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TOP > About the Species(Solanum lycopersicum ) > genome data >Gene sequences

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SNP Detection
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Data List

All Markers Trait-Related Loci
Solanum lycopersicum

CDS Sequence

CDS ID

Solyc11g040040.2.1
CDS Infomation

Phototropic-responsive NPH3 family protein (AHRD V3.3 *** AT3G19850.1)
Sequence

ATGCCACTACAAGCTCCATGTGATCTACAAATCCATGTAAATGGTCAACAAACATTCTTT
CTGCACCAGAAAGTCCTTTCAAGATTTTCTGGGAAGTTAAGGAAGATAATCAAACAAGAA
AAGAAGAAAACTCAGATTAAGAATTCAGGTATTGAGATTCTTGATTTCCCAGGTGGGGCA
CAAGGGTTTGAACTTATTTCAAGATTCTGTTACAACAATGGTAGCAGCAATAGCATTAAA
ATCACTGTCTCAAATGTTTGCCTTCTCATTTGCTCTGCAGATTTTCTTGAAATGACAGAA
AAGTTGTCTTGTTGCAATCTTTTGTATAAAGCTGAGACTTTTTTTGAAGGATTGTGTTAT
TGGTCCTTTCATGATATTCTGAAATCCCTAAAAAGCTGTGAAACTTTTTTTGATTATGCA
ATTTCTTGTGGGCTGATTGAAAAGCTTATAACTTCACTTCTTGGTACCCTTTTTGGTTCT
TCATGTTCATCATCTTCCTCTTGTTCATCTTCTGAACAAGTAAAGCCATGTTCTTGGTGG
TTTGAGGAAATGACCATTTTACCCCCAAAGATGATAGAAGAGTTTTTAAGGACTTTAGGT
GCTTTTGGTAGTGAGAATAACAGCTTACTCCTCACAAGATTCTTGCTTTATTACCTAAAA
ACATCATCCCATTGTCAAAATATGATTTCAAGAAGTGAGTATAGTGGACTTGCTGACACA
GTAGTTCATGGGGTAGTCAAAACAACATTTTCTTGCAGAAATCTTTTTTGGGTACTGAGA
ATTGTATCTGGTTTCGGGATTAGCAAAGAATGCAGGGGTTGTTTGGAGAAACTGATTGGG
GGGGTGCTTGATCAAGCAACACTAGATGATATCCTTGTTTGTGGTCACAACAATAATATT
GGTGGTGTTTATGATGTGAATCTTGTGATGAGATTGGTTAGAGTTTTTGTTTATCATGAT
AAAGTTACAATAACAAAATTCAGAAAAGTTGCAAGATTAATTGATAAGTATTTGAGAGAG
ATTGCTCCTGACCAAACTCTTAAAATATCAAAGTTTCTTGCTGTTGCTGAGAGTCTACCA
GATTATGCAAGGGATTCTTTTGATGGAGTCTACAGAGCCATTGATATCTATCTTGAGTCT
CATCCAGTCCTTTCATTAGAGGAAAGATCAAGATTATGTAGATGTCTCAACTATGAGAAA
CTAAGCCTTGAAGCATGCAAGGACTTAGCAAAGAATCCAAGAATTTCACCAAGAATTGCT
ATCAAGGCACTTGCTTCTCAATGCTCTTCAAGTATTCCAACAATAGAAGACAATAATAAC
CAAATGGTTTTGTACAAGACAAACAAGAGTGATCATCACAGTTCAAGTGTTGCTAGTGAT
CAACAGAGTTTACAAGAAGAGGAACATGAATATATGAGGCTAAATTTGCAAAAGATGCAA
TGGAGAGTTGTGGAGTTGGAGAAAGTATGTAGAGATATGAAAGGTCAGATGACTAAAATG
GTGAAGACAGGGACTCAGACTAGAGCTCTGCCTAGGCTTTGTAGAAGTCAAAATTTCTAA

Peptide Sequence

PEP ID

Solyc11g040040.2.1
PEP Infomation

Phototropic-responsive NPH3 family protein (AHRD V3.3 *** AT3G19850.1)
Sequence

MPLQAPCDLQIHVNGQQTFFLHQKVLSRFSGKLRKIIKQEKKKTQIKNSGIEILDFPGGA
QGFELISRFCYNNGSSNSIKITVSNVCLLICSADFLEMTEKLSCCNLLYKAETFFEGLCY
WSFHDILKSLKSCETFFDYAISCGLIEKLITSLLGTLFGSSCSSSSSCSSSEQVKPCSWW
FEEMTILPPKMIEEFLRTLGAFGSENNSLLLTRFLLYYLKTSSHCQNMISRSEYSGLADT
VVHGVVKTTFSCRNLFWVLRIVSGFGISKECRGCLEKLIGGVLDQATLDDILVCGHNNNI
GGVYDVNLVMRLVRVFVYHDKVTITKFRKVARLIDKYLREIAPDQTLKISKFLAVAESLP
DYARDSFDGVYRAIDIYLESHPVLSLEERSRLCRCLNYEKLSLEACKDLAKNPRISPRIA
IKALASQCSSSIPTIEDNNNQMVLYKTNKSDHHSSSVASDQQSLQEEEHEYMRLNLQKMQ
WRVVELEKVCRDMKGQMTKMVKTGTQTRALPRLCRSQNF*

