Plant GARDEN
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Data List

All Markers Trait-Related Loci
Solanum lycopersicum

CDS Sequence

CDS ID

Solyc12g006470.2.1
CDS Infomation

viroid RNA-binding protein
Sequence

ATGGCCAAGACTAATGGATTTATGGGACATGATATGTTGGCACCATTTACTGCGGCATGG
ATGATTGATATGGGACCTTTAGTTATAGATAAAGCGGAGGGTTCTTATGTCTATGACGTA
AATGGAAAGAAGTACCTTGATTCTTTATCTGGTTTATGGTGCTCAGTATTAGGGGGGAGT
GAGCCTCGTCTTATTGAAGCTGCAAATAAACAACTCAATAAATTGGCATTTTACCACTCA
TTTTGGAATCGTACCACAAAGCCTTCTTTGGATCTTGCAAAGGAGCTCATAAATATGTTT
ACTGCAAATAAGATGGGAAAAGTTTTTTTCACAAGTAGTGGATCAGAAGCTAATGACACT
CAGGTGAAGTTGGTGTGGTATTACAACAATGCCATTGGGAGGCCAAACAAAAAGAAAATT
ATTTCTCGAAAAAATGCATACCATGGCTCCACTTATATGACTGCCGGTCTCTCCGGGCTT
CCATCACTACATCTAAAATTTGATTTACCACCTCCATATATTCTTCACACTGATTGCCCT
CATTATTGGAACTATCACTTGCCAGGTGAGACAGAAGAGGAGTACTCAACTAGGTTGGCA
AATAATTTGGAAAATCTTATACTCAAAGAGGGTCCTGAAACAGTTGCTGCTTTCATTGCG
GAACCAGTCATGGGAGGAGCAGGTGTTATAATTCCTCCAGCTACTTATTTCGAAAAGATT
CAAGCTGTTTTAAAGAAATATGACATTCTTTTCATCGCGGACGAGGTGATATGTGGATTT
GGAAGACTTGGGACAATGTTTGGCTGTGATAAGTACAACATTAAGCCTGATCTTGTCTCT
ATAGCAAAGGCTCTTTCTGGTGGATATATACCAATTGGTGCTGTGCTTGTAAGTGAAGAA
ATTTCTAAGGTCATAATGTCTCAAAGCAATCAACTTGGTGTTTTTTGCCATGGATTTACT
TATTCTGGACATCCTGTTGCGTGTGCGGTTGCATTGGAAGCACTAAAAATCTATAAGGAA
AAAAATATTACTGAGGTAGTGAATAAATTATCACCAAAGTTTCAAGAAGGTTTGAAAGCA
TTTATAGACAGTCCAATAATTGGAGAGATAAGGGGAACTGGTTTAGTACTTTCTACAGAG
TTTGTAGATAACAAATCTCCTAATGATCCTTTTCCACCAGAATGGGGTGTTGGTACATAT
TTTGGATCACAATGTCAAAAGCATGGTATGTTGGTGAGTTTTTCTGGTGATCATGTAAAT
ATGGCCCCTCCATTCACCTTGAGTCTTGAAGAACTTGATGAGATGATAAGCATATATGGG
AAAGCATTGAAGGATACTGAAAAAAGAGTGGAAGAATTGAAGTCTCAGAAGAAGTAA

Peptide Sequence

PEP ID

Solyc12g006470.2.1
PEP Infomation

viroid RNA-binding protein
Sequence

MAKTNGFMGHDMLAPFTAAWMIDMGPLVIDKAEGSYVYDVNGKKYLDSLSGLWCSVLGGS
EPRLIEAANKQLNKLAFYHSFWNRTTKPSLDLAKELINMFTANKMGKVFFTSSGSEANDT
QVKLVWYYNNAIGRPNKKKIISRKNAYHGSTYMTAGLSGLPSLHLKFDLPPPYILHTDCP
HYWNYHLPGETEEEYSTRLANNLENLILKEGPETVAAFIAEPVMGGAGVIIPPATYFEKI
QAVLKKYDILFIADEVICGFGRLGTMFGCDKYNIKPDLVSIAKALSGGYIPIGAVLVSEE
ISKVIMSQSNQLGVFCHGFTYSGHPVACAVALEALKIYKEKNITEVVNKLSPKFQEGLKA
FIDSPIIGEIRGTGLVLSTEFVDNKSPNDPFPPEWGVGTYFGSQCQKHGMLVSFSGDHVN
MAPPFTLSLEELDEMISIYGKALKDTEKRVEELKSQKK*

