Gene sequences

How To ▶︎

JA

EN

TOP > About the Species(Solanum lycopersicum ) > genome data >Gene sequences

Search

By Traits

Let’s Analyze!!

SNP Detection
(lang=JA only)

Other Tools

Data List

All

Trait-Related Loci

Solanum lycopersicum

CDS Sequence

CDS ID	Solyc12g006420.2.1
CDS Infomation	Topoisomerase II-associated protein PAT1 (AHRD V3.3 *** AT4G14990.1)
Sequence	ATGGAGAGATCCGATTGCAAAGATTTCATGGACTTGTCTAACTCTTCCAGCTCCATCTCA GATAATGCTCTCTTCGATGCATCACAATATGCATTTTTTGGTCGAGATATAGGAGAGGAA GTTGAATTGGGTGGTCTAGAGGAAGAAGGAAACAATTGTGTTCCCGCGGTGGATGGTGGA TTTGGTGATGTCGATACACATGAGTACCATTTGTTTGAAAAAGATGAGGGATCAGCTTTG GGGTCTTTATCTGACATAGATGATCTGGCAACTACATTTTCAAAGTTGAACAGAAATGTC GCAGGACCTAGGCATCCAGGAATTATTGGTGATCGTGGATCAGGATCGTTTTCGAGGGAA AGTTCATTGGCAGCTGAATGGGCAAAGGAAACTGATTTTCCTGATTGTTTTGATCAGCAT TTGTCTGACACTGAATGTTACCAGGATAGCAAAAGATGGTCTTCTCAGTCTCATTTATCT CCTCTGCATCTGTCAGAGTCAAAACCGTTGTATAGAACATCCTCAAATCCTGAGCAACCA CAACAACTTCAGCGCTTCTCAAGCGAACCCATTTTAGTGGCGAAGTCATCTTTCACTTCT CTCCCTCCTCCGGCTGGCAGATCTCTACAAGCCTCACCATACAGTTTATCACATCATCAA AGCATGCCATCTCTTGCTGCTGGACCTCACTCTCACTATTCAAATGCCAATCTCTCTACT TTGTCAAATTCTAATATCCATTTACCAGGCTTGTCTCATGGGCTTCATTATGGTGGAAAC ATGCCACAATGGACACTTCCCAGTCTTTCTCTCGATACCCGTCTACAAAATCACTGGACT AGTCATGCGAGTCTCAGCCATGGGGATCATTCTAGACTATTAAATAGTTTATCTCCACAT CAATTTCCTCGGAATGGTTTGTTATCTCCTCTGTTAATCTCTTCCCAGCAACTGCAGCAG CAAAGATTGCATCATTCAGTTCAACCATCTTTAGCTCATTTTTCTGCACTGCCTTCCCAG TTTAATTCCTTTCCTTCTCCTGCCCACCTGGGTAAGCATGGATTGGATGATTTTAGAGAT TCAAAATCTAAGTCATCACATAAAGGTAGACAGAATGTGCGCTTTTCTAAACTAAGCTCT GAAGGCAGTAGCCAAAAAAGTGAGAATAATGTTCCCAAGTTCAGATCTAAGTACATGACT GGTGATGAAATAGAGAGCATCCTGAAAATGCAGCATCCTGCAACACATTGCAATGATCCA TATGCGGACGACTATTATTACCAAGCTCGCCTTGCAAAGAAAGCAGCTGAGTCGAGGTCA AAACATCGTTTTTGTCCAAACAAGGAGCAACCTTCACGATCACGCAACAGTACAGACTCA CAGCCTCACCTCCATGTTGATGCTAAGGGGCAAATTTCATTTTCTTTCATCCGCAGGCCT CGTCCTCTTCTTGAGTATGATCCACCAGGATTTGTATGTAATGGCAGTGGTGATCAGAAG ATATCTGAGAAATCTTTGGAGCAGGAACCAATGTTTGCTGCTAGAATTACAGTAGAGGAT GGTTTTTATCTTCTCCTTGAGGTTGATGACATCAATAGGCTACTTCATTTTAGTCAGCCG CAAGATGGTGGTGTTCAGCTGAAGCGGAAGCGGCAGATTCTGTTGGAAGGCATGGCTGCC TCACTTCAGCTTGTTGATCCGCTTGGAAAAAGTGGCAGTTCAGTTGGGCTGACCCCTAAA GATGACATTGTGTTCTTATGGTTGGTGTCTCTTCCAAAAGGCCGGAAACTCATTTCAAGG TATCTTCAGCTTCTTGTACCTGGCAGTGAACTTGTAAGAATAGTTTGCATGGCAATTTTT CGCCATTTAAGGTTTTTGTTTGGCGGCTTTCCACCTGATCTAGAAGCTGCTGAGACTGTC ACTGCACTTGCAAAAACTGTCTCTGCATGTACAAGTCGCATGGACCTTAATTTGCTTAGT GCTTGTCTAGCTGCTGTTGTTTGTTCCTCAGAGCAGCCACCTCTTCGCCCTCTTGGAAGC CCTGCTGGAGATGGAGCCTCTGTTATTCTTAAATCTGTTCTTGAAAGGGCAACTCATCTC TTGACTGATCCTCAGACTGTTAGCGGCTTGAGCATGCCTAACCCTGCCCTTTGGCAGGCA TCTTTTGATGCCTTCTTTGGTTTACTTACTAAGTATTGTTTGAGTAAGTATGACTCTATA ATGCAATCGCTCATGTCACCAGCCCAGTCAAACACAGAACTGATTGGTTCAGAAGCTGCA AGAGCTGTAAGCAGAGAAATGCCAGTCGAACTCTTACGTGCTAGTCTCCCACACACGAAT GAACACCAGAGGAAGCTGTTGTTGAATTTTGCTCAGAGGTCCATGCCTGTAACTGGATTC AATGCTCATGGTGTAAGCAGTGGACAAATAAATCCTGAATCTGTAAGCTGTTAG