Transcript Sequence

Transcript ID

Solyc11g040040.2.1
Transcript Infomation

Phototropic-responsive NPH3 family protein (AHRD V3.3 *** AT3G19850.1)
Sequence

ATCCACATAAGGGGGTGGGGTGGGGATTGTAGTATATAATATCTTTCATATGTAACCAAA
GCTTGTGAGAGGCCATTTGTATCTGTCAATCACTAACTTCAAAGCACTTTTTCATTTTAA
GCTTGTCTTGATTTTCATTGAATGCAAAAGTAGCCATGCCACTACAAGCTCCATGTGATC
TACAAATCCATGTAAATGGTCAACAAACATTCTTTCTGCACCAGAAAGTCCTTTCAAGAT
TTTCTGGGAAGTTAAGGAAGATAATCAAACAAGAAAAGAAGAAAACTCAGATTAAGAATT
CAGGTATTGAGATTCTTGATTTCCCAGGTGGGGCACAAGGGTTTGAACTTATTTCAAGAT
TCTGTTACAACAATGGTAGCAGCAATAGCATTAAAATCACTGTCTCAAATGTTTGCCTTC
TCATTTGCTCTGCAGATTTTCTTGAAATGACAGAAAAGTTGTCTTGTTGCAATCTTTTGT
ATAAAGCTGAGACTTTTTTTGAAGGATTGTGTTATTGGTCCTTTCATGATATTCTGAAAT
CCCTAAAAAGCTGTGAAACTTTTTTTGATTATGCAATTTCTTGTGGGCTGATTGAAAAGC
TTATAACTTCACTTCTTGGTACCCTTTTTGGTTCTTCATGTTCATCATCTTCCTCTTGTT
CATCTTCTGAACAAGTAAAGCCATGTTCTTGGTGGTTTGAGGAAATGACCATTTTACCCC
CAAAGATGATAGAAGAGTTTTTAAGGACTTTAGGTGCTTTTGGTAGTGAGAATAACAGCT
TACTCCTCACAAGATTCTTGCTTTATTACCTAAAAACATCATCCCATTGTCAAAATATGA
TTTCAAGAAGTGAGTATAGTGGACTTGCTGACACAGTAGTTCATGGGGTAGTCAAAACAA
CATTTTCTTGCAGAAATCTTTTTTGGGTACTGAGAATTGTATCTGGTTTCGGGATTAGCA
AAGAATGCAGGGGTTGTTTGGAGAAACTGATTGGGGGGGTGCTTGATCAAGCAACACTAG
ATGATATCCTTGTTTGTGGTCACAACAATAATATTGGTGGTGTTTATGATGTGAATCTTG
TGATGAGATTGGTTAGAGTTTTTGTTTATCATGATAAAGTTACAATAACAAAATTCAGAA
AAGTTGCAAGATTAATTGATAAGTATTTGAGAGAGATTGCTCCTGACCAAACTCTTAAAA
TATCAAAGTTTCTTGCTGTTGCTGAGAGTCTACCAGATTATGCAAGGGATTCTTTTGATG
GAGTCTACAGAGCCATTGATATCTATCTTGAGTCTCATCCAGTCCTTTCATTAGAGGAAA
GATCAAGATTATGTAGATGTCTCAACTATGAGAAACTAAGCCTTGAAGCATGCAAGGACT
TAGCAAAGAATCCAAGAATTTCACCAAGAATTGCTATCAAGGCACTTGCTTCTCAATGCT
CTTCAAGTATTCCAACAATAGAAGACAATAATAACCAAATGGTTTTGTACAAGACAAACA
AGAGTGATCATCACAGTTCAAGTGTTGCTAGTGATCAACAGAGTTTACAAGAAGAGGAAC
ATGAATATATGAGGCTAAATTTGCAAAAGATGCAATGGAGAGTTGTGGAGTTGGAGAAAG
TATGTAGAGATATGAAAGGTCAGATGACTAAAATGGTGAAGACAGGGACTCAGACTAGAG
CTCTGCCTAGGCTTTGTAGAAGTCAAAATTTCTAAACACAGGAAAAAGAAAAAAGAGGAC
ATATGTTGATAGAACACATTTG