Plant GARDEN
How To ▶︎

JA

EN

TOP > About the Species(Solanum lycopersicum ) > genome data >Gene sequences

Search

By Species By Keywords Genes By Markers By Traits

Let’s Analyze!!

SNP Detection
(lang=JA only) Sequences Other Tools

Data List

All Markers Trait-Related Loci
Solanum lycopersicum

CDS Sequence

CDS ID

Solyc11g068670.2.1
CDS Infomation

Nicalin (AHRD V3.3 *** B9HQ38_POPTR)
Sequence

ATGGCGAATTCTCAGAGACGGCCGGCGGCATTGGATCCCGTCTACTATCCGGTGGTAGCA
TTGGCGTTAATCCTTGTTGCATGTGTTGACTTCTGCGACGCCGTCACGGTCGTCGACGTT
TATCGCTTGGTTCAGTATGATCTCTCCGGTGTCCCTTTCGGATCTCGGCTCGCTACTCTC
AATCACCACGCCGGCTCCTCGTTCTTCGCTTCTAGCTCAACTGTAGATCTCTCTCGCACT
GTACTCATGCTTCCTGTTCGTGAATTGGACCTCGATCTCATTAAAGAATACATTGGACAG
GGCAAGCTATTAGGGGGCTTACTTCTTTTACTGCCGCCTCAATTTAGTCCAGAAAAAGTA
GAGACTGCAGTTGGTCGTGATGAAAATTTTGACCTTCTGAGAAATAAAGTGTCTGAGCTG
GAACGGTTGCTTATTCATGCTAACATTCCTTATCCTGTGTATTTTGCTTTTGAGGATGAT
AATATCAATGCTGTACTAGCTGAAGTCAAGAGAAATGATGCTAGTGGTCAACCTGCAACT
GCTACAACAGGCGGATACAAGCTTGTTGTTGCTGCCTCAGATCCTAAGAAAATTGCATCT
CCCACCATTACAAATATTCAGGGATGGTTACCCGGGCTTAAACCTGATGGAGACTCAAGT
CAACTCCCTACTATTGCCATAGTGGCTTCGTATGACACGTTTGGGGCTGCACCGGCATTG
TCAGTTGGAAGTGATAGCAATGGAAGTGGTGTTGTGGCACTTCTTGAGATAGCTAGGCTG
TTTTCTGTTCTGTATTCAAATCCTAAAACAAGGGGTAGATATAACTTACTTTTTGGATTG
ACGTCTGGTGGGCCTTATAACTTCAACGGAACTCAGAAGTGGCTTCGAAGTTTTGACCAA
CGCCTACGGGAGAGTATCGACTATGCCATTTGCTTGAATAGTCTTGGCTCCTTGGGCAAT
GAGTTACATCTTCATGTTTCTAAACCTCCTGAAAACACATACATACAACAAATATTTCAG
GGTTTCTCCAGTGTAGCAGAAGAATCGGGGCTTCAAGTTGGTCTTAAGCACAAAAAAATA
AACATCTCCAGTCCTCGAGTAGCCTGGGAGCATGAGCAGTTTTCAAGGCTGCGAGTCACT
GCAGCAACAATTTCTGAGCTTTCTACTGCACCTGAATTGTTAGAAGGCACTGGAAGTTTG
TCTGATAACAGACGTTCTGTTAGTGAAGCCTCCATCATTCGAAGTGTCAAGCTTGTTGCT
GAAAGTGTAGCAAGACATATATACAGCCAGGAAGGAAAAGGCACAAATATATTTGCAGAC
GATGGTAGTTTAGCTGTCAATCCTTCCTATGTACGGTCCTGGCTGGATCTTTTGTCTACT
ACCTCTCGAGTGGCACCTTTTCTTTCAAAGAGTGACCCACTTATCATGGCACTGCAAAAG
GAATTAGCTGATCATACTGCTGAGGTGAATGTACAGCATGAGACGCTAGACGAGACTTTC
ACTTTTTATGATTCAATTAGTGGCAGATTACATGTATATCAGGTTGCGAGCGTGACTTTT
GACTTGCTCTTGCTGTTGGTTCTTGGATCATACTTGATAACACTTTTCAGTTTTCTCGTT
ATCACCACCAGGGGTCTTGACGATCTTATCAGTCTATTCCGACGTCCTCCATCCCGGAAA
GTGAAAGCTGTGTGA