Peptide Sequence

PEP ID	Solyc12g006420.2.1
PEP Infomation	Topoisomerase II-associated protein PAT1 (AHRD V3.3 *** AT4G14990.1)
Sequence	MERSDCKDFMDLSNSSSSISDNALFDASQYAFFGRDIGEEVELGGLEEEGNNCVPAVDGG FGDVDTHEYHLFEKDEGSALGSLSDIDDLATTFSKLNRNVAGPRHPGIIGDRGSGSFSRE SSLAAEWAKETDFPDCFDQHLSDTECYQDSKRWSSQSHLSPLHLSESKPLYRTSSNPEQP QQLQRFSSEPILVAKSSFTSLPPPAGRSLQASPYSLSHHQSMPSLAAGPHSHYSNANLST LSNSNIHLPGLSHGLHYGGNMPQWTLPSLSLDTRLQNHWTSHASLSHGDHSRLLNSLSPH QFPRNGLLSPLLISSQQLQQQRLHHSVQPSLAHFSALPSQFNSFPSPAHLGKHGLDDFRD SKSKSSHKGRQNVRFSKLSSEGSSQKSENNVPKFRSKYMTGDEIESILKMQHPATHCNDP YADDYYYQARLAKKAAESRSKHRFCPNKEQPSRSRNSTDSQPHLHVDAKGQISFSFIRRP RPLLEYDPPGFVCNGSGDQKISEKSLEQEPMFAARITVEDGFYLLLEVDDINRLLHFSQP QDGGVQLKRKRQILLEGMAASLQLVDPLGKSGSSVGLTPKDDIVFLWLVSLPKGRKLISR YLQLLVPGSELVRIVCMAIFRHLRFLFGGFPPDLEAAETVTALAKTVSACTSRMDLNLLS ACLAAVVCSSEQPPLRPLGSPAGDGASVILKSVLERATHLLTDPQTVSGLSMPNPALWQA SFDAFFGLLTKYCLSKYDSIMQSLMSPAQSNTELIGSEAARAVSREMPVELLRASLPHTN EHQRKLLLNFAQRSMPVTGFNAHGVSSGQINPESVSC*

