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TOP > About the Species(Solanum lycopersicum ) > genome data >Gene sequences

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SNP Detection
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Data List

All Markers Trait-Related Loci
Solanum lycopersicum

CDS Sequence

CDS ID

Solyc11g013320.2.1
CDS Infomation

Rhomboid-like protein (AHRD V3.3 *** K4D6D6_SOLLC)
Sequence

ATGGCAGACAGTTCCAAATCCCAATCTCAGGTTGAAATCAAGCAACAATGTGCTTCAATG
GCGTCGACATTCTCCACTGAGATGACTGCTGATGAGAGAGTTCCATTCCCCTTCTTTAGG
CCATTGTCTCAGAAGAGAGCAAACACATGGATCATTTCTCTCTTTGTGATCCTTCACTTG
GGCGCTTTTACTGTAACAATGATTGTTAACGACTGCTGGGAGAATTCTTATGGAGATTGT
GCTCTAAAACCTCTCCGTAGGTTCTCTTTTCAGCCTCTTTACGAGAATCCTCTGCTCGGT
CCTTCTGCTTCTACGTTAGAAGAAATTGGAGCACTTCAGAAGACATTGTTGACTAATAAT
CAACAGCTCAGGCGTATCTTCACAAGCCCTTGGTTGCATGCAGGGCTTTTCCATCTGATC
ATTAACCTGTCCTCAGTAATCTTTGTGGGACTTCACTTAGAGCAAGAATTCGGATCATTT
AGGATTGGAGTTATCTACATACTCTCAGCTATTACTGGTAGTCTAGTTGCTTCACTTTTC
GTTCAAGATCGGCCATCAGTTTGTTCCTCTGGTGCATTGGTTGGATTGCTTGGTACACTG
CTCTCTGGCCTCATCAGGAATTGGAAATCTTACACCAATAAGTTTGCAGGGCTTGTGGCT
ACCATGACAATCTTGATGACTAATCTTGTCCTCGGACTGATACCTTACATCAATAATTTT
GCGAATATCGGAGGATTTATGTCAGGATTCCTTCTGGGATTTGTGCTCTTGTTCAAGCCT
CAACAAGAGAAACTAGCTCGAAATAAGGGAGGCTTATTTGAATTTGATGCCAAGGACATT
GTCAAATGTAGGAAGAGTTTGGACAAGCCTGTTCAGAGGGGTTCTGCTCTTGTTATCTTT
GCTTTATTGCTCGCAGGAATTATAATGGCAGTTCTGCATGGCATTGACATAAACAAATAC
TGTAGCTGGTGTCACTACTTTGATTGCATTCCATCCAAATGGTGGAGCTGCACTGACAAG
GCATTTCATTGTGAGAAGTTGGTGAGCTCGGAACATCTGACTTTGAGTTGTCCAAATACT
GGTAGATTCAAAGTTTTTCCTTTCACCAACATTTCAGAGGCAAGGTTTCAGGACATATGC
AATCTGATATGTTCCTAG

Peptide Sequence

PEP ID

Solyc11g013320.2.1
PEP Infomation

Rhomboid-like protein (AHRD V3.3 *** K4D6D6_SOLLC)
Sequence

MADSSKSQSQVEIKQQCASMASTFSTEMTADERVPFPFFRPLSQKRANTWIISLFVILHL
GAFTVTMIVNDCWENSYGDCALKPLRRFSFQPLYENPLLGPSASTLEEIGALQKTLLTNN
QQLRRIFTSPWLHAGLFHLIINLSSVIFVGLHLEQEFGSFRIGVIYILSAITGSLVASLF
VQDRPSVCSSGALVGLLGTLLSGLIRNWKSYTNKFAGLVATMTILMTNLVLGLIPYINNF
ANIGGFMSGFLLGFVLLFKPQQEKLARNKGGLFEFDAKDIVKCRKSLDKPVQRGSALVIF
ALLLAGIIMAVLHGIDINKYCSWCHYFDCIPSKWWSCTDKAFHCEKLVSSEHLTLSCPNT
GRFKVFPFTNISEARFQDICNLICS*

