Plant GARDEN
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TOP > About the Species(Solanum lycopersicum ) > genome data >Gene sequences

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SNP Detection
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Data List

All Markers Trait-Related Loci
Solanum lycopersicum

CDS Sequence

CDS ID

Solyc11g028100.2.1
CDS Infomation

Elongation factor 1-gamma 1 (AHRD V3.3 *** EF1G1_ORYSJ)
Sequence

ATGTTGCAGATTTTGCACTCAACAAATAACAACAAAAATGCCTCAAAGGCACTCATTGCG
GCTGAGTACACAGGTGTAAAGGTTGAAGTTCCAAAGGATTTCCAGATGGGTGTGTCAAAC
AACACACCTGAGTTTCTTAAGATGAACCCGATTGGAAAGGTTCCTGTGCTTGAAACACCT
GATGGACCTGTTTTTGAGAGCAATGCTATCGCACGCTATGTTACTAAATTAAAGCCCAAC
AATCCTCTTTTTGGATCTTCATTGATTGAATATTCTCAAATTGAACAATGGAATGATTTT
TCTGCCACTGAAGTTGATGCAAACATTGGACGATGGCTGTACCCACGCCTTGGCTTTCGT
GTGTACATCCCTGCGGCCGAGGAAGCTGCGGTAGCTGCATTGAAGAGAGCGCTTGGTGCT
TTGAACACCCATCTTGCATCTAACACATACTTGGTTGGGCATTCAATCACATTGGCTGAC
ATCATTATGGTCTGCAACTTGAGCATTGGTTTTAGGATGATAATGACCAAGAGCTTTACC
AAGGAATTCCCACATGTAGAGAGATACTTCTGGACTGTGGTTAATCAGCCAAACTTCTGC
AAGATATTGCGTGAAGTGAAGCAAGCTGAATCTATCCCAGCTGTGCAATCCAAGAAGCCT
GCACAACCTGAAAAACCCAAGGCTAAGGAGGAGCTAAAGAAGGAGGTTAAGAAGGAAGAA
CCAAGTCCTGTAGAGGAGGAAGCAGCACCCAAACCTAAGGCAAAGAATCCTCTTGATCTC
TTGCCTCCAAGTAAGATGATTCTGGATGACTGGAAGAGGCTTTACTCTAACACCAAGACC
AACTTCCGTGAGGTTGCCGTTAAAGGTTTCTGGGACATGTATGACCCCGAAGGATATTCT
CTCTGGTTTTGTGATTACAAGTACAATGATGAGAACACAGTTTCCTTTGTAACCTTGAAC
AAGGTTGGTGGTTTTCTGCAGAGGATGGATCTGGTTCGCAAGTACGCTTTTGGTAAGATG
TTGATTGTTGGTTCTGAGGCCCCATTCAAGGTGCAGGGCTTGTGGCTTTTCCGTGGAAAG
GAAATTCCCATGTTTGTTATGGAGGAGGTCTATGACATGGAACTCTATGAATGGAAGGAA
GTAGACATCAATGATGAAGCTCAGAAGGAGCGGGTTAGCCAAATGATTGAAGACCACGAG
CCTTTTGAGGGAGAGGCTCTGTTGGACGCGAAGTGCTTCAAGTAA

Peptide Sequence

PEP ID

Solyc11g028100.2.1
PEP Infomation

Elongation factor 1-gamma 1 (AHRD V3.3 *** EF1G1_ORYSJ)
Sequence

MLQILHSTNNNKNASKALIAAEYTGVKVEVPKDFQMGVSNNTPEFLKMNPIGKVPVLETP
DGPVFESNAIARYVTKLKPNNPLFGSSLIEYSQIEQWNDFSATEVDANIGRWLYPRLGFR
VYIPAAEEAAVAALKRALGALNTHLASNTYLVGHSITLADIIMVCNLSIGFRMIMTKSFT
KEFPHVERYFWTVVNQPNFCKILREVKQAESIPAVQSKKPAQPEKPKAKEELKKEVKKEE
PSPVEEEAAPKPKAKNPLDLLPPSKMILDDWKRLYSNTKTNFREVAVKGFWDMYDPEGYS
LWFCDYKYNDENTVSFVTLNKVGGFLQRMDLVRKYAFGKMLIVGSEAPFKVQGLWLFRGK
EIPMFVMEEVYDMELYEWKEVDINDEAQKERVSQMIEDHEPFEGEALLDAKCFK*

