Plant GARDEN
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TOP > About the Species(Solanum lycopersicum ) > genome data >Gene sequences

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SNP Detection
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Data List

All Markers Trait-Related Loci
Solanum lycopersicum

CDS Sequence

CDS ID

Solyc12g005310.2.1
CDS Infomation

Auxin-responsive GH3 family protein (AHRD V3.3 *** AT5G54510.1)
Sequence

ATGCCTGAGGCACCAAAGAATTCCCCTATTGTTGCTGAAGAAAACAAGAAAACTCTTCAT
TTCATTGAAGATGTTACCACCAAAGCTGATGAGATCCAAAAGAGAGTCCTTGCTGAAATA
CTTTGTCGAAATGCCAACGTTGAGTACTTGAAGCGCTATGCTGATCTTAATGGCAATACT
GATAGAGAGACTTTCAAAAAAGTTATGCCTGTTATCAGTTATGAAGATATTCAGCATGAT
ATCAACCGCATTGCGAGTGGTGATACATCTCCTATCTTGTGCTCCCAACCTGTCTCTGAA
TTCTTGACAAGTTCTGGTACGTCAGGAGGGGAGAGGAAATTGATGCCAACAACAGAGGAA
GAGCTTGGAAGACGATCGTTGCTTTATAGTCTTCTGATGCCTGTGATGAGTCATTTTGTC
CCAGATTTGGAGACGGGCAAAGGAATGTACTTTCTGTTTGTAAAATCTGAATCTAAGACC
CCGGGAGGCCTATTAGCTCGTCCTGTTTTAACAAGTTATTACAATAGCCCTCATTTTAAA
AACAGACGTCCTGACCCTTACACAAACTACACTAGCCCAAATGAAACTATTCTCTGCCCT
GATTCATACCAGAGCATGTATTCCCAAATGCTCTGTGGACTCAGCCAAAATGCACAAGTC
CTTCGTGTTGGCGCGGTTTTTGCCTCTGGCTTCATCCGCGCCATCCGCTTCTTAGAGAAG
CACTGGTCCCTTCTTTGTACTGATATTCGATCCGGTATCATGAATACTGAATTGATTACT
GATTCCTCAGTAAGAGAGGCTGTGATGAAAATACTTAAACCAGATCCCGATTTGGCTGAT
TTTATTGAGGCTGAATGTAGCAAGAAATCATGGCAAGGGATTATTACTAGGCTGTGGCCT
AATACTAAGTATGTTGATGTTATTGTGACTGGAACCATGTCGCAATATATACCAACTCTT
GATTATTATAGCAATGGACTACCTCTTGTTTGCACTATGTATGCTTCCTCTGAATGCTAT
TTTGGTGTCAATCTTAACCCCCTTTGCAAGCCTGAAGATGTCGCCTACACCCTTATACCG
ACTATGTGTTACTTTGAGTTCTTGCCAATTCATAGGAATAATGGTGTCATGGATTCTATC
GCCGCGCCCAAATCACTCAATGAGAATGAACAACAAACATTGGTGGATTTAGTTGATGTC
AAGATTGGTCAGGAGTATGAGCTTGTTGTCACCACATATGCTGGACTCTATCGATACAGG
GTTGGTGATGTGCTACGAGTTGCTGGATTCAAAAACAAGGCGCCTCAATTCAACTTCATT
TGCAGGAAAAACGTAGTTTTGAGCATTGATTCTGACAAGACTGATGAAGTTGAGCTACAA
AATGCCATGAAAAATGCAGTGAGCCACTTGATGCCATTTGATGCTCATGTCACAGAGTAC
ACTAGCTACGCGGACACAACCATAATTCCAGGCCACTACGTCTTATTCTGGGAAGTCAAC
GTGAATGGCTCAACCCCGGTCCACCCATCTGTCTTTGAAGACTGTTGTCTCACAATTGAA
GAGTCCTTAAACAGCGTCTATCGCCAAGGCCGTGCCTCTGACAAATCTATAGGCCCTCTT
GAAATCAGGATTGTGGAAGTTGGTACATTTGATAAGCTCATGGACTATGCCATAAGCTTA
GGTGCTTCAATAAATCAGTACAAGACACCGCGGTGTGTGAAATTTGCACCCATTATTGAA
CTACTGAATTCACGAGTCATGTCCAAATACTTTAGCCCTAAATGCCCAAAATGGACTCCT
GGACACAAGCAATGGAACAACATGAACTGA

Peptide Sequence

PEP ID

Solyc12g005310.2.1
PEP Infomation

Auxin-responsive GH3 family protein (AHRD V3.3 *** AT5G54510.1)
Sequence

MPEAPKNSPIVAEENKKTLHFIEDVTTKADEIQKRVLAEILCRNANVEYLKRYADLNGNT
DRETFKKVMPVISYEDIQHDINRIASGDTSPILCSQPVSEFLTSSGTSGGERKLMPTTEE
ELGRRSLLYSLLMPVMSHFVPDLETGKGMYFLFVKSESKTPGGLLARPVLTSYYNSPHFK
NRRPDPYTNYTSPNETILCPDSYQSMYSQMLCGLSQNAQVLRVGAVFASGFIRAIRFLEK
HWSLLCTDIRSGIMNTELITDSSVREAVMKILKPDPDLADFIEAECSKKSWQGIITRLWP
NTKYVDVIVTGTMSQYIPTLDYYSNGLPLVCTMYASSECYFGVNLNPLCKPEDVAYTLIP
TMCYFEFLPIHRNNGVMDSIAAPKSLNENEQQTLVDLVDVKIGQEYELVVTTYAGLYRYR
VGDVLRVAGFKNKAPQFNFICRKNVVLSIDSDKTDEVELQNAMKNAVSHLMPFDAHVTEY
TSYADTTIIPGHYVLFWEVNVNGSTPVHPSVFEDCCLTIEESLNSVYRQGRASDKSIGPL
EIRIVEVGTFDKLMDYAISLGASINQYKTPRCVKFAPIIELLNSRVMSKYFSPKCPKWTP
GHKQWNNMN*

