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TOP > About the Species(Solanum lycopersicum ) > genome data >Gene sequences

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SNP Detection
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Data List

All Markers Trait-Related Loci
Solanum lycopersicum

CDS Sequence

CDS ID

Solyc12g006380.2.1
CDS Infomation

2-oxoglutarate-dependent dioxygenase
Sequence

ATGACAACCTCCAACACACAACAAAGCTATGACAAAACAAGTGAACTAAAAGCCTTTGAT
GACACAAAAGCAGGTGTCAAAGGACTTATTGATAGTGGAATTACTAAAGTACCTCAAATA
TTCATTCATCCAGAGGCCTTAGAAAATAAAACCACAAATCCCAAAAATACACATTTCATT
TTCCCTTTAATAGACCTCCAAAACATCAGCATTAACAACAAAGAGATAGTGAAACAAATT
CAAGAAGCATCAGAGACATGGGGTTTCTTTCAAGTTATCAATCATGGTATCCCCGTCCCC
GTCCTAGACGAAATGTTGCGTGGGGCACGACGTTTTCACGATCAAGATATCGACGTTAAA
AAGCCATACTATAGTCGAGATATTGCAAGGAAAGTTATGTACAATTGCAATTTTGATCTA
TTTAGTGAGAAATCTCTTGCAGCAAATTGGAGAGACTCACTTTACTCTGTCATGGCTCCT
AATCCTGCTACTCCCGAGGAAATCCCCGAGACATGCAGGGAAATCACAATTGAGTACTCA
AATTATGTGATGAATTTGGGATACACATTGCTTGAATTATTTTCAGAAGGACTTGGTTTA
AAACCAAACCATCTCAAAGAAATGGGATGTGCTGAGGGACTAGGCATTTTGTGCAATTAC
TACCCTAAATGTCCACAACCAGAAATTGCAATTGGCACAAGTAGACATGCTGATAATGAT
TTTTTCACAGTGCTTTTGCAAGATGATATTGGTGGACTTCAAGTTCTTCACAAGAATCAA
TGGGTTGATGTTCCTCCTACTCATGGAGCTTTAGTTGTCAATATTGGTGACATTCTTCAG
CTTATATCGAATGACAAATATAAGAGCGTAGTTCACAGAGTATTGGCAAATACAATTGGT
CCAAGAATATCAATAGCAAGTTTCTTCAGCACAGGGCCATTTTCAACTTCTAGAATTTAT
GGACCAATTGAGGAATTATTATCAAAAGATAATCCTCCAAAGTATAGATCAACAACAATG
AAGGACTTCTTTGAATATTCTAATAAAAAAGGACTTGATGGCAATTCTAATTTGTCTCAC
TACAAAATAATATGA

Peptide Sequence

PEP ID

Solyc12g006380.2.1
PEP Infomation

2-oxoglutarate-dependent dioxygenase
Sequence

MTTSNTQQSYDKTSELKAFDDTKAGVKGLIDSGITKVPQIFIHPEALENKTTNPKNTHFI
FPLIDLQNISINNKEIVKQIQEASETWGFFQVINHGIPVPVLDEMLRGARRFHDQDIDVK
KPYYSRDIARKVMYNCNFDLFSEKSLAANWRDSLYSVMAPNPATPEEIPETCREITIEYS
NYVMNLGYTLLELFSEGLGLKPNHLKEMGCAEGLGILCNYYPKCPQPEIAIGTSRHADND
FFTVLLQDDIGGLQVLHKNQWVDVPPTHGALVVNIGDILQLISNDKYKSVVHRVLANTIG
PRISIASFFSTGPFSTSRIYGPIEELLSKDNPPKYRSTTMKDFFEYSNKKGLDGNSNLSH
YKII*

Transcript Sequence

Transcript ID

Solyc12g006380.2.1
Transcript Infomation

2-oxoglutarate-dependent dioxygenase
Sequence

CTTTAATTGAAGTACTTGTTTGTTCTCTCTTAAGGATCGGTTCGAAAGTTTAAGTTTGAG
TTCTCTGTGATCTCAATCAACAGATTTATTTGTTTTTGCTCTTCTAAAAAGCAGATTTCA
ATACTGATGACAACCTCCAACACACAACAAAGCTATGACAAAACAAGTGAACTAAAAGCC
TTTGATGACACAAAAGCAGGTGTCAAAGGACTTATTGATAGTGGAATTACTAAAGTACCT
CAAATATTCATTCATCCAGAGGCCTTAGAAAATAAAACCACAAATCCCAAAAATACACAT
TTCATTTTCCCTTTAATAGACCTCCAAAACATCAGCATTAACAACAAAGAGATAGTGAAA
CAAATTCAAGAAGCATCAGAGACATGGGGTTTCTTTCAAGTTATCAATCATGGTATCCCC
GTCCCCGTCCTAGACGAAATGTTGCGTGGGGCACGACGTTTTCACGATCAAGATATCGAC
GTTAAAAAGCCATACTATAGTCGAGATATTGCAAGGAAAGTTATGTACAATTGCAATTTT
GATCTATTTAGTGAGAAATCTCTTGCAGCAAATTGGAGAGACTCACTTTACTCTGTCATG
GCTCCTAATCCTGCTACTCCCGAGGAAATCCCCGAGACATGCAGGGAAATCACAATTGAG
TACTCAAATTATGTGATGAATTTGGGATACACATTGCTTGAATTATTTTCAGAAGGACTT
GGTTTAAAACCAAACCATCTCAAAGAAATGGGATGTGCTGAGGGACTAGGCATTTTGTGC
AATTACTACCCTAAATGTCCACAACCAGAAATTGCAATTGGCACAAGTAGACATGCTGAT
AATGATTTTTTCACAGTGCTTTTGCAAGATGATATTGGTGGACTTCAAGTTCTTCACAAG
AATCAATGGGTTGATGTTCCTCCTACTCATGGAGCTTTAGTTGTCAATATTGGTGACATT
CTTCAGCTTATATCGAATGACAAATATAAGAGCGTAGTTCACAGAGTATTGGCAAATACA
ATTGGTCCAAGAATATCAATAGCAAGTTTCTTCAGCACAGGGCCATTTTCAACTTCTAGA
ATTTATGGACCAATTGAGGAATTATTATCAAAAGATAATCCTCCAAAGTATAGATCAACA
ACAATGAAGGACTTCTTTGAATATTCTAATAAAAAAGGACTTGATGGCAATTCTAATTTG
TCTCACTACAAAATAATATGAATTTTGATATGTTGGAGTAAAAATAATGTTTTTTTTTGT
TTAACCAAAAAAAAAAAGATTATCTACCTTAAGAATAAAAAGATGTTGCATTTGTACTTT
TGTATTTGTTTTTGTTTGATATAAGAAATAAGAATGTGAGATTATTTATTACGTA