Gene sequences

How To ▶︎

JA

EN

TOP > About the Species(Solanum lycopersicum ) > genome data >Gene sequences

Search

By Traits

Let’s Analyze!!

SNP Detection
(lang=JA only)

Other Tools

Data List

All

Trait-Related Loci

Solanum lycopersicum

CDS Sequence

CDS ID	Solyc11g072710.2.1
CDS Infomation	phototropin 1
Sequence	ATGGAAGAAGAAAACAAGCAATCTCCTCTTATACCACCATTGCCAAGAGATCCAAGAGGT TCTCTAGAAGTTTTCAATCCTTCAACCTACTCTTCCCGATCAACAAATCCTGTTTTCCGA TCACAACCTTCATGGAAAAATTGGACCGCCGCTGATCCCATTACCAGTAGTACTATCCCT GAAACAGAGGAAAAAACAGAGCAAATCGCAATTCCCAAATCGAGTAACGAAAATGAACAA ATCGCTACTTCATGGATGGCAATTGCTCCGGCTTCAACGAAATTGGCTTCTCCGATTACT CAAAAATCAATTACCGGTGGTGAGAAGGTTAATTCGAAGGCGGCAGTGGATGAAGTTGGT GCTGCTGCTCAGAGAGCAGCCGAGTGGGGACTTGTGTTGAAAACTGATGATGAGACTGGG AAATTGCAAGGAGTTAAAGTTAGAACTTCTGGAGATGATACGAATGGTAAAACAGAAACT TCTCGAAGAGATTCCGGCAACTCTGGTCGGAGTTCCGGCGAATTTTCTGATGATGGAGCT GGCAAAGAGAGGGGAATTCCAAGAGTTTCAGAGGATTTAAGAGATGCCTTATCTACATTT CAACAAACATTTGTGGTGTCGGATGCAACCAAACCCGATTACCCGATTCTGTATGCAAGT GCTGGATTTTTCAAGATGACGGGTTATACATCAAAGGAGGTTATAGGAAGGAACTGTCGG TTCATGCAGGGTTCGGGTACGGATCCTGAGGATGTGGCTACGATCCGAGAAGCATTGCAA TCGGGTTCAACTTACTGTGGAAGATTACTAAATTATAAGAAGGATGGGACCCCTTTTTGG AATCTTCTCACTATTGCACCTATTAAAGATGATGCTGGCAAAGTACTCAAATTCATTGGA ATGCAAGTTGAGGTAAGCAAGCACACAGAAGGCTCCAAGGAAAAAACTGTCCGACCCAAC GGCCTTCCTGAATCATTGATACGCTATGACGTGCGTCAGAAGGAGATGGCTAGTAATTCA GTGAATGAGTTATTAGAAGAAATAAAAAATCCAAGAAGGGCAAGAGCACTTAGTGAATCA ACAAATAATAGACCAACTTTCATGAGAAAGTCAGAAGGAGATCAAGTTGAACAAGATAAA CAGGATACTCATAAGCTAAATTTAGTGAACAAAGCACCAGCAAGAAGACATTCACATGCT GGTACTAGAACCACCACCATGAAGATGGAGAAGATTAACGAAGTCCCCGAAAAGAAACCT AAAAAATCTGCTCGTCTATCTTTCATGGGGATTATGAAGAAAAAACGTTCTAGTACTACA ATGACTACTGATGATGATGATTTTGAGGCAAGGATGACAATGGATAATGACGATGACGAT GATGATGAGAGTGACAACGATGGACGACCAGTTAGTGTTGATGACAAAGTGAGGAAGAAG GAAATGAGAAAAGGTATTGATTTAGCAACGACGCTTGAACGTATCGAGAAGAACTTTGTC ATTACTGATCCAAGACTGCCTGATAATCCTATTATTTTTGCATCGGATAGTTTCTTGGAG CTGACAGAGTACAGCCGTGAAGAAATCTTGGGAAGAAACTGCAGGTTTCTTCAAGGTCCT GAAACTGATCCAGCTACTGTGAAGAAAATCAGACAGGCAATTGATAATCAAACTGATGTC ACTGTTCAGCTTATTAACTACACTAAGACTGGCAAAAAGTTCTGGAACTTGTTCCACCTT CAGCCTATGCGTGATCAGAAGGGAGAGGTGCAGTACTTCATCGGAGTGCAACTAGATGGA AGTCAGCATGTAGAGCCACTTCAAAACAGTATCCCTGAAGACAAAGCAACAGAGAGTGCA AAGCTGATAAAAGAAACTGCTGGAAATGTTGATGAAGCAGTTCGAGAGCTTCCAGATGCC AATTCAAAACCAGAGGATTTGTGGAGAAATCATTCAAAAGTTGTTCAGCCAAAGCCTCAC AGGAAGGACAGCCCATCTTGGAAAGCAATACAAAAGATCTTGGAGAGTGGAGAACCGATA GGCTTGAAACATTTCAAGCCAATTAAACCACTGGGATCGGGCGACACTGGCAGTGTGCAT TTAGTGGAGCTTTGCGGAACAGACCAGCACTTTGCAATGAAAGCAATGGATAAGAGTATA ATGCTTAACCGAAACAAGGTGCATAGAGCTTGTGCAGAACGAGAAATCCTAGATATGTTG GACCACCCTTTTCTTCCCGCACTTTATGCATCTTTTCAGACCAAAACCCATATCTGTCTA ATAACTGATTACTACCCTGGTGGAGAGCTGTTCATGCTTCTAGATAGACAACAAACAAAG GTGTTGAAGGAAGATGCTGCACGGTTCTATGCCGCTGAAGTTGTAGTCGCCTTGGAGTAC CTTCACTGTCAAGGTATAATTTATAGGGATCTGAAGCCTGAAAACGTCTTGCTTCAGAGT GGTGGGCATGTATCTTTGACGGATTTTGATCTTTCCTGTTTGACATCTTGCAAGCCACAG CTTTTAGTTCCAGAAATCAACGAAAAGAAGAAACATCAAAAAGGCCAACATAATCCAATC TTCATGGCTGAACCTATGCGTGCATCAAATTCTTTTGTTGGAACTGAAGAATACATAGCT CCGGAGATCATAACTGGAGCAGGGCATACTAGTGCAGTGGATTGGTGGGCTCTTGGCATT CTTTTGTATGAAATGTTGTATGGTTATACACCATTCAGGGGAAAGACAAGGCAGAAGACA TTCTCAAATATACTACATAAGGATTTAAAATTCCCAGGAAGCATACAGTCTAGTCTCCAC GCGAAGCAGTTAATGTATAGATTGTTGCACAGAGATCCCAAAAACAGGTTAGGATCTCGT GAAGGAGCAAACGAAATCAAGCAGCATCCGTTCTTCCGCGGTGTGAATTGGGCATTAATT CGTTGCATGAACCCTCCCAAACTAGATTCTGCTCCTTTTTTGGGAACTGAATCTGAGAAA GAAGGAAAAGACATCAATCCTGAGATGGAGGATTTACAAACAAATGTTTTCTAA