Transcript Sequence

Transcript ID	Solyc12g006420.2.1
Transcript Infomation	Topoisomerase II-associated protein PAT1 (AHRD V3.3 *** AT4G14990.1)
Sequence	ATTGAAACAAAGAGGAAGTCTCCAGTCTCTTTCTTCCCTTTACTTTCACACACGCATTTA ACCAAACACGTAATGTGCATATTCACGCTATGTCTTTTCTCTCCGTATTTCTTCGAAACC CCTAAAAACCTCTGCTTTTTTCTTTCATTTTTAGCAAATTTGAGGGTTTTTTTCTCTTTG ATTCGGTGAAAGATTCAATCTTTCTCCTTATCTGGGTCGGTGAACATATGGTTACGTTTG TTGTAATTTTTTTTTCAATTTATTTTGTGTGATTTTTGTTAAATTGTTATGGAGAGATCC GATTGCAAAGATTTCATGGACTTGTCTAACTCTTCCAGCTCCATCTCAGATAATGCTCTC TTCGATGCATCACAATATGCATTTTTTGGTCGAGATATAGGAGAGGAAGTTGAATTGGGT GGTCTAGAGGAAGAAGGAAACAATTGTGTTCCCGCGGTGGATGGTGGATTTGGTGATGTC GATACACATGAGTACCATTTGTTTGAAAAAGATGAGGGATCAGCTTTGGGGTCTTTATCT GACATAGATGATCTGGCAACTACATTTTCAAAGTTGAACAGAAATGTCGCAGGACCTAGG CATCCAGGAATTATTGGTGATCGTGGATCAGGATCGTTTTCGAGGGAAAGTTCATTGGCA GCTGAATGGGCAAAGGAAACTGATTTTCCTGATTGTTTTGATCAGCATTTGTCTGACACT GAATGTTACCAGGATAGCAAAAGATGGTCTTCTCAGTCTCATTTATCTCCTCTGCATCTG TCAGAGTCAAAACCGTTGTATAGAACATCCTCAAATCCTGAGCAACCACAACAACTTCAG CGCTTCTCAAGCGAACCCATTTTAGTGGCGAAGTCATCTTTCACTTCTCTCCCTCCTCCG GCTGGCAGATCTCTACAAGCCTCACCATACAGTTTATCACATCATCAAAGCATGCCATCT CTTGCTGCTGGACCTCACTCTCACTATTCAAATGCCAATCTCTCTACTTTGTCAAATTCT AATATCCATTTACCAGGCTTGTCTCATGGGCTTCATTATGGTGGAAACATGCCACAATGG ACACTTCCCAGTCTTTCTCTCGATACCCGTCTACAAAATCACTGGACTAGTCATGCGAGT CTCAGCCATGGGGATCATTCTAGACTATTAAATAGTTTATCTCCACATCAATTTCCTCGG AATGGTTTGTTATCTCCTCTGTTAATCTCTTCCCAGCAACTGCAGCAGCAAAGATTGCAT CATTCAGTTCAACCATCTTTAGCTCATTTTTCTGCACTGCCTTCCCAGTTTAATTCCTTT CCTTCTCCTGCCCACCTGGGTAAGCATGGATTGGATGATTTTAGAGATTCAAAATCTAAG TCATCACATAAAGGTAGACAGAATGTGCGCTTTTCTAAACTAAGCTCTGAAGGCAGTAGC CAAAAAAGTGAGAATAATGTTCCCAAGTTCAGATCTAAGTACATGACTGGTGATGAAATA GAGAGCATCCTGAAAATGCAGCATCCTGCAACACATTGCAATGATCCATATGCGGACGAC TATTATTACCAAGCTCGCCTTGCAAAGAAAGCAGCTGAGTCGAGGTCAAAACATCGTTTT