Gene sequences

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SNP Detection
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Trait-Related Loci

Solanum lycopersicum

CDS Sequence

CDS ID	Solyc11g066730.2.1
CDS Infomation	phototropic-responsive NPH3 family protein
Sequence	ATGGCGCCGGCTGCGAAGGTCACTGGATTCTACCGTGAGGGAAATGACTGGTTTTGCAAT GCAAGTTTGGTCAGTGATTTTACGTTGGTTGTGGACGGAGTAAACTTCCACCTTCACAAG TTTCCACTTATGTCGAGATGTGGAAGGATTGACAAACTACTAGGAGCAGTTCAAGGTCCA CATGAAGGGACTTTCCTGACAACTTTAGAAGACTTCCCTGGTGGAAGTGACATATTTTTA GTCACAGTTAAATTCTGCTACGGTATTCGAATAGAATATACCCCAAGGAACATAGTAATG ATTTATTGTGCAGCAGATTATTTGGAGATGACAGAGGACTATGGTGAAGATAATTTACTG TTTAAGGCAGATGCTTACTTTCATAAGAATATTCTGAAGAATTGGAAAGATTGCATATTA GCTCTCCAAAGTTGTGATTCTATCATACCAAGAGCAGACAAGCTAGAGATCATTAGTAAA TGCTCGCATGCTCTCTCTGTGATGGTCTGCACAGATCCTAGTTTATTTGGATGGCCTATG TTGTTGTATGGCTGTTTACAGAGCCCTGGAGGTAGTATATTGTGGAATGGAATTAACACC GGTGCTAGAATCCAAACCATTGAATCTGACTGGTGGTTCGAAGACATCTCATATCTTTCT GTGCCATTATTTCAGAGACTAATTCGAACAATGGAAGTCAGAGGTATTAGACATGAAAAT TTAGCAGGTGCTATGATGTACTACTGTAGGAAGTACCTTCCAGGACTTGGCCGGTGGCAG AGTGGGCAAATTGGTAAAACTAGAACAGTTGCTAGTTTCAGTATGACACCAGCTGCTGTC AATCAGAAAGTTCTTCTTGAAAGTGTTGCTAAACAGCTTCCTGAATTGAAGGGCAAGTCT TTTTGCCGTTTCTTGTTGGGACTTCTGCGAGTTGCCTTGATACTTGGTGTGCAGCAGACA TGCCTGGACTCGTTGGAGAGGAGAACAGGAATGCAGTTGGACTTAGCATCCCTAGATGGT TTGCTGATACCTTCCTACTCAGATTCTGATACACTATATAACACTGACTGTGTTGAACGA ATGATTCACCATTTTATATCTTTTGAATCTGGGATCACTGCAATACCTAATCCATCTTCA TTTGAGATAGGAACATCACCATCATCCCATCCTTTAAGGAGAGTGGCGAAGTTGGTTGAC AGCTATATTGCAGAAGTTGCATCTGATGTGAACCTAAAGCCAGAAAAAGTGCGTTCACTT GCTGAAGCTCTCCCAGAATCTTCAAGATCTCTGCATGATGGGCTATATAGAGCTCTAGAT ATATACTTCAAGGCGCATCCTTGGCTTTCAGCAAAAGAGAAGGAGCAGCTTTGCAACATC ATTGACTGTCAGAAGCTCTCTATTGATGCTTGCGCCCATGCATCCCAGAATGACAGATTG CCTCTTCGAGTTGTTCTCCAAGTTCTTTTCTTCGGGCAATTGCAGCTTAGAACAGCTGTA GCTGGTCGCTTCCAAGTCTTGGATACAGAGAGTGGTCCTGCAGCTCCCGTCACTGGCCCT AGTGACATGGCAGGTCAAATTGTACAAAGAGACGGATGGGTGACAGTCGTGCGTGAGAAC CAGGGTCTAAAGGTGGACTTGGAAAGAATGAAGTCCAGGGTTGGTGAACTTGAAGAAGAA TTCAGCAAAATCAAACAAGAGATGAGAAAGGTCACAAAGTCACATAGTTACCTCAGTTCT CCGCGCTTTCTTGCCCGAAGGTTTGGATGCAAGCTCCTTCCCCAATCCTCGGATACTCAA CCAGACGTGGTTGAAAGCACAGGTCCAACCCCAAGAGCATCAGTTGAGCAACCGAGAAGC TCAAGACACCGTAAAAGCTCCTCTTTGATTTCATGA