Transcript Sequence

Transcript ID

Solyc11g013320.2.1
Transcript Infomation

Rhomboid-like protein (AHRD V3.3 *** K4D6D6_SOLLC)
Sequence

GTTGGCATTCTTCCCGCGAAACAACCCCCCCCCCTCAAATGTCACATGGATTGATCATCC
CCAACTTGTCAAGTTCAATTCGAGCAAATGTGTAATTTGTAAAACTAAACAAAATAATGG
CAGACAGTTCCAAATCCCAATCTCAGGTTGAAATCAAGCAACAATGTGCTTCAATGGCGT
CGACATTCTCCACTGAGATGACTGCTGATGAGAGAGTTCCATTCCCCTTCTTTAGGCCAT
TGTCTCAGAAGAGAGCAAACACATGGATCATTTCTCTCTTTGTGATCCTTCACTTGGGCG
CTTTTACTGTAACAATGATTGTTAACGACTGCTGGGAGAATTCTTATGGAGATTGTGCTC
TAAAACCTCTCCGTAGGTTCTCTTTTCAGCCTCTTTACGAGAATCCTCTGCTCGGTCCTT
CTGCTTCTACGTTAGAAGAAATTGGAGCACTTCAGAAGACATTGTTGACTAATAATCAAC
AGCTCAGGCGTATCTTCACAAGCCCTTGGTTGCATGCAGGGCTTTTCCATCTGATCATTA
ACCTGTCCTCAGTAATCTTTGTGGGACTTCACTTAGAGCAAGAATTCGGATCATTTAGGA
TTGGAGTTATCTACATACTCTCAGCTATTACTGGTAGTCTAGTTGCTTCACTTTTCGTTC
AAGATCGGCCATCAGTTTGTTCCTCTGGTGCATTGGTTGGATTGCTTGGTACACTGCTCT
CTGGCCTCATCAGGAATTGGAAATCTTACACCAATAAGTTTGCAGGGCTTGTGGCTACCA
TGACAATCTTGATGACTAATCTTGTCCTCGGACTGATACCTTACATCAATAATTTTGCGA
ATATCGGAGGATTTATGTCAGGATTCCTTCTGGGATTTGTGCTCTTGTTCAAGCCTCAAC
AAGAGAAACTAGCTCGAAATAAGGGAGGCTTATTTGAATTTGATGCCAAGGACATTGTCA
AATGTAGGAAGAGTTTGGACAAGCCTGTTCAGAGGGGTTCTGCTCTTGTTATCTTTGCTT
TATTGCTCGCAGGAATTATAATGGCAGTTCTGCATGGCATTGACATAAACAAATACTGTA
GCTGGTGTCACTACTTTGATTGCATTCCATCCAAATGGTGGAGCTGCACTGACAAGGCAT
TTCATTGTGAGAAGTTGGTGAGCTCGGAACATCTGACTTTGAGTTGTCCAAATACTGGTA
GATTCAAAGTTTTTCCTTTCACCAACATTTCAGAGGCAAGGTTTCAGGACATATGCAATC
TGATATGTTCCTAGAAGGTCATGATTGAGTTCCGGTGACTAACTTTTCGCAGGATATATG
CTTGTATAAGGTGTAAACTACTTTGCTTCAGAGTTCTTACTCAAATTCTTGTGCATAACA
TCAGCATCAAACTTGTTGCTATGAAGGATTTAGCTGTTGACTTGTGGATAACCTTGTTCC
TCTTGCTTTTAAAGCTTCTTATCTTAGCTGTTGACTTGTCAAAATGTTTTGTTATTTTGA
CAGATTTACGTCTCCATTCAATCAAAGCAAAACCTGGTGCCCAAATGAATATGGATTCAT
TAGTTTGTTTTTTGAGTTTACTCTTTTAAGTTCAATGGTTGCTTTGTTCGTAGTGCATAT
TTTCTCCTTTTGACATAGGAAACTGAGAATGTTCACTTTGTATTTTATAGGCTTCAAAAT
TTTATTTAAAGACATAGGAATCGGTATAAGATGGTGATAGAATATAGAAAAAGAACCTTA
AATCTATGGCGTAAGTTCGAACATTTTTTTCGTTTTCCTTCCAGAAAAAAGAATAATTAA
TTGTAAATGTAATTCTTCAACCAACAAGCGCCCATGGCCTAATGGATAAGGCGCTTGACT
TCTAATCAAGCGATTGTGGGTTCGAGTCCCACTGGGCGTGTGTATTTTTTTTCTCGGTTT
GGTTCTAGGTAAGTGTCATATTTTCAAA