Plant GARDEN
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TOP > About the Species(Solanum lycopersicum ) > genome data >Gene sequences

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SNP Detection
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Data List

All Markers Trait-Related Loci
Solanum lycopersicum

CDS Sequence

CDS ID

Solyc11g069350.2.1
CDS Infomation

RING/U-box superfamily protein (AHRD V3.3 *** AT5G60580.3)
Sequence

ATGAGTGAAGAACATAAGGAGAAAATCATGGCTGAGGTTGTTGATAATGATGAAAAAATT
GGTGTTTGTGAAAATGATTTTGTCATTTCAACACCTAAGATCGAGAGGTCATCCACGATT
ACTGAAGAAACAACACATGCTAAACATTGGAGGAAACCAAACCTATCCTTAGACATACCT
TCAAGAACGTTAGACGCGTCTCCTCAAGAGTTAGTTCAGATTAAAAGACCATTCACGCCT
ACACCGAAGAGGGTGAATTTCCTTTTGACACCCAGTACTTGTGATTCAAGAATAACTACT
TCATCACCAGGTCCCTCCCCGTGTCGTGGAAAATCAACCATTAGAAATCTTTTCCCTAAA
CTGAGCTTGAAATCACGTATGAATTCGGATACAGAGAAGGTAACTGTCCCGGATACAGGT
CCAGCTGCTGCAGTTGTGCCACAACAAGAGAAGGTATCCATTTCAAGGTCATGGTCACTT
ACTAAAATGTTCACGCCTCGCATCAAGAGGACCTCGTCTTTGCCCGTTACACCAATTTCA
CATTCAAATCCTGAGTCTATTAGTGGAAGCATCAACAACTCTCTAACACTTGGTACGAAG
GAAACACATGTGTGCATATCACGATCGATGTCTTTACCAGTTATTAACAAAGAAAAAGAG
GGAAGCAATAGGAGAGTAGAATTTTTCTTTCGAGTTATTCCTTCAACGCCTCAAGTGAAG
GATGTGGATTCTTCCTCAGTTCCAGCTACGAGTCCTACGAAAGTACCTGAGGATAATGAG
CAGGGTGGTGAAGATATACCAGAAGAGGAAGCTGTTTGTCGAATTTGCCTAGTTGAGCTG
TGTGAAGGCGGAGAGACGCTGAAGATGGAATGCAGCTGCAAAGGCGAACTCGCTTTGGCT
CATCAAGAATGTGCTTTAAAATGGTTTAGTATCAAAGGTAACAAGACATGTGATGTGTGC
AGACAAGAAGTCAAGAATCTCCCCGTTACACTCTTGCGTATGCAAAGTGTTCGAAATGTA
AATGCAGGATCCAATAGGTTCCGACATATGGAGTTAAACGGACACAGGGTTTGGCAGGAA
CTACCAATTCTTGTTATTGTCAGCATGCTTGCCTACTTTTGCTTTCTTGAGCAGCTACTG
GTTGGGAAAATGGGTACCGGTGCAATTGCTATTTCACTTCCCTTTTCTTGTGTACTAGGC
CTACTCGCGTCAATGACATCTTCAACTATGGTTAAGCGAAGGTTTGTTTGGGTATATGCA
TCGGTCCAATTCGCCCTAGTAGTACTATTTGCACATATCTTCTACTCTTTGGTTCGCGTT
CAACCAGTTCTTTCGATTCTGCTATCAACATTTGCTGGCTTTGGAGTTGCAATGAGTGCA
AGTTCGTTACTCGTTGAGTTCTTTAGATGGAAAAGGCGACGAGCAGCCTTGTTAGAACAG
CAGCAGAATGCAGATATGGTTTTGCCTCCAGGAGGATGGCCACAGATGAATCAACCTGCT
ACAACGTCTCGTATAGGTCCTCAAAATCATCAACACGATATAGAAAATCCTGAGACGTTT
AGTTGGAGCTAG

Peptide Sequence

PEP ID

Solyc11g069350.2.1
PEP Infomation

RING/U-box superfamily protein (AHRD V3.3 *** AT5G60580.3)
Sequence

MSEEHKEKIMAEVVDNDEKIGVCENDFVISTPKIERSSTITEETTHAKHWRKPNLSLDIP
SRTLDASPQELVQIKRPFTPTPKRVNFLLTPSTCDSRITTSSPGPSPCRGKSTIRNLFPK
LSLKSRMNSDTEKVTVPDTGPAAAVVPQQEKVSISRSWSLTKMFTPRIKRTSSLPVTPIS
HSNPESISGSINNSLTLGTKETHVCISRSMSLPVINKEKEGSNRRVEFFFRVIPSTPQVK
DVDSSSVPATSPTKVPEDNEQGGEDIPEEEAVCRICLVELCEGGETLKMECSCKGELALA
HQECALKWFSIKGNKTCDVCRQEVKNLPVTLLRMQSVRNVNAGSNRFRHMELNGHRVWQE
LPILVIVSMLAYFCFLEQLLVGKMGTGAIAISLPFSCVLGLLASMTSSTMVKRRFVWVYA
SVQFALVVLFAHIFYSLVRVQPVLSILLSTFAGFGVAMSASSLLVEFFRWKRRRAALLEQ
QQNADMVLPPGGWPQMNQPATTSRIGPQNHQHDIENPETFSWS*

