Plant GARDEN
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TOP > About the Species(Solanum lycopersicum ) > genome data >Gene sequences

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SNP Detection
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Data List

All Markers Trait-Related Loci
Solanum lycopersicum

CDS Sequence

CDS ID

Solyc11g066920.1.1
CDS Infomation

Pentatricopeptide repeat-containing protein family (AHRD V3.3 *** A0A151R9G8_CAJCA)
Sequence

ATGGCTTCAGCCATGGATATATCAACAATGGCGCAAGCCATGCAGCTCCATGCCCGACTA
CTCAAATCGGGTCAAGAAGACCCAACCCATTTCCAAAATCTCAGCAAACTCTTCACTTTC
TCCGCTCTTTCGCCGTCCGGTGACCTCACCTACGCCCGCCATATCTTAACCAATCTCCGA
ACCCCAAATTCATACTACTACAACACCATGATTCGTGCATATTCGGATTCTATTGACCCG
ACCCGATCTATCACCCTCTTCCTCTCAATGCATTGCAGAGAAGAACAACCCGGGGTTGTC
GTACCCGGACCCGATAAGTTCACTTACCCGTTTGTACTTAAAGCTTGTTCGAAGTTACGG
AATACCCAGATGGGGAAACAGATTCATGGGTTGATTTTCAAGTCGGGTTTGATATCGGAC
CGTTATGTGAACAATGCCCTTATCCATATGTATGCAGGTTGTGGTGATTCAGGTCTTGCT
TTGAAGGTGTTTGATGAAATGTCTGAAAGAGATGTTGTTTCTTGGACTTCAATGATTGAT
GGTTTTGTTGATAATAATAGACCTATTGAAGCTATTAAGTTGTTTGAATTGATGATGGAG
AGTGGCGTTGATCCGAACGAAGCTACTCTCGTTTCGGTTTTGAGAGCTTGTGCTGATACT
GGAGCTTTAAGTATTGGGAAGAAAGTTCATAGCTTTGTGAAGGAGAAGGATCTTGGTATG
AAGGCTAATGTTGGTACCGCGCTTATTGATATGTACGCGAAATGTGGGTGCATAGATGAT
GCACGACGAGTGTTTGATGAGACGATGGATAAGGATGTTTATGCTTGGACAGCAATGATA
TCTGGTCTTGCTAGTCATGGGCTATCGGAAGAGGCTATGGAACATTTTGAGTTGATGAAG
AGTTGTAGTGTAAAACCGGATGAAAGAACGATGACTGCTGTTTTATCAGCTTGTAGGAAT
GCTGGTTGGATTGGTAAAGGATTGTATCATATAAGGAGTATGAAGAAGTATAAGTTAAGA
CCAACGATTCAGCATTATGGATGCATAGTAGATACGTTTGTACGTGCTGGACAGTTAGAC
GAGGCAGAGCAGTTTATCAGGAAGATGATGCCAATTGATCCGGATGTTGTGCTATGGAGG
ACGTTGTTATGGGGTTGTAAGGTTCACGGAGATGTTGAAAGGAGTAAACGCTTACTAAAG
GACGTTGAGCTTTTGAAAATGGACTCTCGTGATTGTGGGAGTTATGTACTTCTTGGGAAC
GTCTATGCAGCCACAGGGAATTGGAAGGAGAAGGCGAAGATGAGAGAGTTGATGAATCAA
AGAGGGTTAGTGAAGTCACCGGGGTGTAGCAGGATTGAGACTGATGGCAACGTCCATGAA
TTTACAGCTGGAGACTCCAGACATGTTGAAGCAGAACATGTTTACGCAAAATTAGATGAA
ATGGAACAAAACGTTAGAAGAGAAGGCTATGACCCTAAAGTTTCAGAAGTCTTACTTGAA
ATAGATGATGATGAGAAAGCATCTCAGCTTCTCCATCACAGTGAGAAACTCGCGGTGTCC
TTTGGACTCATCAGAACTGACCCGGGAACTGTTATTAGGATAGTGAAGAACTTGAGGTCT
TGTGAGGACTGTCATTCTTTCATGAAACTAATCTCAAAGTTATACCACAGAGAGATTATC
ATAAGGGATCGTATACGTTACCATCATTTCAAGGATGGTGAATGTTCTTGTGGAGATAGA
TGGTGA

Peptide Sequence

PEP ID

Solyc11g066920.1.1
PEP Infomation

Pentatricopeptide repeat-containing protein family (AHRD V3.3 *** A0A151R9G8_CAJCA)
Sequence

