Plant GARDEN
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TOP > About the Species(Solanum lycopersicum ) > genome data >Gene sequences

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SNP Detection
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Data List

All Markers Trait-Related Loci
Solanum lycopersicum

CDS Sequence

CDS ID

Solyc11g071370.1.1
CDS Infomation

Pentatricopeptide repeat-containing family protein (AHRD V3.3 *** B9GHN6_POPTR)
Sequence

ATGGCCCTTCCCGCCATTAATGTCACTGCCGCCGCCACTCCGCCGCTGCTGTCGCCGCCG
CTGCAACTACTCCAGCTCCATAATAAAAACACCGCCTCTGCCGCCACCTACCGCAGCAAT
AATGACTCTACAGCTTCATGGACCTCGTTAATTGCCCGTCACTGCAAAAACGGCCGTTTA
ATCGAGGCGGTTGCCGAGTTCACTCGCATGAGGAATTCCGGCGTTGAGCCTAACCACATT
ACCTTCGTTACTCTTCTCTCGTGCTGTGCCCATTTTCCTGATCAAGCTCTGTCTTTTGGC
TCTGCTCTTCACGGGTATGCTCGAAAACTCGGGTTGGATACTCAGAATGTGAAGGTGGGT
ACTGCTGTTATCGACATGTATTCGAAGTTTGGACTTGTGGGGCTTGCGAGATTGAGTTTT
GATCATATGGGTGCTAAGAATAAGGTGACTTGGAACACGATGGTTGATGGTTACATGAGA
AATGGGGATTTCAAGAACGCGGTTAAGGTGTTCGATGAAATTCCTGACAGAGATGTTATT
TCCTGGACGGCTTTGGTTGGTGGATTTGTCAAGAATGGCCTTTTTGAAGAAGGTTTAGTA
TGGTTTCGAGAAATGCAGTTATCTGGTGTGGAGCCTGATTATGTAACGATGATCTCTGTT
CTTTCGGCTTGTGCTAATTTGGGGACTCTTGGTATAAGCCTATGGTTACACCGGTTTATC
CTACGACGTGAATTTAAGGATAATGTTCGTGTTAATAACTCGTTGATCGACATGTATTGT
AGGTGTGGATGTGTAGAATTGGCGTGTCAGGTGTTTCATAGAATGACTGGGAGAAGCTTG
GTTTCGTGGAATTCAATCATTGTTGGATTAGCAGTCAATGGGCACGCGATAGATGCACTG
CAATATTTCGATTTGATGCAAAATGAAGGTTTTCAACCGGATGGGGTGACCTTTACAGGA
GTTCTCACGGCATGTAGCCATGCTGGTTTAGTCGAAAAAGGGCTGAAGTATTTCAAAGCA
ATGAAGAGAGTTCATAGGATTACTCCTAGGATTGAACACTACGGCTGTATAGTCGACCTT
TACAGTCGTGCTGGAAGATTAGAAGATGCATTAGGCATTATTAAGAAAATGCCCGTGAAG
CCAAATGAAGTTATATTGGGGTCTATATTAGCAGCTTGTCGAAATCATAGCGATGTAAGA
TTAGCTGAAAGGCTAATGCATTATATCTACGAACTGGATCCAGATGGAGATTCAAATCAT
GTGCTGCTTTCTAATATATATGCTGCAGTGGGAAGTTGGCGTGGAGCTAGTACCGTGAGG
AAGAAAATGAAGGCGCTCGGGATTCAAAAGAGACCGGGAACTAGTTCCATTGAGATTGAT
GGTGTCCTTAATGAATTTGTGGCCGGAGATAGATCACATTTACATGCGGAGCAGGTTTAC
GCAATGCTTGAGCATTTGTCAGGTGAGTTAAAAGTGTCTGGATATGTTGAAGATGATTTT
AGTCAATTATATGAATGTGGTTGA

Peptide Sequence

PEP ID

Solyc11g071370.1.1
PEP Infomation

Pentatricopeptide repeat-containing family protein (AHRD V3.3 *** B9GHN6_POPTR)
Sequence