Transcript Sequence

Transcript ID

Solyc12g005310.2.1
Transcript Infomation

Auxin-responsive GH3 family protein (AHRD V3.3 *** AT5G54510.1)
Sequence

TCATCAACCCCCACACCAGAAAATCAGTTTCCCTCTGATAACAACTCTTGGCTAAAGCCA
TCCTATACTCTTTTTCTCTTTAGTCATTACATTATTAACAATGCCTGAGGCACCAAAGAA
TTCCCCTATTGTTGCTGAAGAAAACAAGAAAACTCTTCATTTCATTGAAGATGTTACCAC
CAAAGCTGATGAGATCCAAAAGAGAGTCCTTGCTGAAATACTTTGTCGAAATGCCAACGT
TGAGTACTTGAAGCGCTATGCTGATCTTAATGGCAATACTGATAGAGAGACTTTCAAAAA
AGTTATGCCTGTTATCAGTTATGAAGATATTCAGCATGATATCAACCGCATTGCGAGTGG
TGATACATCTCCTATCTTGTGCTCCCAACCTGTCTCTGAATTCTTGACAAGTTCTGGTAC
GTCAGGAGGGGAGAGGAAATTGATGCCAACAACAGAGGAAGAGCTTGGAAGACGATCGTT
GCTTTATAGTCTTCTGATGCCTGTGATGAGTCATTTTGTCCCAGATTTGGAGACGGGCAA
AGGAATGTACTTTCTGTTTGTAAAATCTGAATCTAAGACCCCGGGAGGCCTATTAGCTCG
TCCTGTTTTAACAAGTTATTACAATAGCCCTCATTTTAAAAACAGACGTCCTGACCCTTA
CACAAACTACACTAGCCCAAATGAAACTATTCTCTGCCCTGATTCATACCAGAGCATGTA
TTCCCAAATGCTCTGTGGACTCAGCCAAAATGCACAAGTCCTTCGTGTTGGCGCGGTTTT
TGCCTCTGGCTTCATCCGCGCCATCCGCTTCTTAGAGAAGCACTGGTCCCTTCTTTGTAC
TGATATTCGATCCGGTATCATGAATACTGAATTGATTACTGATTCCTCAGTAAGAGAGGC
TGTGATGAAAATACTTAAACCAGATCCCGATTTGGCTGATTTTATTGAGGCTGAATGTAG
CAAGAAATCATGGCAAGGGATTATTACTAGGCTGTGGCCTAATACTAAGTATGTTGATGT
TATTGTGACTGGAACCATGTCGCAATATATACCAACTCTTGATTATTATAGCAATGGACT
ACCTCTTGTTTGCACTATGTATGCTTCCTCTGAATGCTATTTTGGTGTCAATCTTAACCC
CCTTTGCAAGCCTGAAGATGTCGCCTACACCCTTATACCGACTATGTGTTACTTTGAGTT
CTTGCCAATTCATAGGAATAATGGTGTCATGGATTCTATCGCCGCGCCCAAATCACTCAA
TGAGAATGAACAACAAACATTGGTGGATTTAGTTGATGTCAAGATTGGTCAGGAGTATGA
GCTTGTTGTCACCACATATGCTGGACTCTATCGATACAGGGTTGGTGATGTGCTACGAGT
TGCTGGATTCAAAAACAAGGCGCCTCAATTCAACTTCATTTGCAGGAAAAACGTAGTTTT
GAGCATTGATTCTGACAAGACTGATGAAGTTGAGCTACAAAATGCCATGAAAAATGCAGT
GAGCCACTTGATGCCATTTGATGCTCATGTCACAGAGTACACTAGCTACGCGGACACAAC
CATAATTCCAGGCCACTACGTCTTATTCTGGGAAGTCAACGTGAATGGCTCAACCCCGGT
CCACCCATCTGTCTTTGAAGACTGTTGTCTCACAATTGAAGAGTCCTTAAACAGCGTCTA
TCGCCAAGGCCGTGCCTCTGACAAATCTATAGGCCCTCTTGAAATCAGGATTGTGGAAGT
TGGTACATTTGATAAGCTCATGGACTATGCCATAAGCTTAGGTGCTTCAATAAATCAGTA
CAAGACACCGCGGTGTGTGAAATTTGCACCCATTATTGAACTACTGAATTCACGAGTCAT
GTCCAAATACTTTAGCCCTAAATGCCCAAAATGGACTCCTGGACACAAGCAATGGAACAA
CATGAACTGACTGGCTAGCTAATTTCTCTGCTGACAGCTTCATCATAAGTCCAAGAAAGA
ACAAAATTAAAGTGAACATGTATCATTTGGGATCAATTTTAGTATTAGTCATTATATTAA
TTAAGAAAACATCCTACCTAGGCTAATTTTGTTCACTTCCCTCAAAACCACCACAAATTT
TGTGTGTGTGTTGTTACTTTTCCTTAATTAAAATCTCTTCTTGGAATTTTCATCTCTTTT
CGTAAAAATTCTATCCCTACTTTAAAGAATTGCAAATTGCAAATGGATTACATTTAATGG
GAATAGTTTTCTTATTTCCAGAAGAAAAATGTTGTCCACTGAACTATCTATCTTGAACCA
ACTACAAGTAATAGTTGTTGGTTGGGCCGGAGCTACATAGAGCCAAGATGATACATTGTT
TATATATATGTTG