Plant GARDEN
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SNP Detection
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Data List

All Markers Trait-Related Loci
Solanum lycopersicum

CDS Sequence

CDS ID

Solyc12g005470.2.1
CDS Infomation

RING/U-box superfamily protein (AHRD V3.3 *** AT2G20650.2)
Sequence

ATGGGTATGGCAAAAAGATTATATTTTTTGAGGTTTAAGAGGAAAAAGTATGGAGTTTTG
CTTAGAGTTCTTTTTAGTTTATGGTTCATCCTTGAAGGGATTTGCCCAGTAATGGGTGTC
AGGCCTCTCAGAGAAAGATACCGTTCGTGGGGAGATGAGTGGCTTCTGGTAAGAAAGGAT
GAGAATGAATTGGGGCCTTTTTCTGCTTGGAATATAACAGGAACTTACAGAGGGTCTTGG
AGGTTCCTAGATTCAACAAATAGCTCTTCCAGGTTTCCTGATTTTAGGAAGTCCAATGGC
AACTCGGTCCTTGAATTGATAAGTAATCCAACAAAAATAACTGGTGTACATTATATTCAG
GGTGCAATAATTTTCCATGATGTGTTTGACAATGAACATGGAGTTGGTGCTGCACAAATA
AGGGTAGAAGGTGTATATATATGGCCATTTAGACAACTTCGAATGGTAGCTTACAGTGGC
AAAGATGGTGAGTTTGGACAGGAAGACGATTATCTATTATCAAATCCATATCACTTGCTT
GGAGTTTTCTCGTCCCAGATATTCCAGGAGTCTTCTCGAGATAAGATTTGGAAAAAGAAA
CACTCACCGTTTTACGAGATGGAGAAAAATTGTAATATAGAAATTGCTGCACAAATTGCT
CGTGTCTCATCCTCCTCAAATGATGCAGCTCGTGACCATTATCAACTAGAAGGATTGATA
GAGAGCCCTTCAGTGGATGCTGACGGGGACTGTTTCTCACCGATGCTTTTGAATGCTACT
TCTGTCAATATAGAGGTTTACTACAACAAAGCGGTGAACTACACATTGATGGTCACATTT
ATATCTTTTCTGCAAGTGCTCCTTCTGATTCGACAAATGGAACATAGCAACACCCAATCA
GGAGCTGCGAAAGTTTCAATTCTGATGATTGGACAACAGGCTATCATGGATGCTTATCTT
TGTCTTTTGCATCTGACCGCAGGGATACTTGTTGAATCCCTTTTCAATGCTTTTGCAACT
GCTGCATTCTTCAAGTTTGTTGTGTTCTCGATCTTTGAGATGAGATATCTACTTGCTATA
TGGAAGGCAAATAGGCCCATGAATAGCGTAGAGGGTTGGGAAGCAATGAGGCGTGAATTG
TCAGTACTTTACAGCCGTTTCTATGGGATCCTTTTAGGCGGACTGTTGTTCATGTATGAG
TTTCACAAGTTTCTGCGCCCTATTCTTCTACTTTTACACTCATTCTGGTTACCTCAAATT
GTAACTAATGTCATTCGTGACTCAAGAAAACCATTGCACCCTCATTACATCTTGGGAATG
ACTATTACGCGTTTGGCAATTCCATTATATGTCTTTGGCTGTCCTCACAATTTCATGCGT
ATAGAGCCTGATAAGAATTGGTGCATCTGCTTGGGAGTTTTTATTGTGCTGCAGGCATCA
ATTCTTCTGTTGCAGCATTACCTTGGATCTCGGTGGTTCATTCCACGTCAGATTTTACCT
GAGAAGTATAACTATTATAGAAGGTTTGATCAGGGTGCAAATCACGCCACTGACTGTGTT
ATTTGCATGACTGCTATTGATCATACTCAACGCTCAAATAATTGCATGGTGACACCTTGT
GATCATTTCTTTCACTCTGGTTGTTTGCAAAGATGGATGGACATAAAGATGGAGTGTCCA
ACATGCCGACGTCCTCTTCCACCCGCTTGA