Peptide Sequence

PEP ID	Solyc11g066730.2.1
PEP Infomation	phototropic-responsive NPH3 family protein
Sequence	MAPAAKVTGFYREGNDWFCNASLVSDFTLVVDGVNFHLHKFPLMSRCGRIDKLLGAVQGP HEGTFLTTLEDFPGGSDIFLVTVKFCYGIRIEYTPRNIVMIYCAADYLEMTEDYGEDNLL FKADAYFHKNILKNWKDCILALQSCDSIIPRADKLEIISKCSHALSVMVCTDPSLFGWPM LLYGCLQSPGGSILWNGINTGARIQTIESDWWFEDISYLSVPLFQRLIRTMEVRGIRHEN LAGAMMYYCRKYLPGLGRWQSGQIGKTRTVASFSMTPAAVNQKVLLESVAKQLPELKGKS FCRFLLGLLRVALILGVQQTCLDSLERRTGMQLDLASLDGLLIPSYSDSDTLYNTDCVER MIHHFISFESGITAIPNPSSFEIGTSPSSHPLRRVAKLVDSYIAEVASDVNLKPEKVRSL AEALPESSRSLHDGLYRALDIYFKAHPWLSAKEKEQLCNIIDCQKLSIDACAHASQNDRL PLRVVLQVLFFGQLQLRTAVAGRFQVLDTESGPAAPVTGPSDMAGQIVQRDGWVTVVREN QGLKVDLERMKSRVGELEEEFSKIKQEMRKVTKSHSYLSSPRFLARRFGCKLLPQSSDTQ PDVVESTGPTPRASVEQPRSSRHRKSSSLIS*