Transcript Sequence

Transcript ID

Solyc11g028100.2.1
Transcript Infomation

Elongation factor 1-gamma 1 (AHRD V3.3 *** EF1G1_ORYSJ)
Sequence

AAAAGTACTGGGAGTACTTTGGGCTCCCTCCGGGACCCAGAAATCCGATAAACTTTACTG
TTCAATTTTGGTAACTAATACATCTAGAATCAATTGGTTTCTTCCAAACTTTTTTTGATT
CATAAAAGCAATACTAAATTCATTGAGTGATATATAATGGGACATTGTGATTCAAGCGTA
ATGATAACAAATTTCTTGATGATGCCCAATTTTATATCTTGAATGATATAAAGCATTTAA
ATTGTCTTCATTATGTATGTTGCAGATTTTGCACTCAACAAATAACAACAAAAATGCCTC
AAAGGCACTCATTGCGGCTGAGTACACAGGTGTAAAGGTTGAAGTTCCAAAGGATTTCCA
GATGGGTGTGTCAAACAACACACCTGAGTTTCTTAAGATGAACCCGATTGGAAAGGTTCC
TGTGCTTGAAACACCTGATGGACCTGTTTTTGAGAGCAATGCTATCGCACGCTATGTTAC
TAAATTAAAGCCCAACAATCCTCTTTTTGGATCTTCATTGATTGAATATTCTCAAATTGA
ACAATGGAATGATTTTTCTGCCACTGAAGTTGATGCAAACATTGGACGATGGCTGTACCC
ACGCCTTGGCTTTCGTGTGTACATCCCTGCGGCCGAGGAAGCTGCGGTAGCTGCATTGAA
GAGAGCGCTTGGTGCTTTGAACACCCATCTTGCATCTAACACATACTTGGTTGGGCATTC
AATCACATTGGCTGACATCATTATGGTCTGCAACTTGAGCATTGGTTTTAGGATGATAAT
GACCAAGAGCTTTACCAAGGAATTCCCACATGTAGAGAGATACTTCTGGACTGTGGTTAA
TCAGCCAAACTTCTGCAAGATATTGCGTGAAGTGAAGCAAGCTGAATCTATCCCAGCTGT
GCAATCCAAGAAGCCTGCACAACCTGAAAAACCCAAGGCTAAGGAGGAGCTAAAGAAGGA
GGTTAAGAAGGAAGAACCAAGTCCTGTAGAGGAGGAAGCAGCACCCAAACCTAAGGCAAA
GAATCCTCTTGATCTCTTGCCTCCAAGTAAGATGATTCTGGATGACTGGAAGAGGCTTTA
CTCTAACACCAAGACCAACTTCCGTGAGGTTGCCGTTAAAGGTTTCTGGGACATGTATGA
CCCCGAAGGATATTCTCTCTGGTTTTGTGATTACAAGTACAATGATGAGAACACAGTTTC
CTTTGTAACCTTGAACAAGGTTGGTGGTTTTCTGCAGAGGATGGATCTGGTTCGCAAGTA
CGCTTTTGGTAAGATGTTGATTGTTGGTTCTGAGGCCCCATTCAAGGTGCAGGGCTTGTG
GCTTTTCCGTGGAAAGGAAATTCCCATGTTTGTTATGGAGGAGGTCTATGACATGGAACT
CTATGAATGGAAGGAAGTAGACATCAATGATGAAGCTCAGAAGGAGCGGGTTAGCCAAAT
GATTGAAGACCACGAGCCTTTTGAGGGAGAGGCTCTGTTGGACGCGAAGTGCTTCAAGTA
AAACAACATTGTATTAGATTCAACAATGTTACCTTTTGACTGAGGCTGTAGTTTACTCCG
GTTGTCTTCCCAAATTTACTTAGATTCTTGTTTTAAACACTATATTGTCTTAGAGAAACT
ATGGTTGAATTATGTTATCTTTTCAAGTAAAGCAGTTTTGACAGTCAGGTGAATCACCCC
TTTTAGCATATGCTAACTTCTATTTAGACTGATCAACTTTTGCTTGACTTTTGTTGAACT
AGTATTTTCTTTTCCATTTGTTAAGCAGTCTGTACATCCAAAGGCTTTGGTGTAACGA