Peptide Sequence

PEP ID	Solyc11g072710.2.1
PEP Infomation	phototropin 1
Sequence	MEEENKQSPLIPPLPRDPRGSLEVFNPSTYSSRSTNPVFRSQPSWKNWTAADPITSSTIP ETEEKTEQIAIPKSSNENEQIATSWMAIAPASTKLASPITQKSITGGEKVNSKAAVDEVG AAAQRAAEWGLVLKTDDETGKLQGVKVRTSGDDTNGKTETSRRDSGNSGRSSGEFSDDGA GKERGIPRVSEDLRDALSTFQQTFVVSDATKPDYPILYASAGFFKMTGYTSKEVIGRNCR FMQGSGTDPEDVATIREALQSGSTYCGRLLNYKKDGTPFWNLLTIAPIKDDAGKVLKFIG MQVEVSKHTEGSKEKTVRPNGLPESLIRYDVRQKEMASNSVNELLEEIKNPRRARALSES TNNRPTFMRKSEGDQVEQDKQDTHKLNLVNKAPARRHSHAGTRTTTMKMEKINEVPEKKP KKSARLSFMGIMKKKRSSTTMTTDDDDFEARMTMDNDDDDDDESDNDGRPVSVDDKVRKK EMRKGIDLATTLERIEKNFVITDPRLPDNPIIFASDSFLELTEYSREEILGRNCRFLQGP ETDPATVKKIRQAIDNQTDVTVQLINYTKTGKKFWNLFHLQPMRDQKGEVQYFIGVQLDG SQHVEPLQNSIPEDKATESAKLIKETAGNVDEAVRELPDANSKPEDLWRNHSKVVQPKPH RKDSPSWKAIQKILESGEPIGLKHFKPIKPLGSGDTGSVHLVELCGTDQHFAMKAMDKSI MLNRNKVHRACAEREILDMLDHPFLPALYASFQTKTHICLITDYYPGGELFMLLDRQQTK VLKEDAARFYAAEVVVALEYLHCQGIIYRDLKPENVLLQSGGHVSLTDFDLSCLTSCKPQ LLVPEINEKKKHQKGQHNPIFMAEPMRASNSFVGTEEYIAPEIITGAGHTSAVDWWALGI LLYEMLYGYTPFRGKTRQKTFSNILHKDLKFPGSIQSSLHAKQLMYRLLHRDPKNRLGSR EGANEIKQHPFFRGVNWALIRCMNPPKLDSAPFLGTESEKEGKDINPEMEDLQTNVF*

