Plant GARDEN
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SNP Detection
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Data List

All Markers Trait-Related Loci
Solanum lycopersicum

CDS Sequence

CDS ID

Solyc12g005900.2.1
CDS Infomation

RecQ-mediated genome instability protein 1 (AHRD V3.3 *** A0A151RRF7_CAJCA)
Sequence

ATGGGCAGAAGACGCCACCAAATCATCTGTTCCTCCGACGAAGAAGACGACGGCGACGAC
GAACCTCAGCAATTCGCCGGCGGCAATGAAGAAAATGAAAATCCTAATAACATAGAAATG
GAAATTCTAGAATCATCTACTAACTTCCAATCAGTTACCCTAAATTCTCCCATCCAGAAC
CCTACACCTGATCATGAGCCAAACGTCGACATTTATGAAGTTATACGAGCTTCGGATTGT
GGTATTGGTCGGGTATTGGAAAATTTAGGGCTAAGATTGCGGAGGGAATGGTTAGAATCA
TGTGTTGGAGGACTTGAAGGATCAGTAGTAGGAGAGTTTTCTGGATTGGATGATACGACC
AAGGCGAAACTTTGTTTCGAGCAGTTTTTGTACTCGGATATGATTTTTTGTGGTGCAGGA
ATGCTTCCAAGGGACGTTCACAAGCTGCATTTGGTTGATCTTAAAGGGCCCTTTGTTCTT
CAGGTAGATGAGATTGTGAATATCAGTTGTCCTCTTCGAGATAGGTATCAGAAAGTAGCT
GCTGGAATAAAGAGGTGTCTGAAATTGTCCATGACTGATGGCATTCAGCGAGTGTTTGGG
ATGGAGTACAGGCCTATAAAAGATCTCGATGTTCTAGCTCCTTCTGGACTGAAGGTTGCT
ATCTGTAATGTTCATGTTAGGCATGGAATTCTGATGTTGGTCCCTGAAGTTATTGAAGTT
CTGGGTGGGATGGTGGAAGACTTAGAAGAAGCAAGGAAGCGGCTAGTTAATGAAATAAAT
AAGCCACCAAGGGGGAAAAGAAACAACCTCATCACTTTTGGTTATTTAGTTACTTCGTCT
ATGCCCAATGCCAGAACAAGGTCTGGTGTGGTTCCTCCTTTGGCAACTAGAGCTATTGCT
GCTGCATGGCCACGAGAAGGTGTTACTGTTCCAGAGCACTCTGATACTTCCTCAAGACAA
AATATGCAATTTCAGGTTCATGAACGAGGAACATCTGGCATTGCTACTACTGCAAGTGAA
GAAATTCATCCCGTTAGATCTGGGCTACCATCTTCTACGACATTCATCACTCCTGTTTAT
AGAAGAGAGGCTCAATCTAATATCCCATCTACTCCAGCTGTTTCTGTCCCATTCAATAGG
AACGCTGAACCTACCTTTTCATCTGATGCAGCTAGTCATGCAGAGGATATCCATATGGCT
GACATGACCACTGAAGACATTGATGTTGCAATTAGAAGGGAACATAATGACACTGTCCTT
TCATCTTTGTCTTCCATGGATGTGGAGGAACTTTTGTCAGATGTTAGAAGTGACCCTACC
ACACCTGCCAGTAGCAGGACCAGAGGAAGCGTTTGTGTGTCTAGCGGTAGTTTCCATAAT
GAAGATGTAACACCAGATACATTGTCTACTGCAGCAATTGACGTTGATCAAATTGATTTG
GTTGATGAATTGGACCATCCATATATACTTTCTGGAGCGAAGGAAAACCCTTTCACTTAC
TTAGCTAGTCTGTCAGCTAAGCAGGCTGGTGTGAATGGCAGTGCTTCCACTGTTACAGGA
AAAATTAAGTGCTTTCTTACTGGTGTGAAGGGCTTTCAGTATAAACAGAGTAGTAAATAC
GAGCTTCGGGTTTATGTTGATGATGGCAGCCTAATCTCTGAGATCCTTATAGATCATGCT
CTTGTGCAGGAAAAAATAGGCTTTTCTCCTGCAGAGGTAAATGCTGCTCTTAGTTCTTCA
GATGGCAAACGAGTCAGTGACACGAAGGAGACTCTGAAATGTTTCCAGAAATTCTTGATT
AATTTTGAGGGAACAATGCTTGTTCATTTGAATGAAGAATCTCCAATTCCAGTTGCTACT
GAAATGAACCAGGGGTGCTCTGCCTCTGATGCATGGTTGCTTCTCAAAAGACTAAAGCCT
TCTACTTCTCCGCGACAACATCATCTTCATCACTCAGAAACCATCAATTTATCCCCTTGA

