTGCAGAGCCAAATTCTTATATTACTATCTCATTAACTCGGTCCTCGGATGAGGAAGAT
GGAAGGAATACACCTACCGACATTTGGACCAGGCAAAGCAATGCAAGACTTGGTTCATTG
GTAGATCATTTCAAGATGGCCTTGGATTGCTTCTTTGCTGTGTGGTTTGTCGTTGGCAAT
GTTTGGATCTTTGGGGGGCACTCTTCTTCTTCTGAGGCTCCCAATCTGTACAGATTATGT
ATAGCTTTTCTTACCATTAGTTGCATTGGATATGCTATGCCTTTCATCTTGTGTGCGATG
ATATGCTGCTGCCTGCCTTGTATCATTTCAATCCTCGGTGTGCGTGAGAATATGCATGGA
GTGAGAGGAGCCACAGAAGAGTCCATCAACGCTCTTCCCACACTCAAGTACAGGGTCAAG
ACAGATGGAACTGGAAGTAATGAAAGTAAAAATCTAGAAGAGGAGGAAGGTGGTTGTGTA
GCTGCTGGCACAGAGAAGGAACGTGCCATATCAGGTGAAGATGCGGTGTGTTGTATTTGC
TTAGCAAAATATGAGGACAATGACGAACTGAGGGAATTGCCTTGCTCGCATTTCTTCCAT
ACACAGTGTGTAGATAAATGGCTGAAGATTAATGCGACTTGCCCCCTCTGCAAATCTGAA
ATTGACGCCAAGAACAGAGATCTACCTTCTGTAGAAGAGGAACCCCTCCAACAATCCTAA

Peptide Sequence

PEP ID

Solyc12g006940.2.1
PEP Infomation

RING/U-box superfamily protein (AHRD V3.3 *** A0A061G9Z9_THECC)
Sequence

MAVTSEELNQENPTDRFPLLMEQAESRERNEHVIDVEQGSSPSSSGSSDNDSPHELEIPN
HENRPSNRHSVSSSSNESDSHSPSSARRADGSDRRWSPFNTLLWLSIELIFTLGQIGAAV
VVLSLSKEENPETPLFAWIVGYATGCAATLPLLYWRYLLRYQTISQRSAQLRQDSPQVNS
TAEPNSYITISLTRSSDEEDGRNTPTDIWTRQSNARLGSLVDHFKMALDCFFAVWFVVGN
VWIFGGHSSSSEAPNLYRLCIAFLTISCIGYAMPFILCAMICCCLPCIISILGVRENMHG
VRGATEESINALPTLKYRVKTDGTGSNESKNLEEEEGGCVAAGTEKERAISGEDAVCCIC
LAKYEDNDELRELPCSHFFHTQCVDKWLKINATCPLCKSEIDAKNRDLPSVEEEPLQQS*

Transcript Sequence

Transcript ID

Solyc12g006940.2.1
Transcript Infomation

RING/U-box superfamily protein (AHRD V3.3 *** A0A061G9Z9_THECC)
Sequence

GGAGGAGTCGGTGGAGCAATTATGGGAGCTGACAAAATTTTGCCCTTTTTCGCATAAAAA
AGTTAAAAAAATCGAAGCCCTAATTTCAGAGAAATCTTCATACTGACGAACTTTATCGAT
CATCAAATATAATCGCTGGTAGGCTTTGCTTGTGAGTATAAGGTGGTAGCTGAACCAGTA
GCAATATTTTCTTGAGATTTATGGTTGAATGGCTGTTACCTCGGAAGAACTTAATCAAGA
GAACCCAACCGACAGATTTCCTTTGCTCATGGAGCAAGCAGAAAGTCGTGAGAGGAATGA
ACATGTTATTGATGTAGAACAAGGAAGTAGCCCCTCATCATCAGGCTCATCTGATAATGA
TTCTCCTCATGAATTGGAAATACCCAACCATGAAAATAGACCATCAAATCGACATTCCGT
CTCTTCTTCGTCCAACGAATCAGATTCTCATAGCCCTTCTAGTGCTAGGAGAGCTGATGG
TTCTGATCGTCGTTGGAGCCCATTTAATACTCTGTTGTGGCTTTCCATTGAGCTAATATT
CACCTTAGGACAGATTGGTGCTGCCGTTGTCGTTTTATCCTTGTCAAAAGAGGAAAACCC
AGAAACTCCATTATTTGCTTGGATTGTGGGATATGCAACTGGATGTGCAGCAACCCTTCC
TTTACTGTACTGGCGTTATCTTCTCCGTTACCAAACCATCAGTCAGAGATCAGCTCAACT
GCGTCAAGATTCACCCCAAGTCAATTCCACTGCAGAGCCAAATTCTTATATTACTATCTC
ATTAACTCGGTCCTCGGATGAGGAAGATGGAAGGAATACACCTACCGACATTTGGACCAG
GCAAAGCAATGCAAGACTTGGTTCATTGGTAGATCATTTCAAGATGGCCTTGGATTGCTT
CTTTGCTGTGTGGTTTGTCGTTGGCAATGTTTGGATCTTTGGGGGGCACTCTTCTTCTTC
TGAGGCTCCCAATCTGTACAGATTATGTATAGCTTTTCTTACCATTAGTTGCATTGGATA
TGCTATGCCTTTCATCTTGTGTGCGATGATATGCTGCTGCCTGCCTTGTATCATTTCAAT
CCTCGGTGTGCGTGAGAATATGCATGGAGTGAGAGGAGCCACAGAAGAGTCCATCAACGC
TCTTCCCACACTCAAGTACAGGGTCAAGACAGATGGAACTGGAAGTAATGAAAGTAAAAA
TCTAGAAGAGGAGGAAGGTGGTTGTGTAGCTGCTGGCACAGAGAAGGAACGTGCCATATC
AGGTGAAGATGCGGTGTGTTGTATTTGCTTAGCAAAATATGAGGACAATGACGAACTGAG
GGAATTGCCTTGCTCGCATTTCTTCCATACACAGTGTGTAGATAAATGGCTGAAGATTAA
TGCGACTTGCCCCCTCTGCAAATCTGAAATTGACGCCAAGAACAGAGATCTACCTTCTGT
AGAAGAGGAACCCCTCCAACAATCCTAAGGTGATGCAGAAACCAACTTCTTATGGTTGAA
ACACAGATCATCGCGGCTAGCTTGTTGCATGGGGAACCAGGAGAGTATATCCCAACTGTT
ACTTCTTCTGCTGTTGCTGCTACTGCTACTGCTGTTTCTACCACACGAATTTCAGTTTGT
ATAGTTGTAGCTCATACCAGGTATCCATAACAAGCTTGAAAGAAGAGGTAATTCCATTGT
TGATACCCTTACATCTCTCTCCTGCCTCACCAGCTATAT