Plant GARDEN
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TOP > About the Species(Solanum lycopersicum ) > genome data >Gene sequences

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SNP Detection
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Data List

All Markers Trait-Related Loci
Solanum lycopersicum

CDS Sequence

CDS ID

Solyc11g012475.1.1
CDS Infomation

Pentatricopeptide repeat-containing protein (AHRD V3.3 *** A0A118K094_CYNCS)
Sequence

ATGTTACCATTATCAAGAATGAAATCACTCCTTTCCCCAGTACTTTCAAGACCCACCATC
ATGTTTGTATGCAGGGGATATGGGGTTCTTAGCACTTTCAAGAACCTTAATTCTGCTCAA
ACAATGAACCCCATGAGTAAAGTTTCTTCCTTTAGGTGTTCTACTGTGCAAAATCATAGT
CAAATTCGGGTCTTGAGTAGTGAGGCATCGGGTTCTAATTCTGGTTCTGGTTCTGGTGAG
GTTCATGTGATTGTGGGTCCTATGTTTGCTGGAAAAACTACTACACTTTTGAAGAGGATT
AAGTCTGAGAGAAGCAATGGCAGTTTTCAGGCCAATGGAGTAAAGAATTCCCTCTATTTG
GATGAGACGATAAAAGGTCTCTGTTTCTCAGGAAGGGTGGCTGAAGCAGTTGGAATATTG
TGCTGCTCTGGTGTACAGGTGGAGGCAGAAACTTATTCCCTTGTTTTACAAGAGTGCATT
TTCCGCCAAGCGTATAAGAAAGGGAAAAGAGTCCATTGGCAAATGATTACTGTCGGCTTT
GTTCCAAATGAATATCTGACTGTTAAGTTGTTAATTTTGTATGCAAAAGCAGGAGATTTG
GATACATCACACAATATATTTGATAAGTTACAATTCAAAAGCTTGGTTTCGTGGAACGCT
ATGATTGCTGGGTATGTGCAGAAGGGCATGGAGGAAGTAGGCCTGAGTCTGTACCATGAT
ATGAAACAGAAATATGTACTTCCAGATCAGTATACCTTTTCATCAGTCTTTAGAGCCTGT
GCCTCTTTAGCTGTCTTGGAGCAGGGCAAGCAAGCACATGCTTTGTTGATTAAAAGCCAA
ATTAGTGGAAATATTGTAGTTAATAGTGCACTTATGGACATGTATTTCAAGTGTAGTTCT
CCATCTGATGGCTATCTCGTGTTTAGTAAGTCCTTGGAAAGGAATGTGATAACATGGACT
GCTCTGATATCAGGGTATGGACTAAATGGAAGAATAAAAGATGTTCTGGAATCATTTCAT
AGGATGATAGATGAAGGATATAGGCCAAACCATGTTACGTTTCTGGCAGTTCTTTCTGCT
TGTAGCCATGGAGGTCTGGTAGATAGAGGTAAGGAGTATTTTTCATCTATGATGAGAGAT
TATGGGCTTCAACCAAGAGGAAAGCACTATGCAGCTATTGTGGATCTTCTAGGCCGTGCT
GGAAGATTACAAGAGGCTCATGAGTTTGTCAAAAACTCACGTTGTGAGGAGCACCCAGTA
TTATGGGGCGCTTTACTTGGGGCTTGTAAGATTCATGGTGATATCGAGATGGTAAAACTT
GCTGCTAGAAATTTCTTCGACTTGGAGCCTGAGAATGCAGGCAAATACGTTGTCTTATCT
AATGCTTATGCTTCTTTTGGTTTGTGGAACAATGTTGCGGAGATAAGGAGACTGATGAAA
GACTCGGGGGTGAAAAAGGAGCCTGGTTATAGTATGATTGAGGTTCAAAGACAAGCACAT
TTCTTCTTTATGGAACATAATGCTCATGAACAGACTGTTGAAATGTATAAATTGGTCAAA
GATATGGCAGGCATCTTAAAAGATGCTGGCGATGTTCAAGATTTACTGAGTTAA

Peptide Sequence

PEP ID

Solyc11g012475.1.1
PEP Infomation

Pentatricopeptide repeat-containing protein (AHRD V3.3 *** A0A118K094_CYNCS)
Sequence

MLPLSRMKSLLSPVLSRPTIMFVCRGYGVLSTFKNLNSAQTMNPMSKVSSFRCSTVQNHS
QIRVLSSEASGSNSGSGSGEVHVIVGPMFAGKTTTLLKRIKSERSNGSFQANGVKNSLYL
DETIKGLCFSGRVAEAVGILCCSGVQVEAETYSLVLQECIFRQAYKKGKRVHWQMITVGF
VPNEYLTVKLLILYAKAGDLDTSHNIFDKLQFKSLVSWNAMIAGYVQKGMEEVGLSLYHD
MKQKYVLPDQYTFSSVFRACASLAVLEQGKQAHALLIKSQISGNIVVNSALMDMYFKCSS
PSDGYLVFSKSLERNVITWTALISGYGLNGRIKDVLESFHRMIDEGYRPNHVTFLAVLSA
CSHGGLVDRGKEYFSSMMRDYGLQPRGKHYAAIVDLLGRAGRLQEAHEFVKNSRCEEHPV
LWGALLGACKIHGDIEMVKLAARNFFDLEPENAGKYVVLSNAYASFGLWNNVAEIRRLMK
DSGVKKEPGYSMIEVQRQAHFFFMEHNAHEQTVEMYKLVKDMAGILKDAGDVQDLLS*

