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TOP > About the Species(Solanum lycopersicum ) > genome data >Gene sequences

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SNP Detection
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Data List

All Markers Trait-Related Loci
Solanum lycopersicum

CDS Sequence

CDS ID

Solyc11g020300.2.1
CDS Infomation

Protein TIC 40, chloroplastic (AHRD V3.3 *** TIC40_PEA)
Sequence

ATGGAGAACATAGGTATAGTTTCTTCACCTAAAATGGTATTGGGTCTCTCTTCAAACTCA
GTAATTTCAAGCAAACCCTTCTTTGGCCTTCCTCATCTACCCAAAAGACCCTTCAAGAAT
GGAAGAACTGTCAGACCCACAACTTGTTTTGAAGTGGTTTCTTGTTTTCAGGGTCCAAGG
CTCACTAAAAAGATTGTGCTGGGAAAATCAGGGAGGGGTTCTTTTGCTAGCACTACAACT
TCAGGTGGCAAACAGACTTCTTCAGTTGGTGTAAATCCACAATTTTCAGCTCCATCACCA
CCATCTCAAATGGGGTCTCCTCTTTTTTGGATTGGAGTTGGTGTTGGTTTTTCAGCACTT
TTCGCATGGGTGGCTTCATACCTAAAGAAGTACGCTATGCAGCAAGCGCTCAAAACAATG
ATGGGACAAATGAATGGCCAGAATAGTCAGTTTAGCAACACTGCCTTTTCACCTGGACCT
GGGTCACCTTTTCCTTTTCCATTCCCACCACCTCCAGTGTCCGGTCCAGCTAGTTCATCA
CCTCCACCACCTACTGCATCTAGCTCATCTACACCATCAGCTTCATTTGCATCTCAGCCA
GTGACTGTTGATGTATCCGCAACTAAAGTGGAGGAACCTCCCACTGTCAATGTCAAAAAT
GATAAAGAGGCTGAAAAGGAGCCAAAGAAAAATGCTTTTGTTGACATTTCTCCTGATGAA
ACATTCCAGAAGGGTGCCTTTGAAAATTTTAAGGACTCAGCTGAGACAGCTGCGGTAACT
GTTGATCAGGTAACTCAAAATGGAGCTGCTTCACAGTCGGGATTTGGTTCAAATACATCT
GACAGTACCTCATCAACGGGAAAATCTAATCCTCTATTGTCGGTGGATGCTCTGGAGAAA
ATGATGGAAGATCCAACAGTGCAGAAGATGGTTTACCCCTATCTACCCGAGGAGATGAGG
AACCCTACAACATTTAAATGGATGCTACAAAATCCACAATACCGTCAACAGTTGCAGGAC
ATGATGAATAACATGGGTGGAAACCCAGAATGGGACAACCGCATGATGGATTCCTTGAAG
AATTTTGATCTCAGCAGCCCTGAAATCAAGCAACAATTTGATCAGATAGGACTTACTCCC
GAGGAAGTCATTTCGAAGATTATGGCTAATCCTGATGTTGCCATGGCTTTCCAAAATCCA
AGAGTTCAAGCAGCCATCATGGATTGTTCTCAGAATCCACTGAGTATTGCAAAATACCAA
AATGACAAGGAGGTGATGGACGTCTTCAACAAAATATCAGAACTATTCCCTGGGGTGTCA
GGTGCGCCTTGA

Peptide Sequence

PEP ID

Solyc11g020300.2.1
PEP Infomation

Protein TIC 40, chloroplastic (AHRD V3.3 *** TIC40_PEA)
Sequence

MENIGIVSSPKMVLGLSSNSVISSKPFFGLPHLPKRPFKNGRTVRPTTCFEVVSCFQGPR
LTKKIVLGKSGRGSFASTTTSGGKQTSSVGVNPQFSAPSPPSQMGSPLFWIGVGVGFSAL
FAWVASYLKKYAMQQALKTMMGQMNGQNSQFSNTAFSPGPGSPFPFPFPPPPVSGPASSS
PPPPTASSSSTPSASFASQPVTVDVSATKVEEPPTVNVKNDKEAEKEPKKNAFVDISPDE
TFQKGAFENFKDSAETAAVTVDQVTQNGAASQSGFGSNTSDSTSSTGKSNPLLSVDALEK
MMEDPTVQKMVYPYLPEEMRNPTTFKWMLQNPQYRQQLQDMMNNMGGNPEWDNRMMDSLK
NFDLSSPEIKQQFDQIGLTPEEVISKIMANPDVAMAFQNPRVQAAIMDCSQNPLSIAKYQ
NDKEVMDVFNKISELFPGVSGAP*