Transcript Sequence

Transcript ID

Solyc12g006470.2.1
Transcript Infomation

viroid RNA-binding protein
Sequence

ATGGCCCATAATTCACAACTTCTTTTCCTTATATATATACACAATTAACCTATCTTTCTC
TCTCTATATTTCATTTCTTGCTTTATCTTTCTATAATTTTTCAAAAAAGCTTCAAGGAAT
GGCCAAGACTAATGGATTTATGGGACATGATATGTTGGCACCATTTACTGCGGCATGGAT
GATTGATATGGGACCTTTAGTTATAGATAAAGCGGAGGGTTCTTATGTCTATGACGTAAA
TGGAAAGAAGTACCTTGATTCTTTATCTGGTTTATGGTGCTCAGTATTAGGGGGGAGTGA
GCCTCGTCTTATTGAAGCTGCAAATAAACAACTCAATAAATTGGCATTTTACCACTCATT
TTGGAATCGTACCACAAAGCCTTCTTTGGATCTTGCAAAGGAGCTCATAAATATGTTTAC
TGCAAATAAGATGGGAAAAGTTTTTTTCACAAGTAGTGGATCAGAAGCTAATGACACTCA
GGTGAAGTTGGTGTGGTATTACAACAATGCCATTGGGAGGCCAAACAAAAAGAAAATTAT
TTCTCGAAAAAATGCATACCATGGCTCCACTTATATGACTGCCGGTCTCTCCGGGCTTCC
ATCACTACATCTAAAATTTGATTTACCACCTCCATATATTCTTCACACTGATTGCCCTCA
TTATTGGAACTATCACTTGCCAGGTGAGACAGAAGAGGAGTACTCAACTAGGTTGGCAAA
TAATTTGGAAAATCTTATACTCAAAGAGGGTCCTGAAACAGTTGCTGCTTTCATTGCGGA
ACCAGTCATGGGAGGAGCAGGTGTTATAATTCCTCCAGCTACTTATTTCGAAAAGATTCA
AGCTGTTTTAAAGAAATATGACATTCTTTTCATCGCGGACGAGGTGATATGTGGATTTGG
AAGACTTGGGACAATGTTTGGCTGTGATAAGTACAACATTAAGCCTGATCTTGTCTCTAT
AGCAAAGGCTCTTTCTGGTGGATATATACCAATTGGTGCTGTGCTTGTAAGTGAAGAAAT
TTCTAAGGTCATAATGTCTCAAAGCAATCAACTTGGTGTTTTTTGCCATGGATTTACTTA
TTCTGGACATCCTGTTGCGTGTGCGGTTGCATTGGAAGCACTAAAAATCTATAAGGAAAA
AAATATTACTGAGGTAGTGAATAAATTATCACCAAAGTTTCAAGAAGGTTTGAAAGCATT
TATAGACAGTCCAATAATTGGAGAGATAAGGGGAACTGGTTTAGTACTTTCTACAGAGTT
TGTAGATAACAAATCTCCTAATGATCCTTTTCCACCAGAATGGGGTGTTGGTACATATTT
TGGATCACAATGTCAAAAGCATGGTATGTTGGTGAGTTTTTCTGGTGATCATGTAAATAT
GGCCCCTCCATTCACCTTGAGTCTTGAAGAACTTGATGAGATGATAAGCATATATGGGAA
AGCATTGAAGGATACTGAAAAAAGAGTGGAAGAATTGAAGTCTCAGAAGAAGTAAAAATC
TCATGAAAAAAAAGTTATTTCAAGTTTAAATAAAAACTTTGTTGTAGTTTTTTTTTTTTT
TTTGAGTGTTGCTACTCATAACATAAGAGTGTTTTATTATATTCTATTGTTTTAATGAGA
GCAACATTTGAATAAATTGTGTCATTTTTTATTTCAATATGATTGAAATTTTAAATTTCT
TTTAAGTGACATCGAGATGGTTAAAAATGATATACAACATTAATAGAATATAACATTGAT
TGG