Peptide Sequence

PEP ID

Solyc11g068670.2.1
PEP Infomation

Nicalin (AHRD V3.3 *** B9HQ38_POPTR)
Sequence

MANSQRRPAALDPVYYPVVALALILVACVDFCDAVTVVDVYRLVQYDLSGVPFGSRLATL
NHHAGSSFFASSSTVDLSRTVLMLPVRELDLDLIKEYIGQGKLLGGLLLLLPPQFSPEKV
ETAVGRDENFDLLRNKVSELERLLIHANIPYPVYFAFEDDNINAVLAEVKRNDASGQPAT
ATTGGYKLVVAASDPKKIASPTITNIQGWLPGLKPDGDSSQLPTIAIVASYDTFGAAPAL
SVGSDSNGSGVVALLEIARLFSVLYSNPKTRGRYNLLFGLTSGGPYNFNGTQKWLRSFDQ
RLRESIDYAICLNSLGSLGNELHLHVSKPPENTYIQQIFQGFSSVAEESGLQVGLKHKKI
NISSPRVAWEHEQFSRLRVTAATISELSTAPELLEGTGSLSDNRRSVSEASIIRSVKLVA
ESVARHIYSQEGKGTNIFADDGSLAVNPSYVRSWLDLLSTTSRVAPFLSKSDPLIMALQK
ELADHTAEVNVQHETLDETFTFYDSISGRLHVYQVASVTFDLLLLLVLGSYLITLFSFLV
ITTRGLDDLISLFRRPPSRKVKAV*