MALPAINVTAAATPPLLSPPLQLLQLHNKNTASAATYRSNNDSTASWTSLIARHCKNGRL
IEAVAEFTRMRNSGVEPNHITFVTLLSCCAHFPDQALSFGSALHGYARKLGLDTQNVKVG
TAVIDMYSKFGLVGLARLSFDHMGAKNKVTWNTMVDGYMRNGDFKNAVKVFDEIPDRDVI
SWTALVGGFVKNGLFEEGLVWFREMQLSGVEPDYVTMISVLSACANLGTLGISLWLHRFI
LRREFKDNVRVNNSLIDMYCRCGCVELACQVFHRMTGRSLVSWNSIIVGLAVNGHAIDAL
QYFDLMQNEGFQPDGVTFTGVLTACSHAGLVEKGLKYFKAMKRVHRITPRIEHYGCIVDL
YSRAGRLEDALGIIKKMPVKPNEVILGSILAACRNHSDVRLAERLMHYIYELDPDGDSNH
VLLSNIYAAVGSWRGASTVRKKMKALGIQKRPGTSSIEIDGVLNEFVAGDRSHLHAEQVY
AMLEHLSGELKVSGYVEDDFSQLYECG*

Transcript Sequence

Transcript ID

Solyc11g071370.1.1
Transcript Infomation

Pentatricopeptide repeat-containing family protein (AHRD V3.3 *** B9GHN6_POPTR)
Sequence

ATGGCCCTTCCCGCCATTAATGTCACTGCCGCCGCCACTCCGCCGCTGCTGTCGCCGCCG
CTGCAACTACTCCAGCTCCATAATAAAAACACCGCCTCTGCCGCCACCTACCGCAGCAAT
AATGACTCTACAGCTTCATGGACCTCGTTAATTGCCCGTCACTGCAAAAACGGCCGTTTA
ATCGAGGCGGTTGCCGAGTTCACTCGCATGAGGAATTCCGGCGTTGAGCCTAACCACATT
ACCTTCGTTACTCTTCTCTCGTGCTGTGCCCATTTTCCTGATCAAGCTCTGTCTTTTGGC
TCTGCTCTTCACGGGTATGCTCGAAAACTCGGGTTGGATACTCAGAATGTGAAGGTGGGT
ACTGCTGTTATCGACATGTATTCGAAGTTTGGACTTGTGGGGCTTGCGAGATTGAGTTTT
GATCATATGGGTGCTAAGAATAAGGTGACTTGGAACACGATGGTTGATGGTTACATGAGA
AATGGGGATTTCAAGAACGCGGTTAAGGTGTTCGATGAAATTCCTGACAGAGATGTTATT
TCCTGGACGGCTTTGGTTGGTGGATTTGTCAAGAATGGCCTTTTTGAAGAAGGTTTAGTA
TGGTTTCGAGAAATGCAGTTATCTGGTGTGGAGCCTGATTATGTAACGATGATCTCTGTT
CTTTCGGCTTGTGCTAATTTGGGGACTCTTGGTATAAGCCTATGGTTACACCGGTTTATC
CTACGACGTGAATTTAAGGATAATGTTCGTGTTAATAACTCGTTGATCGACATGTATTGT
AGGTGTGGATGTGTAGAATTGGCGTGTCAGGTGTTTCATAGAATGACTGGGAGAAGCTTG
GTTTCGTGGAATTCAATCATTGTTGGATTAGCAGTCAATGGGCACGCGATAGATGCACTG
CAATATTTCGATTTGATGCAAAATGAAGGTTTTCAACCGGATGGGGTGACCTTTACAGGA
GTTCTCACGGCATGTAGCCATGCTGGTTTAGTCGAAAAAGGGCTGAAGTATTTCAAAGCA
ATGAAGAGAGTTCATAGGATTACTCCTAGGATTGAACACTACGGCTGTATAGTCGACCTT
TACAGTCGTGCTGGAAGATTAGAAGATGCATTAGGCATTATTAAGAAAATGCCCGTGAAG
CCAAATGAAGTTATATTGGGGTCTATATTAGCAGCTTGTCGAAATCATAGCGATGTAAGA
TTAGCTGAAAGGCTAATGCATTATATCTACGAACTGGATCCAGATGGAGATTCAAATCAT
GTGCTGCTTTCTAATATATATGCTGCAGTGGGAAGTTGGCGTGGAGCTAGTACCGTGAGG
AAGAAAATGAAGGCGCTCGGGATTCAAAAGAGACCGGGAACTAGTTCCATTGAGATTGAT
GGTGTCCTTAATGAATTTGTGGCCGGAGATAGATCACATTTACATGCGGAGCAGGTTTAC
GCAATGCTTGAGCATTTGTCAGGTGAGTTAAAAGTGTCTGGATATGTTGAAGATGATTTT
AGTCAATTATATGAATGTGGTTGA