Peptide Sequence

PEP ID

Solyc12g005470.2.1
PEP Infomation

RING/U-box superfamily protein (AHRD V3.3 *** AT2G20650.2)
Sequence

MGMAKRLYFLRFKRKKYGVLLRVLFSLWFILEGICPVMGVRPLRERYRSWGDEWLLVRKD
ENELGPFSAWNITGTYRGSWRFLDSTNSSSRFPDFRKSNGNSVLELISNPTKITGVHYIQ
GAIIFHDVFDNEHGVGAAQIRVEGVYIWPFRQLRMVAYSGKDGEFGQEDDYLLSNPYHLL
GVFSSQIFQESSRDKIWKKKHSPFYEMEKNCNIEIAAQIARVSSSSNDAARDHYQLEGLI
ESPSVDADGDCFSPMLLNATSVNIEVYYNKAVNYTLMVTFISFLQVLLLIRQMEHSNTQS
GAAKVSILMIGQQAIMDAYLCLLHLTAGILVESLFNAFATAAFFKFVVFSIFEMRYLLAI
WKANRPMNSVEGWEAMRRELSVLYSRFYGILLGGLLFMYEFHKFLRPILLLLHSFWLPQI
VTNVIRDSRKPLHPHYILGMTITRLAIPLYVFGCPHNFMRIEPDKNWCICLGVFIVLQAS
ILLLQHYLGSRWFIPRQILPEKYNYYRRFDQGANHATDCVICMTAIDHTQRSNNCMVTPC
DHFFHSGCLQRWMDIKMECPTCRRPLPPA*