Peptide Sequence

PEP ID

Solyc12g005900.2.1
PEP Infomation

RecQ-mediated genome instability protein 1 (AHRD V3.3 *** A0A151RRF7_CAJCA)
Sequence

MGRRRHQIICSSDEEDDGDDEPQQFAGGNEENENPNNIEMEILESSTNFQSVTLNSPIQN
PTPDHEPNVDIYEVIRASDCGIGRVLENLGLRLRREWLESCVGGLEGSVVGEFSGLDDTT
KAKLCFEQFLYSDMIFCGAGMLPRDVHKLHLVDLKGPFVLQVDEIVNISCPLRDRYQKVA
AGIKRCLKLSMTDGIQRVFGMEYRPIKDLDVLAPSGLKVAICNVHVRHGILMLVPEVIEV
LGGMVEDLEEARKRLVNEINKPPRGKRNNLITFGYLVTSSMPNARTRSGVVPPLATRAIA
AAWPREGVTVPEHSDTSSRQNMQFQVHERGTSGIATTASEEIHPVRSGLPSSTTFITPVY
RREAQSNIPSTPAVSVPFNRNAEPTFSSDAASHAEDIHMADMTTEDIDVAIRREHNDTVL
SSLSSMDVEELLSDVRSDPTTPASSRTRGSVCVSSGSFHNEDVTPDTLSTAAIDVDQIDL
VDELDHPYILSGAKENPFTYLASLSAKQAGVNGSASTVTGKIKCFLTGVKGFQYKQSSKY
ELRVYVDDGSLISEILIDHALVQEKIGFSPAEVNAALSSSDGKRVSDTKETLKCFQKFLI
NFEGTMLVHLNEESPIPVATEMNQGCSASDAWLLLKRLKPSTSPRQHHLHHSETINLSP*

Transcript Sequence

Transcript ID

Solyc12g005900.2.1
Transcript Infomation

RecQ-mediated genome instability protein 1 (AHRD V3.3 *** A0A151RRF7_CAJCA)
Sequence