Transcript Sequence

Transcript ID	Solyc11g072710.2.1
Transcript Infomation	phototropin 1
Sequence	CAAAAAATAAAGAGAGTTTTAATATCCCCCAGTAGGATAACTATCTGAATTTTTATTTTA TTTTAAAAAATTTCAATTTTTCACTTTGTAATCATTTTACATCGAATATAAATTTCCGTA TTCTTTATATTTATATTTCTTATTGAACGTTTCGTCCAATCAAATATCGTCGTGTAACAG TAAAAATGAAATGATTTGTGTAACTGGAGATAAAACAGAGTGTGAGCAGAGACACATATA TATAGTGCTTTGATACAGACATGAGAACTGTTTGTGTACGCAGAAATAATGGAAGAAGAA AACAAGCAATCTCCTCTTATACCACCATTGCCAAGAGATCCAAGAGGTTCTCTAGAAGTT TTCAATCCTTCAACCTACTCTTCCCGATCAACAAATCCTGTTTTCCGATCACAACCTTCA TGGAAAAATTGGACCGCCGCTGATCCCATTACCAGTAGTACTATCCCTGAAACAGAGGAA AAAACAGAGCAAATCGCAATTCCCAAATCGAGTAACGAAAATGAACAAATCGCTACTTCA TGGATGGCAATTGCTCCGGCTTCAACGAAATTGGCTTCTCCGATTACTCAAAAATCAATT ACCGGTGGTGAGAAGGTTAATTCGAAGGCGGCAGTGGATGAAGTTGGTGCTGCTGCTCAG AGAGCAGCCGAGTGGGGACTTGTGTTGAAAACTGATGATGAGACTGGGAAATTGCAAGGA GTTAAAGTTAGAACTTCTGGAGATGATACGAATGGTAAAACAGAAACTTCTCGAAGAGAT TCCGGCAACTCTGGTCGGAGTTCCGGCGAATTTTCTGATGATGGAGCTGGCAAAGAGAGG GGAATTCCAAGAGTTTCAGAGGATTTAAGAGATGCCTTATCTACATTTCAACAAACATTT GTGGTGTCGGATGCAACCAAACCCGATTACCCGATTCTGTATGCAAGTGCTGGATTTTTC AAGATGACGGGTTATACATCAAAGGAGGTTATAGGAAGGAACTGTCGGTTCATGCAGGGT TCGGGTACGGATCCTGAGGATGTGGCTACGATCCGAGAAGCATTGCAATCGGGTTCAACT TACTGTGGAAGATTACTAAATTATAAGAAGGATGGGACCCCTTTTTGGAATCTTCTCACT ATTGCACCTATTAAAGATGATGCTGGCAAAGTACTCAAATTCATTGGAATGCAAGTTGAG GTAAGCAAGCACACAGAAGGCTCCAAGGAAAAAACTGTCCGACCCAACGGCCTTCCTGAA TCATTGATACGCTATGACGTGCGTCAGAAGGAGATGGCTAGTAATTCAGTGAATGAGTTA TTAGAAGAAATAAAAAATCCAAGAAGGGCAAGAGCACTTAGTGAATCAACAAATAATAGA CCAACTTTCATGAGAAAGTCAGAAGGAGATCAAGTTGAACAAGATAAACAGGATACTCAT AAGCTAAATTTAGTGAACAAAGCACCAGCAAGAAGACATTCACATGCTGGTACTAGAACC ACCACCATGAAGATGGAGAAGATTAACGAAGTCCCCGAAAAGAAACCTAAAAAATCTGCT CGTCTATCTTTCATGGGGATTATGAAGAAAAAACGTTCTAGTACTACAATGACTACTGAT GATGATGATTTTGAGGCAAGGATGACAATGGATAATGACGATGACGATGATGATGAGAGT GACAACGATGGACGACCAGTTAGTGTTGATGACAAAGTGAGGAAGAAGGAAATGAGAAAA