Transcript Sequence

Transcript ID

Solyc11g068670.2.1
Transcript Infomation

Nicalin (AHRD V3.3 *** B9HQ38_POPTR)
Sequence

CCACTACCACTCCACAAAAGACACTTCCATTACAATACGCAGCCTATTAGCATCAACTCA
TCCATCGGATATTTCTCTTCTGCAGAACCCTACCCCCCACCCCCACCCCCCACCCCAGCA
GCCATTCTTCAATGGCGAATTCTCAGAGACGGCCGGCGGCATTGGATCCCGTCTACTATC
CGGTGGTAGCATTGGCGTTAATCCTTGTTGCATGTGTTGACTTCTGCGACGCCGTCACGG
TCGTCGACGTTTATCGCTTGGTTCAGTATGATCTCTCCGGTGTCCCTTTCGGATCTCGGC
TCGCTACTCTCAATCACCACGCCGGCTCCTCGTTCTTCGCTTCTAGCTCAACTGTAGATC
TCTCTCGCACTGTACTCATGCTTCCTGTTCGTGAATTGGACCTCGATCTCATTAAAGAAT
ACATTGGACAGGGCAAGCTATTAGGGGGCTTACTTCTTTTACTGCCGCCTCAATTTAGTC
CAGAAAAAGTAGAGACTGCAGTTGGTCGTGATGAAAATTTTGACCTTCTGAGAAATAAAG
TGTCTGAGCTGGAACGGTTGCTTATTCATGCTAACATTCCTTATCCTGTGTATTTTGCTT
TTGAGGATGATAATATCAATGCTGTACTAGCTGAAGTCAAGAGAAATGATGCTAGTGGTC
AACCTGCAACTGCTACAACAGGCGGATACAAGCTTGTTGTTGCTGCCTCAGATCCTAAGA
AAATTGCATCTCCCACCATTACAAATATTCAGGGATGGTTACCCGGGCTTAAACCTGATG
GAGACTCAAGTCAACTCCCTACTATTGCCATAGTGGCTTCGTATGACACGTTTGGGGCTG
CACCGGCATTGTCAGTTGGAAGTGATAGCAATGGAAGTGGTGTTGTGGCACTTCTTGAGA
TAGCTAGGCTGTTTTCTGTTCTGTATTCAAATCCTAAAACAAGGGGTAGATATAACTTAC
TTTTTGGATTGACGTCTGGTGGGCCTTATAACTTCAACGGAACTCAGAAGTGGCTTCGAA
GTTTTGACCAACGCCTACGGGAGAGTATCGACTATGCCATTTGCTTGAATAGTCTTGGCT
CCTTGGGCAATGAGTTACATCTTCATGTTTCTAAACCTCCTGAAAACACATACATACAAC
AAATATTTCAGGGTTTCTCCAGTGTAGCAGAAGAATCGGGGCTTCAAGTTGGTCTTAAGC
ACAAAAAAATAAACATCTCCAGTCCTCGAGTAGCCTGGGAGCATGAGCAGTTTTCAAGGC
TGCGAGTCACTGCAGCAACAATTTCTGAGCTTTCTACTGCACCTGAATTGTTAGAAGGCA
CTGGAAGTTTGTCTGATAACAGACGTTCTGTTAGTGAAGCCTCCATCATTCGAAGTGTCA
AGCTTGTTGCTGAAAGTGTAGCAAGACATATATACAGCCAGGAAGGAAAAGGCACAAATA
TATTTGCAGACGATGGTAGTTTAGCTGTCAATCCTTCCTATGTACGGTCCTGGCTGGATC
TTTTGTCTACTACCTCTCGAGTGGCACCTTTTCTTTCAAAGAGTGACCCACTTATCATGG
CACTGCAAAAGGAATTAGCTGATCATACTGCTGAGGTGAATGTACAGCATGAGACGCTAG
ACGAGACTTTCACTTTTTATGATTCAATTAGTGGCAGATTACATGTATATCAGGTTGCGA
GCGTGACTTTTGACTTGCTCTTGCTGTTGGTTCTTGGATCATACTTGATAACACTTTTCA
GTTTTCTCGTTATCACCACCAGGGGTCTTGACGATCTTATCAGTCTATTCCGACGTCCTC
CATCCCGGAAAGTGAAAGCTGTGTGATTTCTTGAGGTGGGGATATGTTCACACTTGAGGT
CTCCAGTAAACTATGAATTGCTCACCATCGATCTGTAGTTTAACGTGTCGTTATTTAGAA
GCTTTCGACGAATTTCCATGGGAGAAACTCCACATATTTTACTTTGGTGGTGCGACTACA
TGCATAGTTATAAATTTTTTGCTTAGTTACAAATGTAATTTCCATAACATGCTACTTAGA
GATGTTAACTTCGAGCTTCATATTAATTTGCCGGCAGTTATCACATTGATTTGCAGACAG
TTAACCATTGAAACTATCGAAAAATAAGTTGTTTCCAGATTATAACATGCAATTTGTATT
ATTAATTAATATCAAGTAAAGACACTTTTAGTTATGTTCTTTACTACGTTTTCAGCCCAG
TAGCACGTCTACGTACCGTTTTAAACATATATAGATACGTATCACTCTGATCATATGTGC
ATGATACAACAGAAATAGTCAAAAACAAATTTGGTAAATTCAAGAAAAGGTTATTTATTG
AGGAGGACCTGTCTGTAGAACACCAAGTGAAACAGAAATTATTTGAAGATGCAAACATTT
ATCAGTCCCTACTACCAGAAGTAGAAGCAGAGAAGAAAGGAAGTCAAGCTCCAACGCCAC
AACCCGAAACACACCAGTGGGTAGATTTAAGGCAGAAAATAACGCGTTCAAGGTTTCAGC
GAGATAAGATACAGTCATACTAGTACTAGACAGAAAGAAGAAACTATTATCTCATCATTC
AGTTGCTTTTCCTTTACGTCTGCTGCTATTGCTGGTTTCGATGAGATAACATACCATGGA
ATCCACATCATCCCCAAATATGCTATAAGCCTCTATCACTCGTGCATAGCTAAATCCCAT
CGACAGC