CAAAAGAATTCAAATTTTTTCAGGAAAAACAATGGGCAGAAGACGCCACCAAATCATCTG
TTCCTCCGACGAAGAAGACGACGGCGACGACGAACCTCAGCAATTCGCCGGCGGCAATGA
AGAAAATGAAAATCCTAATAACATAGAAATGGAAATTCTAGAATCATCTACTAACTTCCA
ATCAGTTACCCTAAATTCTCCCATCCAGAACCCTACACCTGATCATGAGCCAAACGTCGA
CATTTATGAAGTTATACGAGCTTCGGATTGTGGTATTGGTCGGGTATTGGAAAATTTAGG
GCTAAGATTGCGGAGGGAATGGTTAGAATCATGTGTTGGAGGACTTGAAGGATCAGTAGT
AGGAGAGTTTTCTGGATTGGATGATACGACCAAGGCGAAACTTTGTTTCGAGCAGTTTTT
GTACTCGGATATGATTTTTTGTGGTGCAGGAATGCTTCCAAGGGACGTTCACAAGCTGCA
TTTGGTTGATCTTAAAGGGCCCTTTGTTCTTCAGGTAGATGAGATTGTGAATATCAGTTG
TCCTCTTCGAGATAGGTATCAGAAAGTAGCTGCTGGAATAAAGAGGTGTCTGAAATTGTC
CATGACTGATGGCATTCAGCGAGTGTTTGGGATGGAGTACAGGCCTATAAAAGATCTCGA
TGTTCTAGCTCCTTCTGGACTGAAGGTTGCTATCTGTAATGTTCATGTTAGGCATGGAAT
TCTGATGTTGGTCCCTGAAGTTATTGAAGTTCTGGGTGGGATGGTGGAAGACTTAGAAGA
AGCAAGGAAGCGGCTAGTTAATGAAATAAATAAGCCACCAAGGGGGAAAAGAAACAACCT
CATCACTTTTGGTTATTTAGTTACTTCGTCTATGCCCAATGCCAGAACAAGGTCTGGTGT
GGTTCCTCCTTTGGCAACTAGAGCTATTGCTGCTGCATGGCCACGAGAAGGTGTTACTGT
TCCAGAGCACTCTGATACTTCCTCAAGACAAAATATGCAATTTCAGGTTCATGAACGAGG
AACATCTGGCATTGCTACTACTGCAAGTGAAGAAATTCATCCCGTTAGATCTGGGCTACC
ATCTTCTACGACATTCATCACTCCTGTTTATAGAAGAGAGGCTCAATCTAATATCCCATC
TACTCCAGCTGTTTCTGTCCCATTCAATAGGAACGCTGAACCTACCTTTTCATCTGATGC
AGCTAGTCATGCAGAGGATATCCATATGGCTGACATGACCACTGAAGACATTGATGTTGC
AATTAGAAGGGAACATAATGACACTGTCCTTTCATCTTTGTCTTCCATGGATGTGGAGGA
ACTTTTGTCAGATGTTAGAAGTGACCCTACCACACCTGCCAGTAGCAGGACCAGAGGAAG
CGTTTGTGTGTCTAGCGGTAGTTTCCATAATGAAGATGTAACACCAGATACATTGTCTAC
TGCAGCAATTGACGTTGATCAAATTGATTTGGTTGATGAATTGGACCATCCATATATACT
TTCTGGAGCGAAGGAAAACCCTTTCACTTACTTAGCTAGTCTGTCAGCTAAGCAGGCTGG
TGTGAATGGCAGTGCTTCCACTGTTACAGGAAAAATTAAGTGCTTTCTTACTGGTGTGAA
GGGCTTTCAGTATAAACAGAGTAGTAAATACGAGCTTCGGGTTTATGTTGATGATGGCAG
CCTAATCTCTGAGATCCTTATAGATCATGCTCTTGTGCAGGAAAAAATAGGCTTTTCTCC
TGCAGAGGTAAATGCTGCTCTTAGTTCTTCAGATGGCAAACGAGTCAGTGACACGAAGGA
GACTCTGAAATGTTTCCAGAAATTCTTGATTAATTTTGAGGGAACAATGCTTGTTCATTT
GAATGAAGAATCTCCAATTCCAGTTGCTACTGAAATGAACCAGGGGTGCTCTGCCTCTGA
TGCATGGTTGCTTCTCAAAAGACTAAAGCCTTCTACTTCTCCGCGACAACATCATCTTCA
TCACTCAGAAACCATCAATTTATCCCCTTGATGTCTCGTTCATTCTATGGAGAATTTCAA
AACCACGAGAGCAAGGTGAGTTACAGAGTGACATTGCTCAATTCAGAAAGTTGTTGCTGA
CGCCCTCAGAAGCAATGGCGTAAATGCAGAAATAGTTCACCTGTGATTCAAACAATGAAA
TGACTTCTCAAATTGCGGAGCCCAGGGTGTTTGATTGGGGTTCATCCTAACCTTCTTCCT
CGGAAAATTACAATGTATATGTGAGGACATATAAGGTCAATTAGCTTGATTCATTTTATT
ATCTTCTATTTCTAGATTATTTAAGAATTTGAATTACTATATATGAACTAGAAATTCTGT
TCGAACATAGATTTTGAAGTTTAATTGATATATTAGTTCTTTTTTCCCC