Transcript Sequence

Transcript ID

Solyc11g012475.1.1
Transcript Infomation

Pentatricopeptide repeat-containing protein (AHRD V3.3 *** A0A118K094_CYNCS)
Sequence

CGCACGAAAATTGATCCGAACAAAATCTTTTGTAGGTAAGTTGTATTTCCCATCCTCCTT
GGTTCCATCTTCCCTCCAAGAACCTAAAACCCTCAAAACCCTGCCCCCTTTTCTCATCTC
ATATACTTTTATCATCATTTGGACTCAATTTCCCATGAAATTATATCTACAAACAGTCTT
TATGTGATTAAATTTGAAGAATTTCAGCCCAAAAAACCCAAAAAGAATCAATTTTTATGT
TACCATTATCAAGAATGAAATCACTCCTTTCCCCAGTACTTTCAAGACCCACCATCATGT
TTGTATGCAGGGGATATGGGGTTCTTAGCACTTTCAAGAACCTTAATTCTGCTCAAACAA
TGAACCCCATGAGTAAAGTTTCTTCCTTTAGGTGTTCTACTGTGCAAAATCATAGTCAAA
TTCGGGTCTTGAGTAGTGAGGCATCGGGTTCTAATTCTGGTTCTGGTTCTGGTGAGGTTC
ATGTGATTGTGGGTCCTATGTTTGCTGGAAAAACTACTACACTTTTGAAGAGGATTAAGT
CTGAGAGAAGCAATGGCAGTTTTCAGGCCAATGGAGTAAAGAATTCCCTCTATTTGGATG
AGACGATAAAAGGTCTCTGTTTCTCAGGAAGGGTGGCTGAAGCAGTTGGAATATTGTGCT
GCTCTGGTGTACAGGTGGAGGCAGAAACTTATTCCCTTGTTTTACAAGAGTGCATTTTCC
GCCAAGCGTATAAGAAAGGGAAAAGAGTCCATTGGCAAATGATTACTGTCGGCTTTGTTC
CAAATGAATATCTGACTGTTAAGTTGTTAATTTTGTATGCAAAAGCAGGAGATTTGGATA
CATCACACAATATATTTGATAAGTTACAATTCAAAAGCTTGGTTTCGTGGAACGCTATGA
TTGCTGGGTATGTGCAGAAGGGCATGGAGGAAGTAGGCCTGAGTCTGTACCATGATATGA
AACAGAAATATGTACTTCCAGATCAGTATACCTTTTCATCAGTCTTTAGAGCCTGTGCCT
CTTTAGCTGTCTTGGAGCAGGGCAAGCAAGCACATGCTTTGTTGATTAAAAGCCAAATTA
GTGGAAATATTGTAGTTAATAGTGCACTTATGGACATGTATTTCAAGTGTAGTTCTCCAT
CTGATGGCTATCTCGTGTTTAGTAAGTCCTTGGAAAGGAATGTGATAACATGGACTGCTC
TGATATCAGGGTATGGACTAAATGGAAGAATAAAAGATGTTCTGGAATCATTTCATAGGA
TGATAGATGAAGGATATAGGCCAAACCATGTTACGTTTCTGGCAGTTCTTTCTGCTTGTA
GCCATGGAGGTCTGGTAGATAGAGGTAAGGAGTATTTTTCATCTATGATGAGAGATTATG
GGCTTCAACCAAGAGGAAAGCACTATGCAGCTATTGTGGATCTTCTAGGCCGTGCTGGAA
GATTACAAGAGGCTCATGAGTTTGTCAAAAACTCACGTTGTGAGGAGCACCCAGTATTAT
GGGGCGCTTTACTTGGGGCTTGTAAGATTCATGGTGATATCGAGATGGTAAAACTTGCTG
CTAGAAATTTCTTCGACTTGGAGCCTGAGAATGCAGGCAAATACGTTGTCTTATCTAATG
CTTATGCTTCTTTTGGTTTGTGGAACAATGTTGCGGAGATAAGGAGACTGATGAAAGACT
CGGGGGTGAAAAAGGAGCCTGGTTATAGTATGATTGAGGTTCAAAGACAAGCACATTTCT
TCTTTATGGAACATAATGCTCATGAACAGACTGTTGAAATGTATAAATTGGTCAAAGATA
TGGCAGGCATCTTAAAAGATGCTGGCGATGTTCAAGATTTACTGAGTTAA