Plant GARDEN
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TOP > About the Species(Solanum lycopersicum ) > genome data >Gene sequences

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SNP Detection
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Data List

All Markers Trait-Related Loci
Solanum lycopersicum

CDS Sequence

CDS ID

Solyc11g013200.2.1
CDS Infomation

holocarboxylase synthetase 2 (AHRD V3.3 *** AT1G37150.2)
Sequence

ATGATTTCTCAATTCAAACACATCTTCTTCACCGCTTCTCTTCGAAAATTTCCCCATTTT
CCATCAATTTTCCCTCTTCCACACCTCAAAGCTTACTCAGCATCACAAGTACTCGGAGGA
AAAATGGAATCGGAAGCACCTGACCGGACTCTTCTTCTACTCGCCGGAAAATCAAATGAG
GAGAACGATGTGGCAAAGGTATTAAAGGATAACAATACTCTTCAACTGCGTAAAAATGGT
GAAGAAGTTGAGGTTATTCTGCCTTCCGAGGTCGAAACGACATTTGAAGATGACGCGTTT
CAAATTGGAGAATACTTTAACTCCCTTTCGACTAAGCGTTTTGGGAGACTACTCATTTAT
TCTCCCAAATTGTCGTCAACTCATGATGTTATTTCACAAAATAACTCTGACTTACCAGTT
GGGACAGTGTGTGTTGCTGATGTGCAACTGAAAGGGAGAGGACGTTCGAGTAATTTGTGG
CAATCACCAAAGGGTTGCCTTTTGTTTTCATTTTCAATACAAATGGAGGACGGTAGAGTG
GTGCCGCATTTGCAGTATGTAGTCTGTCTTGCTATGACAGAGGCCATTAAGGCTATCTGT
TTGGAAAAGGGCATGCCACATCTCGATGTTCGAATAAAGTGGCCAAATGATCTCTATTTA
GGTGGCCTTAAAGTGGGAGGCATCCTAAGCACATCGGTATATAGGTCAAAGAAGTTCTAT
GTTAGTGCTGGAGTTGGATTGAATGTGGGGAACGAGAAGCCTACTACATGCTTAAATGCT
ACTTTGAAGAGAGTGAATCCTCTCTCACGTGAGTTGAAAAGAGAAGATATCATTGCAGCC
TTTTTCAATAAATTTGAGAACCTTTATGATGTTTTCTTAAAACAAGGATTTCAAGCTCTT
GAAGAGTTGTACTATCAGACTTGGTTACACAGTGGACAGAGGGTTATTGTGCAGGAGAGA
AGCGATGATCAGGACCAATTCGTTGAAAATGTAGTCACCATTCAGGGTTTGACATCCTCA
GGGTATTTATTAGGAATCACAGATGATGGTCAAATGTGTGAGTTACACCCAGATGGCAAC
AGTTTTGACTTCTTCAAAGGACTTATCAAAAGAAAAATGAGCTGA

Peptide Sequence

PEP ID

Solyc11g013200.2.1
PEP Infomation

holocarboxylase synthetase 2 (AHRD V3.3 *** AT1G37150.2)
Sequence

MISQFKHIFFTASLRKFPHFPSIFPLPHLKAYSASQVLGGKMESEAPDRTLLLLAGKSNE
ENDVAKVLKDNNTLQLRKNGEEVEVILPSEVETTFEDDAFQIGEYFNSLSTKRFGRLLIY
SPKLSSTHDVISQNNSDLPVGTVCVADVQLKGRGRSSNLWQSPKGCLLFSFSIQMEDGRV
VPHLQYVVCLAMTEAIKAICLEKGMPHLDVRIKWPNDLYLGGLKVGGILSTSVYRSKKFY
VSAGVGLNVGNEKPTTCLNATLKRVNPLSRELKREDIIAAFFNKFENLYDVFLKQGFQAL
EELYYQTWLHSGQRVIVQERSDDQDQFVENVVTIQGLTSSGYLLGITDDGQMCELHPDGN
SFDFFKGLIKRKMS*

Transcript Sequence

Transcript ID

Solyc11g013200.2.1
Transcript Infomation

holocarboxylase synthetase 2 (AHRD V3.3 *** AT1G37150.2)
Sequence

AATTATAATATTTAAAAATTTAAATTATTTCTCAAAATATTCGTCATTTGAAAATTTGAG
TTGTTGCTCAGCTAAATTCTCAGCATTAATTTCTCCGTCTGATGATTTCTCAATTCAAAC
ACATCTTCTTCACCGCTTCTCTTCGAAAATTTCCCCATTTTCCATCAATTTTCCCTCTTC
CACACCTCAAAGCTTACTCAGCATCACAAGTACTCGGAGGAAAAATGGAATCGGAAGCAC
CTGACCGGACTCTTCTTCTACTCGCCGGAAAATCAAATGAGGAGAACGATGTGGCAAAGG
TATTAAAGGATAACAATACTCTTCAACTGCGTAAAAATGGTGAAGAAGTTGAGGTTATTC
TGCCTTCCGAGGTCGAAACGACATTTGAAGATGACGCGTTTCAAATTGGAGAATACTTTA
ACTCCCTTTCGACTAAGCGTTTTGGGAGACTACTCATTTATTCTCCCAAATTGTCGTCAA
CTCATGATGTTATTTCACAAAATAACTCTGACTTACCAGTTGGGACAGTGTGTGTTGCTG
ATGTGCAACTGAAAGGGAGAGGACGTTCGAGTAATTTGTGGCAATCACCAAAGGGTTGCC
TTTTGTTTTCATTTTCAATACAAATGGAGGACGGTAGAGTGGTGCCGCATTTGCAGTATG
TAGTCTGTCTTGCTATGACAGAGGCCATTAAGGCTATCTGTTTGGAAAAGGGCATGCCAC
ATCTCGATGTTCGAATAAAGTGGCCAAATGATCTCTATTTAGGTGGCCTTAAAGTGGGAG
GCATCCTAAGCACATCGGTATATAGGTCAAAGAAGTTCTATGTTAGTGCTGGAGTTGGAT
TGAATGTGGGGAACGAGAAGCCTACTACATGCTTAAATGCTACTTTGAAGAGAGTGAATC
CTCTCTCACGTGAGTTGAAAAGAGAAGATATCATTGCAGCCTTTTTCAATAAATTTGAGA
ACCTTTATGATGTTTTCTTAAAACAAGGATTTCAAGCTCTTGAAGAGTTGTACTATCAGA
CTTGGTTACACAGTGGACAGAGGGTTATTGTGCAGGAGAGAAGCGATGATCAGGACCAAT
TCGTTGAAAATGTAGTCACCATTCAGGGTTTGACATCCTCAGGGTATTTATTAGGAATCA
CAGATGATGGTCAAATGTGTGAGTTACACCCAGATGGCAACAGTTTTGACTTCTTCAAAG
GACTTATCAAAAGAAAAATGAGCTGAAAAGAGATTCATGTTAGGTGACTTCTTATCAAAT
GAGTTTATCCTCTTTTCTGTTTACTTTTACTTCACGTATTCTCTTTTTATTTGCTGATTC
TGTTGCACATAAAGTCATTTCTCTAAATTGTATTTTATTTTATTTTAAAATAGGAACTAA
GATTGCAGTATATTGATTTTCTTTACTGAAGAAAACGTCATTATTTCAACCAAACATTAA
GAAAAAGATTTACGTTTTGTCTTCACTTTTTACAATTTTTCAAGTCTTAAAAGG