Transcript Sequence

Transcript ID

Solyc11g069350.2.1
Transcript Infomation

RING/U-box superfamily protein (AHRD V3.3 *** AT5G60580.3)
Sequence

GCCAATTCATAAATAATTTTATTATACAAAGTAACAAACATTCTGGTTCTCTATTTTTTT
TTTTAAAAAAAAACTCCCATTGCACCTTTTTTTTTTAAAAAAAATCTTTTGTTATTTTCA
CTCTTTTCAAGATTTTTTCAAATTTTAAGTAAACAAAGTGTATTATTAGTAGATTGTGGA
ATATTTGGATCATGAGTGAAGAACATAAGGAGAAAATCATGGCTGAGGTTGTTGATAATG
ATGAAAAAATTGGTGTTTGTGAAAATGATTTTGTCATTTCAACACCTAAGATCGAGAGGT
CATCCACGATTACTGAAGAAACAACACATGCTAAACATTGGAGGAAACCAAACCTATCCT
TAGACATACCTTCAAGAACGTTAGACGCGTCTCCTCAAGAGTTAGTTCAGATTAAAAGAC
CATTCACGCCTACACCGAAGAGGGTGAATTTCCTTTTGACACCCAGTACTTGTGATTCAA
GAATAACTACTTCATCACCAGGTCCCTCCCCGTGTCGTGGAAAATCAACCATTAGAAATC
TTTTCCCTAAACTGAGCTTGAAATCACGTATGAATTCGGATACAGAGAAGGTAACTGTCC
CGGATACAGGTCCAGCTGCTGCAGTTGTGCCACAACAAGAGAAGGTATCCATTTCAAGGT
CATGGTCACTTACTAAAATGTTCACGCCTCGCATCAAGAGGACCTCGTCTTTGCCCGTTA
CACCAATTTCACATTCAAATCCTGAGTCTATTAGTGGAAGCATCAACAACTCTCTAACAC
TTGGTACGAAGGAAACACATGTGTGCATATCACGATCGATGTCTTTACCAGTTATTAACA
AAGAAAAAGAGGGAAGCAATAGGAGAGTAGAATTTTTCTTTCGAGTTATTCCTTCAACGC
CTCAAGTGAAGGATGTGGATTCTTCCTCAGTTCCAGCTACGAGTCCTACGAAAGTACCTG
AGGATAATGAGCAGGGTGGTGAAGATATACCAGAAGAGGAAGCTGTTTGTCGAATTTGCC
TAGTTGAGCTGTGTGAAGGCGGAGAGACGCTGAAGATGGAATGCAGCTGCAAAGGCGAAC
TCGCTTTGGCTCATCAAGAATGTGCTTTAAAATGGTTTAGTATCAAAGGTAACAAGACAT
GTGATGTGTGCAGACAAGAAGTCAAGAATCTCCCCGTTACACTCTTGCGTATGCAAAGTG
TTCGAAATGTAAATGCAGGATCCAATAGGTTCCGACATATGGAGTTAAACGGACACAGGG
TTTGGCAGGAACTACCAATTCTTGTTATTGTCAGCATGCTTGCCTACTTTTGCTTTCTTG
AGCAGCTACTGGTTGGGAAAATGGGTACCGGTGCAATTGCTATTTCACTTCCCTTTTCTT
GTGTACTAGGCCTACTCGCGTCAATGACATCTTCAACTATGGTTAAGCGAAGGTTTGTTT
GGGTATATGCATCGGTCCAATTCGCCCTAGTAGTACTATTTGCACATATCTTCTACTCTT
TGGTTCGCGTTCAACCAGTTCTTTCGATTCTGCTATCAACATTTGCTGGCTTTGGAGTTG
CAATGAGTGCAAGTTCGTTACTCGTTGAGTTCTTTAGATGGAAAAGGCGACGAGCAGCCT
TGTTAGAACAGCAGCAGAATGCAGATATGGTTTTGCCTCCAGGAGGATGGCCACAGATGA
ATCAACCTGCTACAACGTCTCGTATAGGTCCTCAAAATCATCAACACGATATAGAAAATC
CTGAGACGTTTAGTTGGAGCTAGATTGTGTCTTATGTTACTGTTACAGCCAAAAAAAGAG
TTGAGTGATTTGTTCATACAGAGTTGTGGAGATTGATGTTTAGTACAAGTTAGAAACTTA
TTGTGTTCTACTCTAAGTTGTGCGGACTCTTCACTTTCCATGCCACACACCCGTGTTGGA
TTCTCCAAAAATACACTATTTTTT