Transcript Sequence

Transcript ID

Solyc12g005470.2.1
Transcript Infomation

RING/U-box superfamily protein (AHRD V3.3 *** AT2G20650.2)
Sequence

TTTGGATATATTGTCAATGTCTTTACGACGTCCATGAAATATTTCGACCATTTCATTTTG
GAAATTCAAATCACAAAAATTTCATAAACTATATCACATGAAAATCGATAAAATCTGCGG
ACATCCATAAAAATTTGGACAAAAATAATGTCAAAATTTTGGATCAACAAAAAATCATGA
AAGCTTACAAATCACATAAAAAATTGAAATTACATTAGATAAAACTTATGTCATAGACTC
AACTCAATTACATTAAAAAAATTAATTTACATTATTCACGTTGATAACCATCTTCTAAAC
CAGTTGAGATACGACGAGAACTGTAACTCAATTTGCAATATATGCAAAGATGGGACAAAA
AAGGAACACTAGTTATCCCTTAGGAGACAACTCAATCCCAGCCGTTAAAATAATGATGAT
GATTCTACAGCCCAATAATCCAGCATCTTCTATCAAAACAGTAGCTTTATGCTTCATGTT
CACCATTTAAAATTTAGGAGAAGACTAATGTTAAATGATCTTTAGCTTATTTTTTTACTT
TCTGCAGAACTGAAAACACCCCAACTATGTTATTTATAGATTGTATAATTGTTTTTGAAT
AAAGAAATACAAGTGGAGTTTTCTGGTTGTTGAATTGACTAGGGAAGGGATTCTTGGTGA
ACCACAAATCAACAAAACCAATGATTCTGTTTATGTTGAGCTTTCATTTTCTTTGAAGTT
GATTTTTGTTGTTGAGGTTGTTGTTTTATGTTGTTTGACTTCAATTTAAGCAACCCCTTT
TCTTTCTTTCTCTTAAAGTTGTCTCTTTTTTTTGGGAAATTGTAACTGTAATGGACTTTG
TTTCTTCATCTGTGTTGCTCAAGAATTGCTTGGAAGTGAAGAATTTGAATTGATCTTGAA
TGGGTATGGCAAAAAGATTATATTTTTTGAGGTTTAAGAGGAAAAAGTATGGAGTTTTGC
TTAGAGTTCTTTTTAGTTTATGGTTCATCCTTGAAGGGATTTGCCCAGTAATGGGTGTCA
GGCCTCTCAGAGAAAGATACCGTTCGTGGGGAGATGAGTGGCTTCTGGTAAGAAAGGATG
AGAATGAATTGGGGCCTTTTTCTGCTTGGAATATAACAGGAACTTACAGAGGGTCTTGGA
GGTTCCTAGATTCAACAAATAGCTCTTCCAGGTTTCCTGATTTTAGGAAGTCCAATGGCA
ACTCGGTCCTTGAATTGATAAGTAATCCAACAAAAATAACTGGTGTACATTATATTCAGG
GTGCAATAATTTTCCATGATGTGTTTGACAATGAACATGGAGTTGGTGCTGCACAAATAA
GGGTAGAAGGTGTATATATATGGCCATTTAGACAACTTCGAATGGTAGCTTACAGTGGCA
AAGATGGTGAGTTTGGACAGGAAGACGATTATCTATTATCAAATCCATATCACTTGCTTG
GAGTTTTCTCGTCCCAGATATTCCAGGAGTCTTCTCGAGATAAGATTTGGAAAAAGAAAC
ACTCACCGTTTTACGAGATGGAGAAAAATTGTAATATAGAAATTGCTGCACAAATTGCTC
GTGTCTCATCCTCCTCAAATGATGCAGCTCGTGACCATTATCAACTAGAAGGATTGATAG
AGAGCCCTTCAGTGGATGCTGACGGGGACTGTTTCTCACCGATGCTTTTGAATGCTACTT
CTGTCAATATAGAGGTTTACTACAACAAAGCGGTGAACTACACATTGATGGTCACATTTA
TATCTTTTCTGCAAGTGCTCCTTCTGATTCGACAAATGGAACATAGCAACACCCAATCAG
GAGCTGCGAAAGTTTCAATTCTGATGATTGGACAACAGGCTATCATGGATGCTTATCTTT
GTCTTTTGCATCTGACCGCAGGGATACTTGTTGAATCCCTTTTCAATGCTTTTGCAACTG
CTGCATTCTTCAAGTTTGTTGTGTTCTCGATCTTTGAGATGAGATATCTACTTGCTATAT
GGAAGGCAAATAGGCCCATGAATAGCGTAGAGGGTTGGGAAGCAATGAGGCGTGAATTGT
CAGTACTTTACAGCCGTTTCTATGGGATCCTTTTAGGCGGACTGTTGTTCATGTATGAGT
TTCACAAGTTTCTGCGCCCTATTCTTCTACTTTTACACTCATTCTGGTTACCTCAAATTG
TAACTAATGTCATTCGTGACTCAAGAAAACCATTGCACCCTCATTACATCTTGGGAATGA
CTATTACGCGTTTGGCAATTCCATTATATGTCTTTGGCTGTCCTCACAATTTCATGCGTA
TAGAGCCTGATAAGAATTGGTGCATCTGCTTGGGAGTTTTTATTGTGCTGCAGGCATCAA
TTCTTCTGTTGCAGCATTACCTTGGATCTCGGTGGTTCATTCCACGTCAGATTTTACCTG
AGAAGTATAACTATTATAGAAGGTTTGATCAGGGTGCAAATCACGCCACTGACTGTGTTA
TTTGCATGACTGCTATTGATCATACTCAACGCTCAAATAATTGCATGGTGACACCTTGTG
ATCATTTCTTTCACTCTGGTTGTTTGCAAAGATGGATGGACATAAAGATGGAGTGTCCAA
CATGCCGACGTCCTCTTCCACCCGCTTGAATAAATGTTATTTCTTGAATTCATCTTGGTA
GAGCAACTGACATTGCCCGACCTGTTTAGAAAGCTTGCCATTGTCCGAGTAAAGACTACG
GGTTGGAGACAGAGAGAATTACATAAGAAGTTTTCTGTATAAAAGTTGAGCACAGATTCA
CTAGACTTGCTGTATATCTTGTTGATTAACTGTCTATTCTTTTCTTATATTTCACATAAA
AACAATAACATTATCAAATAATTCATAGAATTTATGGAATATTTCTTAATTTTTATGTGC
CATATTGGAGTATGACCATATTTCATT