Transcript Sequence

Transcript ID

Solyc11g020300.2.1
Transcript Infomation

Protein TIC 40, chloroplastic (AHRD V3.3 *** TIC40_PEA)
Sequence

CAAAAATAAAATATACGTGTAAGTAACACAAATTAGATGGACATTTTACTGAATCTGTGA
AAGCTGCTGCGAAACCTATCCATATAACCCGCTCCATTTTCAATTCACAACACTCTTCTC
CAGCCGATATCACACTTACACCTCTCTTCTTTGTTGCAAAATAAGCGAAAAGGAGATATC
ATTTTTGCAGTTCTGATCTTCTTCTTCTGTAATAAGGTGAAGTATCAGCTAAAAATTGAG
TATTTTTCAAGGTGATGGAGAACATAGGTATAGTTTCTTCACCTAAAATGGTATTGGGTC
TCTCTTCAAACTCAGTAATTTCAAGCAAACCCTTCTTTGGCCTTCCTCATCTACCCAAAA
GACCCTTCAAGAATGGAAGAACTGTCAGACCCACAACTTGTTTTGAAGTGGTTTCTTGTT
TTCAGGGTCCAAGGCTCACTAAAAAGATTGTGCTGGGAAAATCAGGGAGGGGTTCTTTTG
CTAGCACTACAACTTCAGGTGGCAAACAGACTTCTTCAGTTGGTGTAAATCCACAATTTT
CAGCTCCATCACCACCATCTCAAATGGGGTCTCCTCTTTTTTGGATTGGAGTTGGTGTTG
GTTTTTCAGCACTTTTCGCATGGGTGGCTTCATACCTAAAGAAGTACGCTATGCAGCAAG
CGCTCAAAACAATGATGGGACAAATGAATGGCCAGAATAGTCAGTTTAGCAACACTGCCT
TTTCACCTGGACCTGGGTCACCTTTTCCTTTTCCATTCCCACCACCTCCAGTGTCCGGTC
CAGCTAGTTCATCACCTCCACCACCTACTGCATCTAGCTCATCTACACCATCAGCTTCAT
TTGCATCTCAGCCAGTGACTGTTGATGTATCCGCAACTAAAGTGGAGGAACCTCCCACTG
TCAATGTCAAAAATGATAAAGAGGCTGAAAAGGAGCCAAAGAAAAATGCTTTTGTTGACA
TTTCTCCTGATGAAACATTCCAGAAGGGTGCCTTTGAAAATTTTAAGGACTCAGCTGAGA
CAGCTGCGGTAACTGTTGATCAGGTAACTCAAAATGGAGCTGCTTCACAGTCGGGATTTG
GTTCAAATACATCTGACAGTACCTCATCAACGGGAAAATCTAATCCTCTATTGTCGGTGG
ATGCTCTGGAGAAAATGATGGAAGATCCAACAGTGCAGAAGATGGTTTACCCCTATCTAC
CCGAGGAGATGAGGAACCCTACAACATTTAAATGGATGCTACAAAATCCACAATACCGTC
AACAGTTGCAGGACATGATGAATAACATGGGTGGAAACCCAGAATGGGACAACCGCATGA
TGGATTCCTTGAAGAATTTTGATCTCAGCAGCCCTGAAATCAAGCAACAATTTGATCAGA
TAGGACTTACTCCCGAGGAAGTCATTTCGAAGATTATGGCTAATCCTGATGTTGCCATGG
CTTTCCAAAATCCAAGAGTTCAAGCAGCCATCATGGATTGTTCTCAGAATCCACTGAGTA
TTGCAAAATACCAAAATGACAAGGAGGTGATGGACGTCTTCAACAAAATATCAGAACTAT
TCCCTGGGGTGTCAGGTGCGCCTTGATTATCTCCGTCCTGCCTAAGCAGCTATTATGTGA
CAACGCTGTCATTTTTGTTCTGTTTGAGTGAAGTATCAGTCAGAATTGTTGGGCTCTGAG
ATGTAGTTTTCGCCCTCTGTTGCAACTCGGATGCACATGAAAACGTCGCTTCCTTTATAT
AAATTCATTGCCCTTCTCAAATTTTGTGGATGTGAACATACTTGCCTTGGCTTACCAGTA
GTCTTTAGAAGCCAATTTCAGTTGTATATTTGCCAGTTTCTTTATGGTTTTAGAGTTACT
TAAGCTTATTCAACTGTATGATTTGATGAAACGGAGGAATAAAAATTTTATTCAATAATT
ACTTCAATTATGAAGTTATCGCTTCTAGTTACTCAGT