Transcript Sequence

Transcript ID	Solyc11g066730.2.1
Transcript Infomation	phototropic-responsive NPH3 family protein
Sequence	AGACATCCCTTATTGGTAGGGGGTTAAGAAGCTTAGCTGTAAGAGAGGGGGACCAATGAT TATGATTTTCTTTTTGGTGTCTAATTAATTAGTGGATTCTTATGACCCTTTAAGGTTTGA CTCATGTTGGACTTCATTTATGTGGCTCCCATGTTTGGTGATTTTGCTTTTTTCCTTTGA TGGGGGTTTGTATAATTTGGTAATTAATTGCCAGCATCATATAGGTTCAGATGCTTTCAA TTGAATTCAGTAGAATTTGTGTCGGAGGAAAAAGGTGTGTAAGTTGTGTTGGAGAAAATA CAAATTGAGTGAAGGGGTGAGAAACAAAGTTGTTGTGTTCTGGAGTTTGGATCATTGATG GCGCCGGCTGCGAAGGTCACTGGATTCTACCGTGAGGGAAATGACTGGTTTTGCAATGCA AGTTTGGTCAGTGATTTTACGTTGGTTGTGGACGGAGTAAACTTCCACCTTCACAAGTTT CCACTTATGTCGAGATGTGGAAGGATTGACAAACTACTAGGAGCAGTTCAAGGTCCACAT GAAGGGACTTTCCTGACAACTTTAGAAGACTTCCCTGGTGGAAGTGACATATTTTTAGTC ACAGTTAAATTCTGCTACGGTATTCGAATAGAATATACCCCAAGGAACATAGTAATGATT TATTGTGCAGCAGATTATTTGGAGATGACAGAGGACTATGGTGAAGATAATTTACTGTTT AAGGCAGATGCTTACTTTCATAAGAATATTCTGAAGAATTGGAAAGATTGCATATTAGCT CTCCAAAGTTGTGATTCTATCATACCAAGAGCAGACAAGCTAGAGATCATTAGTAAATGC TCGCATGCTCTCTCTGTGATGGTCTGCACAGATCCTAGTTTATTTGGATGGCCTATGTTG TTGTATGGCTGTTTACAGAGCCCTGGAGGTAGTATATTGTGGAATGGAATTAACACCGGT GCTAGAATCCAAACCATTGAATCTGACTGGTGGTTCGAAGACATCTCATATCTTTCTGTG CCATTATTTCAGAGACTAATTCGAACAATGGAAGTCAGAGGTATTAGACATGAAAATTTA GCAGGTGCTATGATGTACTACTGTAGGAAGTACCTTCCAGGACTTGGCCGGTGGCAGAGT GGGCAAATTGGTAAAACTAGAACAGTTGCTAGTTTCAGTATGACACCAGCTGCTGTCAAT CAGAAAGTTCTTCTTGAAAGTGTTGCTAAACAGCTTCCTGAATTGAAGGGCAAGTCTTTT TGCCGTTTCTTGTTGGGACTTCTGCGAGTTGCCTTGATACTTGGTGTGCAGCAGACATGC CTGGACTCGTTGGAGAGGAGAACAGGAATGCAGTTGGACTTAGCATCCCTAGATGGTTTG CTGATACCTTCCTACTCAGATTCTGATACACTATATAACACTGACTGTGTTGAACGAATG ATTCACCATTTTATATCTTTTGAATCTGGGATCACTGCAATACCTAATCCATCTTCATTT GAGATAGGAACATCACCATCATCCCATCCTTTAAGGAGAGTGGCGAAGTTGGTTGACAGC TATATTGCAGAAGTTGCATCTGATGTGAACCTAAAGCCAGAAAAAGTGCGTTCACTTGCT GAAGCTCTCCCAGAATCTTCAAGATCTCTGCATGATGGGCTATATAGAGCTCTAGATATA TACTTCAAGGCGCATCCTTGGCTTTCAGCAAAAGAGAAGGAGCAGCTTTGCAACATCATT GACTGTCAGAAGCTCTCTATTGATGCTTGCGCCCATGCATCCCAGAATGACAGATTGCCT CTTCGAGTTGTTCTCCAAGTTCTTTTCTTCGGGCAATTGCAGCTTAGAACAGCTGTAGCT GGTCGCTTCCAAGTCTTGGATACAGAGAGTGGTCCTGCAGCTCCCGTCACTGGCCCTAGT GACATGGCAGGTCAAATTGTACAAAGAGACGGATGGGTGACAGTCGTGCGTGAGAACCAG GGTCTAAAGGTGGACTTGGAAAGAATGAAGTCCAGGGTTGGTGAACTTGAAGAAGAATTC AGCAAAATCAAACAAGAGATGAGAAAGGTCACAAAGTCACATAGTTACCTCAGTTCTCCG CGCTTTCTTGCCCGAAGGTTTGGATGCAAGCTCCTTCCCCAATCCTCGGATACTCAACCA GACGTGGTTGAAAGCACAGGTCCAACCCCAAGAGCATCAGTTGAGCAACCGAGAAGCTCA AGACACCGTAAAAGCTCCTCTTTGATTTCATGACGAGAAGACTCAGGTTTGATGTCTATT CCCCCTCCACACCAGAATTCTCGCCACTACATGTTTGGAATAGATTCATCCCTTGGTAAT TCAGGGCACCTATATATCCCTTTGAGAAACCATTTCGAATTCATTTCATAAGATACAACT GTCCTGCTTGGCTGGCTGATTATATTTAGTACGTCGGTTGGACAACAACAAAAACATAAC GAAAATACTTATCCATCGGAACGATGGTCTCCTGATGGAAGAAGATGAGAAGAAACCAAA TTTATGGTTCAATCTCATGTATCTTGACATAAACATAGAATTCAGCTGATACTAGTAAAT TTCTGTTCCTTTTCTAGGAACAATATAATGGGACTCTGTTGTCCACATTTCTCTCTTATA CATGTACAGCTTCATGAAGAGTTTGTAAAGCTATATGATGAAGGTATTCATGTTTTAGTT TCAAAAGTATACTAGCTATAAAATGGAGGGCTGGTGGTGCTCTAATTATATCTCTAGAAG AATTATACATAAAGCTCTACATTCATTATCTTCAAGTTGTGTGGAATTCTTCTAATTGTT TGTACCAATTGGTTACATATCAAGTTTTGTTATATTTTCATACTATTCCTACTACTACAC TGGTTATGAG