GGTATTGATTTAGCAACGACGCTTGAACGTATCGAGAAGAACTTTGTCATTACTGATCCA AGACTGCCTGATAATCCTATTATTTTTGCATCGGATAGTTTCTTGGAGCTGACAGAGTAC AGCCGTGAAGAAATCTTGGGAAGAAACTGCAGGTTTCTTCAAGGTCCTGAAACTGATCCA GCTACTGTGAAGAAAATCAGACAGGCAATTGATAATCAAACTGATGTCACTGTTCAGCTT ATTAACTACACTAAGACTGGCAAAAAGTTCTGGAACTTGTTCCACCTTCAGCCTATGCGT GATCAGAAGGGAGAGGTGCAGTACTTCATCGGAGTGCAACTAGATGGAAGTCAGCATGTA GAGCCACTTCAAAACAGTATCCCTGAAGACAAAGCAACAGAGAGTGCAAAGCTGATAAAA GAAACTGCTGGAAATGTTGATGAAGCAGTTCGAGAGCTTCCAGATGCCAATTCAAAACCA GAGGATTTGTGGAGAAATCATTCAAAAGTTGTTCAGCCAAAGCCTCACAGGAAGGACAGC CCATCTTGGAAAGCAATACAAAAGATCTTGGAGAGTGGAGAACCGATAGGCTTGAAACAT TTCAAGCCAATTAAACCACTGGGATCGGGCGACACTGGCAGTGTGCATTTAGTGGAGCTT TGCGGAACAGACCAGCACTTTGCAATGAAAGCAATGGATAAGAGTATAATGCTTAACCGA AACAAGGTGCATAGAGCTTGTGCAGAACGAGAAATCCTAGATATGTTGGACCACCCTTTT CTTCCCGCACTTTATGCATCTTTTCAGACCAAAACCCATATCTGTCTAATAACTGATTAC TACCCTGGTGGAGAGCTGTTCATGCTTCTAGATAGACAACAAACAAAGGTGTTGAAGGAA GATGCTGCACGGTTCTATGCCGCTGAAGTTGTAGTCGCCTTGGAGTACCTTCACTGTCAA GGTATAATTTATAGGGATCTGAAGCCTGAAAACGTCTTGCTTCAGAGTGGTGGGCATGTA TCTTTGACGGATTTTGATCTTTCCTGTTTGACATCTTGCAAGCCACAGCTTTTAGTTCCA GAAATCAACGAAAAGAAGAAACATCAAAAAGGCCAACATAATCCAATCTTCATGGCTGAA CCTATGCGTGCATCAAATTCTTTTGTTGGAACTGAAGAATACATAGCTCCGGAGATCATA ACTGGAGCAGGGCATACTAGTGCAGTGGATTGGTGGGCTCTTGGCATTCTTTTGTATGAA ATGTTGTATGGTTATACACCATTCAGGGGAAAGACAAGGCAGAAGACATTCTCAAATATA CTACATAAGGATTTAAAATTCCCAGGAAGCATACAGTCTAGTCTCCACGCGAAGCAGTTA ATGTATAGATTGTTGCACAGAGATCCCAAAAACAGGTTAGGATCTCGTGAAGGAGCAAAC GAAATCAAGCAGCATCCGTTCTTCCGCGGTGTGAATTGGGCATTAATTCGTTGCATGAAC CCTCCCAAACTAGATTCTGCTCCTTTTTTGGGAACTGAATCTGAGAAAGAAGGAAAAGAC ATCAATCCTGAGATGGAGGATTTACAAACAAATGTTTTCTAAAAGTTTGTTGCAGAGATG AAATATTTATATCCCAATCAAATCAAGTGCATGAGTGAAGATAAAGTGATCTTCAGAACC TCCCTGCAACAGTTAATCACTTGATGATTTTGTAAAAAATAAAATGGTGGTTTTTCATTT GTTTTTTTTTTCCTTTGATGGTTTGTGTTTTTCTTTTTATATGCATAGTTTGGTTGTTTT GTAATTCTTAATTCATGAATTCCTCAGTAGATATTGAGTTAATTAATTTGTTAAGCCTAA TTTTCTTCATTTAA