TGTCCAAACAAGGAGCAACCTTCACGATCACGCAACAGTACAGACTCACAGCCTCACCTC CATGTTGATGCTAAGGGGCAAATTTCATTTTCTTTCATCCGCAGGCCTCGTCCTCTTCTT GAGTATGATCCACCAGGATTTGTATGTAATGGCAGTGGTGATCAGAAGATATCTGAGAAA TCTTTGGAGCAGGAACCAATGTTTGCTGCTAGAATTACAGTAGAGGATGGTTTTTATCTT CTCCTTGAGGTTGATGACATCAATAGGCTACTTCATTTTAGTCAGCCGCAAGATGGTGGT GTTCAGCTGAAGCGGAAGCGGCAGATTCTGTTGGAAGGCATGGCTGCCTCACTTCAGCTT GTTGATCCGCTTGGAAAAAGTGGCAGTTCAGTTGGGCTGACCCCTAAAGATGACATTGTG TTCTTATGGTTGGTGTCTCTTCCAAAAGGCCGGAAACTCATTTCAAGGTATCTTCAGCTT CTTGTACCTGGCAGTGAACTTGTAAGAATAGTTTGCATGGCAATTTTTCGCCATTTAAGG TTTTTGTTTGGCGGCTTTCCACCTGATCTAGAAGCTGCTGAGACTGTCACTGCACTTGCA AAAACTGTCTCTGCATGTACAAGTCGCATGGACCTTAATTTGCTTAGTGCTTGTCTAGCT GCTGTTGTTTGTTCCTCAGAGCAGCCACCTCTTCGCCCTCTTGGAAGCCCTGCTGGAGAT GGAGCCTCTGTTATTCTTAAATCTGTTCTTGAAAGGGCAACTCATCTCTTGACTGATCCT CAGACTGTTAGCGGCTTGAGCATGCCTAACCCTGCCCTTTGGCAGGCATCTTTTGATGCC TTCTTTGGTTTACTTACTAAGTATTGTTTGAGTAAGTATGACTCTATAATGCAATCGCTC ATGTCACCAGCCCAGTCAAACACAGAACTGATTGGTTCAGAAGCTGCAAGAGCTGTAAGC AGAGAAATGCCAGTCGAACTCTTACGTGCTAGTCTCCCACACACGAATGAACACCAGAGG AAGCTGTTGTTGAATTTTGCTCAGAGGTCCATGCCTGTAACTGGATTCAATGCTCATGGT GTAAGCAGTGGACAAATAAATCCTGAATCTGTAAGCTGTTAGTGGAGATGCTAAGATGCC ACAACTGCCTATAGTTCTCAAGATCACCATCTGGCTGCTTTTTTCAGAACACAACGTCGT GCTTTACCTCCATGCCAGTAGAAATGTTGAAGGCTAGAAGCAAGGAAAGCGATGGGGTTA TTGGTCGCTCCTTTTAGTGCTTCTCATCCAAAGAGCTTATTTTTCAATGCTCTTCTGTAA ACTTGGAGTAAAGCTGGAAAGATAGGATGTACAGGCCATTTCCTACTTGGCTATCTCCCC TCTCTTTATCGGGGAAGAAGGTGTTCGTTCACCTGAAGTGAACGTTGGCTCATAGGACTC AATGGTTCAACTCTGCAGGTTTGATAGGAGGATACATTTGCTAGACTTGAAACTTTTAAC ATGGATGATAACTGTAACAGTAATTACATGCTCTTGTTCATGACTATTATTTTACTGTAA CATTTCCCTTTATTGTTTACCAAGTTGATTTGAACTTTGTCATCCCCTGTCAATGGTTCA GGTATATGCCACTGAACATTATAGCTTTTACCAGTGTTAGCATGTCTTGTTAAGTGCTGG ATTTTTCCCAGCCAATCGAAATCGATAGTTTATGTATGTTAGAGCAGTGTTTTTTTTGCT ACTTAGCAATTTATCATATATCATATATTACTATTACTTCAAGTTAGGGGGCAAAGGACA TAAATCGCATAC