MASAMDISTMAQAMQLHARLLKSGQEDPTHFQNLSKLFTFSALSPSGDLTYARHILTNLR
TPNSYYYNTMIRAYSDSIDPTRSITLFLSMHCREEQPGVVVPGPDKFTYPFVLKACSKLR
NTQMGKQIHGLIFKSGLISDRYVNNALIHMYAGCGDSGLALKVFDEMSERDVVSWTSMID
GFVDNNRPIEAIKLFELMMESGVDPNEATLVSVLRACADTGALSIGKKVHSFVKEKDLGM
KANVGTALIDMYAKCGCIDDARRVFDETMDKDVYAWTAMISGLASHGLSEEAMEHFELMK
SCSVKPDERTMTAVLSACRNAGWIGKGLYHIRSMKKYKLRPTIQHYGCIVDTFVRAGQLD
EAEQFIRKMMPIDPDVVLWRTLLWGCKVHGDVERSKRLLKDVELLKMDSRDCGSYVLLGN
VYAATGNWKEKAKMRELMNQRGLVKSPGCSRIETDGNVHEFTAGDSRHVEAEHVYAKLDE
MEQNVRREGYDPKVSEVLLEIDDDEKASQLLHHSEKLAVSFGLIRTDPGTVIRIVKNLRS
CEDCHSFMKLISKLYHREIIIRDRIRYHHFKDGECSCGDRW*

Transcript Sequence

Transcript ID

Solyc11g066920.1.1
Transcript Infomation

Pentatricopeptide repeat-containing protein family (AHRD V3.3 *** A0A151R9G8_CAJCA)
Sequence

ATGGCTTCAGCCATGGATATATCAACAATGGCGCAAGCCATGCAGCTCCATGCCCGACTA
CTCAAATCGGGTCAAGAAGACCCAACCCATTTCCAAAATCTCAGCAAACTCTTCACTTTC
TCCGCTCTTTCGCCGTCCGGTGACCTCACCTACGCCCGCCATATCTTAACCAATCTCCGA
ACCCCAAATTCATACTACTACAACACCATGATTCGTGCATATTCGGATTCTATTGACCCG
ACCCGATCTATCACCCTCTTCCTCTCAATGCATTGCAGAGAAGAACAACCCGGGGTTGTC
GTACCCGGACCCGATAAGTTCACTTACCCGTTTGTACTTAAAGCTTGTTCGAAGTTACGG
AATACCCAGATGGGGAAACAGATTCATGGGTTGATTTTCAAGTCGGGTTTGATATCGGAC
CGTTATGTGAACAATGCCCTTATCCATATGTATGCAGGTTGTGGTGATTCAGGTCTTGCT
TTGAAGGTGTTTGATGAAATGTCTGAAAGAGATGTTGTTTCTTGGACTTCAATGATTGAT
GGTTTTGTTGATAATAATAGACCTATTGAAGCTATTAAGTTGTTTGAATTGATGATGGAG
AGTGGCGTTGATCCGAACGAAGCTACTCTCGTTTCGGTTTTGAGAGCTTGTGCTGATACT
GGAGCTTTAAGTATTGGGAAGAAAGTTCATAGCTTTGTGAAGGAGAAGGATCTTGGTATG
AAGGCTAATGTTGGTACCGCGCTTATTGATATGTACGCGAAATGTGGGTGCATAGATGAT
GCACGACGAGTGTTTGATGAGACGATGGATAAGGATGTTTATGCTTGGACAGCAATGATA
TCTGGTCTTGCTAGTCATGGGCTATCGGAAGAGGCTATGGAACATTTTGAGTTGATGAAG
AGTTGTAGTGTAAAACCGGATGAAAGAACGATGACTGCTGTTTTATCAGCTTGTAGGAAT
GCTGGTTGGATTGGTAAAGGATTGTATCATATAAGGAGTATGAAGAAGTATAAGTTAAGA
CCAACGATTCAGCATTATGGATGCATAGTAGATACGTTTGTACGTGCTGGACAGTTAGAC
GAGGCAGAGCAGTTTATCAGGAAGATGATGCCAATTGATCCGGATGTTGTGCTATGGAGG
ACGTTGTTATGGGGTTGTAAGGTTCACGGAGATGTTGAAAGGAGTAAACGCTTACTAAAG
GACGTTGAGCTTTTGAAAATGGACTCTCGTGATTGTGGGAGTTATGTACTTCTTGGGAAC
GTCTATGCAGCCACAGGGAATTGGAAGGAGAAGGCGAAGATGAGAGAGTTGATGAATCAA
AGAGGGTTAGTGAAGTCACCGGGGTGTAGCAGGATTGAGACTGATGGCAACGTCCATGAA
TTTACAGCTGGAGACTCCAGACATGTTGAAGCAGAACATGTTTACGCAAAATTAGATGAA
ATGGAACAAAACGTTAGAAGAGAAGGCTATGACCCTAAAGTTTCAGAAGTCTTACTTGAA
ATAGATGATGATGAGAAAGCATCTCAGCTTCTCCATCACAGTGAGAAACTCGCGGTGTCC
TTTGGACTCATCAGAACTGACCCGGGAACTGTTATTAGGATAGTGAAGAACTTGAGGTCT
TGTGAGGACTGTCATTCTTTCATGAAACTAATCTCAAAGTTATACCACAGAGAGATTATC
ATAAGGGATCGTATACGTTACCATCATTTCAAGGATGGTGAATGTTCTTGTGGAGATAGA
TGGTGA